Strain Fitness in Erwinia amylovora T8 around OLJFJH_02455

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_02450 and OLJFJH_02455 are separated by 193 nucleotidesOLJFJH_02455 and OLJFJH_02460 are separated by 1 nucleotidesOLJFJH_02460 and OLJFJH_02465 are separated by 65 nucleotides OLJFJH_02450: OLJFJH_02450 - esterase, at 437,408 to 438,166 _02450 OLJFJH_02455: OLJFJH_02455 - methyl-accepting chemotaxis protein, at 438,360 to 440,294 _02455 OLJFJH_02460: OLJFJH_02460 - biofilm peroxide resistance protein BsmA, at 440,296 to 440,664 _02460 OLJFJH_02465: OLJFJH_02465 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 440,730 to 441,467 _02465 Position (kb) 438 439 440 441Strain fitness (log2 ratio) -2 -1 0 1at 437.435 kb on + strandat 437.436 kb on - strandat 437.436 kb on - strandat 437.488 kb on + strand, within OLJFJH_02450at 437.520 kb on + strand, within OLJFJH_02450at 437.520 kb on + strand, within OLJFJH_02450at 437.520 kb on + strand, within OLJFJH_02450at 437.520 kb on + strand, within OLJFJH_02450at 437.521 kb on - strand, within OLJFJH_02450at 437.521 kb on - strand, within OLJFJH_02450at 437.521 kb on - strand, within OLJFJH_02450at 437.905 kb on + strand, within OLJFJH_02450at 437.977 kb on + strand, within OLJFJH_02450at 438.034 kb on - strand, within OLJFJH_02450at 438.039 kb on + strand, within OLJFJH_02450at 438.039 kb on + strand, within OLJFJH_02450at 438.040 kb on - strand, within OLJFJH_02450at 438.069 kb on + strand, within OLJFJH_02450at 438.070 kb on - strand, within OLJFJH_02450at 438.122 kb on + strandat 438.122 kb on + strandat 438.122 kb on + strandat 438.123 kb on - strandat 438.169 kb on + strandat 438.182 kb on + strandat 438.183 kb on - strandat 438.186 kb on + strandat 438.186 kb on + strandat 438.187 kb on - strandat 438.190 kb on + strandat 438.346 kb on + strandat 438.347 kb on - strandat 438.347 kb on - strandat 438.347 kb on - strandat 438.349 kb on - strandat 438.349 kb on - strandat 438.448 kb on + strandat 438.449 kb on - strandat 438.465 kb on + strandat 438.465 kb on + strandat 438.506 kb on + strandat 438.546 kb on - strandat 438.546 kb on - strandat 438.552 kb on - strandat 438.786 kb on - strand, within OLJFJH_02455at 438.803 kb on + strand, within OLJFJH_02455at 438.918 kb on + strand, within OLJFJH_02455at 438.918 kb on + strand, within OLJFJH_02455at 438.918 kb on + strand, within OLJFJH_02455at 438.919 kb on - strand, within OLJFJH_02455at 438.919 kb on - strand, within OLJFJH_02455at 438.919 kb on - strand, within OLJFJH_02455at 438.919 kb on - strand, within OLJFJH_02455at 438.919 kb on - strand, within OLJFJH_02455at 438.919 kb on - strand, within OLJFJH_02455at 438.921 kb on - strand, within OLJFJH_02455at 438.947 kb on + strand, within OLJFJH_02455at 439.002 kb on + strand, within OLJFJH_02455at 439.003 kb on - strand, within OLJFJH_02455at 439.060 kb on - strand, within OLJFJH_02455at 439.060 kb on - strand, within OLJFJH_02455at 439.068 kb on - strand, within OLJFJH_02455at 439.070 kb on + strand, within OLJFJH_02455at 439.098 kb on + strand, within OLJFJH_02455at 439.099 kb on - strand, within OLJFJH_02455at 439.304 kb on + strand, within OLJFJH_02455at 439.611 kb on - strand, within OLJFJH_02455at 440.067 kb on - strand, within OLJFJH_02455at 440.109 kb on - strandat 440.303 kb on - strandat 440.304 kb on + strandat 440.308 kb on - strandat 440.314 kb on + strandat 440.314 kb on + strandat 440.314 kb on + strandat 440.314 kb on + strandat 440.314 kb on + strandat 440.314 kb on + strandat 440.314 kb on + strandat 440.343 kb on + strand, within OLJFJH_02460at 440.363 kb on + strand, within OLJFJH_02460at 440.395 kb on + strand, within OLJFJH_02460at 440.563 kb on + strand, within OLJFJH_02460at 440.564 kb on - strand, within OLJFJH_02460at 440.566 kb on + strand, within OLJFJH_02460at 440.627 kb on + strand, within OLJFJH_02460at 440.627 kb on + strand, within OLJFJH_02460at 440.627 kb on + strand, within OLJFJH_02460at 440.627 kb on + strand, within OLJFJH_02460at 440.627 kb on + strand, within OLJFJH_02460at 440.628 kb on - strandat 440.628 kb on - strandat 440.628 kb on - strandat 440.629 kb on + strandat 440.630 kb on - strandat 440.630 kb on - strandat 440.630 kb on - strandat 440.675 kb on + strandat 440.675 kb on + strandat 440.675 kb on + strandat 440.679 kb on + strandat 440.727 kb on + strandat 440.727 kb on + strandat 440.727 kb on + strandat 440.727 kb on + strandat 440.728 kb on - strandat 440.728 kb on - strandat 440.731 kb on + strandat 440.990 kb on + strand, within OLJFJH_02465at 440.991 kb on - strand, within OLJFJH_02465at 440.991 kb on - strand, within OLJFJH_02465at 441.132 kb on - strand, within OLJFJH_02465at 441.230 kb on - strand, within OLJFJH_02465at 441.258 kb on - strand, within OLJFJH_02465

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-1
remove
437,435 + +0.8
437,436 - -0.0
437,436 - -0.0
437,488 + OLJFJH_02450 0.11 -0.1
437,520 + OLJFJH_02450 0.15 -1.8
437,520 + OLJFJH_02450 0.15 -1.0
437,520 + OLJFJH_02450 0.15 -0.2
437,520 + OLJFJH_02450 0.15 -0.1
437,521 - OLJFJH_02450 0.15 -0.3
437,521 - OLJFJH_02450 0.15 +0.0
437,521 - OLJFJH_02450 0.15 +0.2
437,905 + OLJFJH_02450 0.65 +0.1
437,977 + OLJFJH_02450 0.75 -0.2
438,034 - OLJFJH_02450 0.82 -0.2
438,039 + OLJFJH_02450 0.83 -1.2
438,039 + OLJFJH_02450 0.83 -0.5
438,040 - OLJFJH_02450 0.83 -0.5
438,069 + OLJFJH_02450 0.87 +0.2
438,070 - OLJFJH_02450 0.87 -0.0
438,122 + +0.0
438,122 + -0.6
438,122 + -0.4
438,123 - +0.4
438,169 + -0.6
438,182 + -1.1
438,183 - -0.5
438,186 + +0.9
438,186 + -0.0
438,187 - -0.1
438,190 + -0.3
438,346 + -0.3
438,347 - +0.5
438,347 - +0.1
438,347 - +1.4
438,349 - +0.5
438,349 - -0.7
438,448 + -0.8
438,449 - -0.1
438,465 + -1.3
438,465 + -0.0
438,506 + +0.2
438,546 - -0.7
438,546 - -0.3
438,552 - -0.9
438,786 - OLJFJH_02455 0.22 +0.5
438,803 + OLJFJH_02455 0.23 -1.5
438,918 + OLJFJH_02455 0.29 -0.4
438,918 + OLJFJH_02455 0.29 +1.7
438,918 + OLJFJH_02455 0.29 +0.2
438,919 - OLJFJH_02455 0.29 +0.0
438,919 - OLJFJH_02455 0.29 -1.3
438,919 - OLJFJH_02455 0.29 +0.5
438,919 - OLJFJH_02455 0.29 +0.1
438,919 - OLJFJH_02455 0.29 +0.2
438,919 - OLJFJH_02455 0.29 +0.8
438,921 - OLJFJH_02455 0.29 -1.0
438,947 + OLJFJH_02455 0.30 +0.3
439,002 + OLJFJH_02455 0.33 -0.3
439,003 - OLJFJH_02455 0.33 -0.7
439,060 - OLJFJH_02455 0.36 +0.1
439,060 - OLJFJH_02455 0.36 +0.0
439,068 - OLJFJH_02455 0.37 +1.6
439,070 + OLJFJH_02455 0.37 -0.5
439,098 + OLJFJH_02455 0.38 +0.6
439,099 - OLJFJH_02455 0.38 -0.6
439,304 + OLJFJH_02455 0.49 +0.8
439,611 - OLJFJH_02455 0.65 -0.3
440,067 - OLJFJH_02455 0.88 -0.6
440,109 - +0.2
440,303 - -1.0
440,304 + -0.4
440,308 - -0.5
440,314 + -0.0
440,314 + +0.9
440,314 + -0.1
440,314 + -0.1
440,314 + +0.2
440,314 + +0.2
440,314 + +0.2
440,343 + OLJFJH_02460 0.13 +1.1
440,363 + OLJFJH_02460 0.18 +0.8
440,395 + OLJFJH_02460 0.27 -0.0
440,563 + OLJFJH_02460 0.72 +0.0
440,564 - OLJFJH_02460 0.73 -1.4
440,566 + OLJFJH_02460 0.73 -0.0
440,627 + OLJFJH_02460 0.90 +0.1
440,627 + OLJFJH_02460 0.90 +0.4
440,627 + OLJFJH_02460 0.90 +0.7
440,627 + OLJFJH_02460 0.90 -2.1
440,627 + OLJFJH_02460 0.90 +0.0
440,628 - +0.3
440,628 - -0.5
440,628 - -0.5
440,629 + +0.4
440,630 - -0.3
440,630 - -0.4
440,630 - -1.6
440,675 + -0.4
440,675 + +1.1
440,675 + -1.0
440,679 + +0.9
440,727 + -1.5
440,727 + -0.2
440,727 + -0.4
440,727 + +0.1
440,728 - +0.0
440,728 - +0.0
440,731 + +0.7
440,990 + OLJFJH_02465 0.35 -0.7
440,991 - OLJFJH_02465 0.35 -0.8
440,991 - OLJFJH_02465 0.35 -1.9
441,132 - OLJFJH_02465 0.54 -0.6
441,230 - OLJFJH_02465 0.68 -0.8
441,258 - OLJFJH_02465 0.72 -0.6

Or see this region's nucleotide sequence