Strain Fitness in Pseudomonas sp. RS175 around PFR28_04466

Experiment: D-Trehalose (C) 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04465 and PFR28_04466 are separated by 18 nucleotidesPFR28_04466 and PFR28_04467 are separated by 12 nucleotides PFR28_04465: PFR28_04465 - Actin cross-linking toxin VgrG1, at 5,085,106 to 5,087,037 _04465 PFR28_04466: PFR28_04466 - hypothetical protein, at 5,087,056 to 5,087,490 _04466 PFR28_04467: PFR28_04467 - hypothetical protein, at 5,087,503 to 5,091,945 _04467 Position (kb) 5087 5088Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5086.057 kb on + strand, within PFR28_04465at 5086.078 kb on + strand, within PFR28_04465at 5086.079 kb on - strand, within PFR28_04465at 5086.081 kb on + strand, within PFR28_04465at 5086.081 kb on + strand, within PFR28_04465at 5086.081 kb on + strand, within PFR28_04465at 5086.081 kb on + strand, within PFR28_04465at 5086.081 kb on + strand, within PFR28_04465at 5086.082 kb on - strand, within PFR28_04465at 5086.082 kb on - strand, within PFR28_04465at 5086.082 kb on - strand, within PFR28_04465at 5086.082 kb on - strand, within PFR28_04465at 5086.082 kb on - strand, within PFR28_04465at 5086.082 kb on - strand, within PFR28_04465at 5086.291 kb on + strand, within PFR28_04465at 5086.291 kb on + strand, within PFR28_04465at 5086.462 kb on + strand, within PFR28_04465at 5086.462 kb on + strand, within PFR28_04465at 5086.603 kb on + strand, within PFR28_04465at 5086.603 kb on + strand, within PFR28_04465at 5086.603 kb on + strand, within PFR28_04465at 5086.603 kb on + strand, within PFR28_04465at 5086.603 kb on + strand, within PFR28_04465at 5086.603 kb on + strand, within PFR28_04465at 5086.603 kb on + strand, within PFR28_04465at 5086.603 kb on + strand, within PFR28_04465at 5086.603 kb on + strand, within PFR28_04465at 5086.603 kb on + strand, within PFR28_04465at 5086.604 kb on - strand, within PFR28_04465at 5086.604 kb on - strand, within PFR28_04465at 5086.604 kb on - strand, within PFR28_04465at 5086.604 kb on - strand, within PFR28_04465at 5086.604 kb on - strand, within PFR28_04465at 5086.604 kb on - strand, within PFR28_04465at 5086.604 kb on - strand, within PFR28_04465at 5086.604 kb on - strand, within PFR28_04465at 5086.604 kb on - strand, within PFR28_04465at 5086.792 kb on + strand, within PFR28_04465at 5086.792 kb on + strand, within PFR28_04465at 5086.792 kb on + strand, within PFR28_04465at 5086.792 kb on + strand, within PFR28_04465at 5086.792 kb on + strand, within PFR28_04465at 5086.792 kb on + strand, within PFR28_04465at 5086.792 kb on + strand, within PFR28_04465at 5086.793 kb on - strand, within PFR28_04465at 5086.793 kb on - strand, within PFR28_04465at 5086.793 kb on - strand, within PFR28_04465at 5086.793 kb on - strand, within PFR28_04465at 5086.793 kb on - strand, within PFR28_04465at 5086.793 kb on - strand, within PFR28_04465at 5086.793 kb on - strand, within PFR28_04465at 5086.793 kb on - strand, within PFR28_04465at 5086.826 kb on + strand, within PFR28_04465at 5086.826 kb on + strand, within PFR28_04465at 5086.897 kb on + strandat 5086.897 kb on + strandat 5086.898 kb on - strandat 5087.035 kb on + strandat 5087.035 kb on + strandat 5087.035 kb on + strandat 5087.036 kb on - strandat 5087.036 kb on - strandat 5087.124 kb on + strand, within PFR28_04466at 5087.124 kb on + strand, within PFR28_04466at 5087.124 kb on + strand, within PFR28_04466at 5087.125 kb on - strand, within PFR28_04466at 5087.125 kb on - strand, within PFR28_04466at 5087.404 kb on + strand, within PFR28_04466at 5087.404 kb on + strand, within PFR28_04466at 5087.404 kb on + strand, within PFR28_04466at 5087.405 kb on - strand, within PFR28_04466at 5087.405 kb on - strand, within PFR28_04466at 5087.405 kb on - strand, within PFR28_04466at 5087.759 kb on + strandat 5088.342 kb on + strand, within PFR28_04467at 5088.343 kb on - strand, within PFR28_04467at 5088.484 kb on + strand, within PFR28_04467at 5088.484 kb on + strand, within PFR28_04467at 5088.484 kb on + strand, within PFR28_04467at 5088.484 kb on + strand, within PFR28_04467at 5088.484 kb on + strand, within PFR28_04467at 5088.484 kb on + strand, within PFR28_04467at 5088.484 kb on + strand, within PFR28_04467at 5088.485 kb on - strand, within PFR28_04467at 5088.485 kb on - strand, within PFR28_04467at 5088.485 kb on - strand, within PFR28_04467at 5088.485 kb on - strand, within PFR28_04467at 5088.486 kb on + strand, within PFR28_04467at 5088.486 kb on + strand, within PFR28_04467

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C) 5 mM
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5,086,057 + PFR28_04465 0.49 -0.8
5,086,078 + PFR28_04465 0.50 -0.3
5,086,079 - PFR28_04465 0.50 +0.8
5,086,081 + PFR28_04465 0.50 -1.1
5,086,081 + PFR28_04465 0.50 -1.7
5,086,081 + PFR28_04465 0.50 +0.2
5,086,081 + PFR28_04465 0.50 +0.3
5,086,081 + PFR28_04465 0.50 +0.4
5,086,082 - PFR28_04465 0.51 +0.5
5,086,082 - PFR28_04465 0.51 -1.4
5,086,082 - PFR28_04465 0.51 -1.0
5,086,082 - PFR28_04465 0.51 -1.0
5,086,082 - PFR28_04465 0.51 +0.7
5,086,082 - PFR28_04465 0.51 +0.5
5,086,291 + PFR28_04465 0.61 -0.0
5,086,291 + PFR28_04465 0.61 -0.2
5,086,462 + PFR28_04465 0.70 +0.6
5,086,462 + PFR28_04465 0.70 -1.1
5,086,603 + PFR28_04465 0.77 -0.1
5,086,603 + PFR28_04465 0.77 -0.7
5,086,603 + PFR28_04465 0.77 -0.4
5,086,603 + PFR28_04465 0.77 -1.1
5,086,603 + PFR28_04465 0.77 -2.9
5,086,603 + PFR28_04465 0.77 +0.3
5,086,603 + PFR28_04465 0.77 -0.5
5,086,603 + PFR28_04465 0.77 -2.6
5,086,603 + PFR28_04465 0.77 -0.9
5,086,603 + PFR28_04465 0.77 +1.8
5,086,604 - PFR28_04465 0.78 +0.1
5,086,604 - PFR28_04465 0.78 -0.1
5,086,604 - PFR28_04465 0.78 +1.3
5,086,604 - PFR28_04465 0.78 +1.4
5,086,604 - PFR28_04465 0.78 -1.1
5,086,604 - PFR28_04465 0.78 +0.9
5,086,604 - PFR28_04465 0.78 -0.1
5,086,604 - PFR28_04465 0.78 +0.7
5,086,604 - PFR28_04465 0.78 -0.6
5,086,792 + PFR28_04465 0.87 -1.9
5,086,792 + PFR28_04465 0.87 +1.9
5,086,792 + PFR28_04465 0.87 +0.5
5,086,792 + PFR28_04465 0.87 -0.7
5,086,792 + PFR28_04465 0.87 +0.1
5,086,792 + PFR28_04465 0.87 -0.1
5,086,792 + PFR28_04465 0.87 -0.8
5,086,793 - PFR28_04465 0.87 +1.4
5,086,793 - PFR28_04465 0.87 +0.7
5,086,793 - PFR28_04465 0.87 +0.3
5,086,793 - PFR28_04465 0.87 -0.4
5,086,793 - PFR28_04465 0.87 -0.6
5,086,793 - PFR28_04465 0.87 -0.1
5,086,793 - PFR28_04465 0.87 +1.1
5,086,793 - PFR28_04465 0.87 +0.4
5,086,826 + PFR28_04465 0.89 -0.7
5,086,826 + PFR28_04465 0.89 +0.3
5,086,897 + -1.7
5,086,897 + +2.7
5,086,898 - -0.2
5,087,035 + +1.5
5,087,035 + +0.7
5,087,035 + -0.2
5,087,036 - +0.7
5,087,036 - -3.3
5,087,124 + PFR28_04466 0.16 -0.8
5,087,124 + PFR28_04466 0.16 -1.4
5,087,124 + PFR28_04466 0.16 -2.2
5,087,125 - PFR28_04466 0.16 +0.1
5,087,125 - PFR28_04466 0.16 -0.6
5,087,404 + PFR28_04466 0.80 +0.3
5,087,404 + PFR28_04466 0.80 +0.3
5,087,404 + PFR28_04466 0.80 -1.7
5,087,405 - PFR28_04466 0.80 +0.4
5,087,405 - PFR28_04466 0.80 -0.4
5,087,405 - PFR28_04466 0.80 -0.6
5,087,759 + -0.8
5,088,342 + PFR28_04467 0.19 -1.7
5,088,343 - PFR28_04467 0.19 -1.2
5,088,484 + PFR28_04467 0.22 -0.2
5,088,484 + PFR28_04467 0.22 -0.3
5,088,484 + PFR28_04467 0.22 -3.3
5,088,484 + PFR28_04467 0.22 +1.1
5,088,484 + PFR28_04467 0.22 +1.8
5,088,484 + PFR28_04467 0.22 -0.3
5,088,484 + PFR28_04467 0.22 -1.6
5,088,485 - PFR28_04467 0.22 +1.2
5,088,485 - PFR28_04467 0.22 +0.6
5,088,485 - PFR28_04467 0.22 -0.4
5,088,485 - PFR28_04467 0.22 +0.5
5,088,486 + PFR28_04467 0.22 +0.4
5,088,486 + PFR28_04467 0.22 +0.4

Or see this region's nucleotide sequence