Strain Fitness in Pseudomonas sp. RS175 around PFR28_04464

Experiment: D-Trehalose (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose (C) 5 mM
5,081,269	-				+0.6
5,081,509	-		PFR28_04463	0.30	-0.8
5,081,509	-		PFR28_04463	0.30	-0.0
5,081,509	-		PFR28_04463	0.30	+2.7
5,081,509	-		PFR28_04463	0.30	+1.3
5,081,652	+		PFR28_04463	0.43	-1.5
5,081,652	+		PFR28_04463	0.43	-1.6
5,081,742	+		PFR28_04463	0.52	-0.7
5,081,742	+		PFR28_04463	0.52	+0.5
5,081,742	+		PFR28_04463	0.52	-0.1
5,081,743	-		PFR28_04463	0.52	-1.3
5,081,743	-		PFR28_04463	0.52	-0.2
5,081,743	-		PFR28_04463	0.52	+0.9
5,081,743	-		PFR28_04463	0.52	+0.2
5,081,743	-		PFR28_04463	0.52	-1.4
5,081,805	+		PFR28_04463	0.58	-0.7
5,081,835	+		PFR28_04463	0.61	-1.1
5,081,835	+		PFR28_04463	0.61	+0.3
5,081,835	+		PFR28_04463	0.61	-1.0
5,081,835	+		PFR28_04463	0.61	+2.1
5,081,836	-		PFR28_04463	0.61	-2.6
5,081,836	-		PFR28_04463	0.61	+0.3
5,081,836	-		PFR28_04463	0.61	+0.2
5,081,836	-		PFR28_04463	0.61	-1.6
5,081,982	+		PFR28_04463	0.75	-0.6
5,081,982	+		PFR28_04463	0.75	-0.2
5,081,982	+		PFR28_04463	0.75	-0.1
5,081,982	+		PFR28_04463	0.75	+0.5
5,081,982	+		PFR28_04463	0.75	-0.1
5,081,982	+		PFR28_04463	0.75	-0.4
5,081,982	+		PFR28_04463	0.75	-0.2
5,081,982	+		PFR28_04463	0.75	-0.5
5,081,983	-		PFR28_04463	0.75	-1.1
5,081,983	-		PFR28_04463	0.75	-0.1
5,081,983	-		PFR28_04463	0.75	+0.3
5,081,983	-		PFR28_04463	0.75	-0.4
5,082,140	+		PFR28_04463	0.90	+0.6
5,082,140	+		PFR28_04463	0.90	-0.7
5,082,141	-		PFR28_04463	0.90	-1.6
5,082,141	-		PFR28_04463	0.90	-0.5
5,082,178	+				+0.0
5,082,178	+				+0.2
5,082,178	+				+0.6
5,082,178	+				-0.5
5,082,178	+				-0.1
5,082,178	+				-0.2
5,082,178	+				-0.6
5,082,179	-				-0.3
5,082,179	-				-0.1
5,082,179	-				+1.4
5,082,179	-				+0.7
5,082,179	-				+0.1
5,082,179	-				+0.9
5,082,181	+				+1.7
5,082,182	-				-1.0
5,082,182	-				-0.9
5,082,292	+				-0.1
5,082,292	+				+0.4
5,082,293	-				+0.2
5,082,293	-				+0.4
5,082,293	-				+0.0
5,082,343	+				-2.9
5,082,343	+				+0.6
5,082,344	-				-2.4
5,082,344	-				+1.0
5,082,544	+		PFR28_04464	0.11	-0.8
5,082,545	-		PFR28_04464	0.11	-0.5
5,082,545	-		PFR28_04464	0.11	-1.1
5,082,545	-		PFR28_04464	0.11	-0.3
5,082,586	+		PFR28_04464	0.13	+0.1
5,082,697	+		PFR28_04464	0.17	-0.7
5,082,697	+		PFR28_04464	0.17	+0.6
5,082,698	-		PFR28_04464	0.17	-3.2
5,082,698	-		PFR28_04464	0.17	-0.8
5,082,698	-		PFR28_04464	0.17	-0.2
5,082,698	-		PFR28_04464	0.17	-0.7
5,082,698	-		PFR28_04464	0.17	-2.1
5,082,698	-		PFR28_04464	0.17	+1.3
5,082,801	+		PFR28_04464	0.21	-2.3
5,082,801	+		PFR28_04464	0.21	-0.2
5,083,016	+		PFR28_04464	0.29	+0.1
5,083,017	-		PFR28_04464	0.29	-1.2
5,083,017	-		PFR28_04464	0.29	-0.6
5,083,017	-		PFR28_04464	0.29	+0.6
5,083,288	+		PFR28_04464	0.39	+0.6
5,083,289	-		PFR28_04464	0.39	-0.7
5,083,289	-		PFR28_04464	0.39	-0.2
5,083,289	-		PFR28_04464	0.39	+0.8
5,083,471	+		PFR28_04464	0.46	+0.5
5,084,114	+		PFR28_04464	0.70	-0.4
5,084,182	+		PFR28_04464	0.72	-0.6
5,084,182	+		PFR28_04464	0.72	-1.5
5,084,182	+		PFR28_04464	0.72	+1.1
5,084,182	+		PFR28_04464	0.72	-1.3
5,084,182	+		PFR28_04464	0.72	+0.8
5,084,182	+		PFR28_04464	0.72	+1.5
5,084,182	+		PFR28_04464	0.72	-0.7
5,084,182	+		PFR28_04464	0.72	-0.4
5,084,182	+		PFR28_04464	0.72	-0.1
5,084,183	-		PFR28_04464	0.72	-0.9
5,084,183	-		PFR28_04464	0.72	+0.2
5,084,183	-		PFR28_04464	0.72	+0.9
5,084,183	-		PFR28_04464	0.72	+2.0
5,084,272	+		PFR28_04464	0.76	-1.7
5,084,273	-		PFR28_04464	0.76	-0.3
5,084,297	+		PFR28_04464	0.77	-0.2
5,084,297	+		PFR28_04464	0.77	-2.5
5,084,298	-		PFR28_04464	0.77	+0.3
5,084,298	-		PFR28_04464	0.77	-0.9
5,084,298	-		PFR28_04464	0.77	+0.1
5,084,298	-		PFR28_04464	0.77	-0.4
5,084,298	-		PFR28_04464	0.77	+0.2
5,084,326	+		PFR28_04464	0.78	-1.0
5,084,327	-		PFR28_04464	0.78	-1.1
5,084,611	+		PFR28_04464	0.88	-0.4
5,084,611	+		PFR28_04464	0.88	+0.1
5,084,611	+		PFR28_04464	0.88	-0.2
5,084,614	+		PFR28_04464	0.89	+0.5
5,084,615	-		PFR28_04464	0.89	-1.5
5,084,695	-				-1.8
5,084,711	-				+1.2
5,084,929	+				+0.6
5,084,929	+				+0.4
5,084,929	+				-0.1
5,084,929	+				-0.8
5,084,930	-				-0.8
5,084,930	-				-0.0
5,084,930	-				-0.6
5,084,930	-				+0.5
5,084,981	+				+0.3
5,084,989	+				-0.5
5,084,990	-				-0.1
5,085,087	+				-0.8
5,085,088	-				-0.9
5,085,088	-				+0.0
5,085,088	-				+0.1
5,085,110	+				-0.9
5,085,111	-				+0.0
5,085,217	+				+0.6
5,085,217	+				-0.3
5,085,217	+				+0.5
5,085,217	+				+1.1
5,085,217	+				+1.3
5,085,217	+				+0.9
5,085,217	+				+0.8
5,085,217	+				-0.5
5,085,218	-				-0.0
5,085,218	-				-0.4
5,085,218	-				-0.7
5,085,218	-				+1.5
5,085,218	-				-0.1
5,085,218	-				+0.1
5,085,218	-				-3.3
5,085,379	+		PFR28_04465	0.14	+0.4
5,085,379	+		PFR28_04465	0.14	+0.9
5,085,380	-		PFR28_04465	0.14	+0.7
5,085,435	+		PFR28_04465	0.17	+0.4
5,085,435	+		PFR28_04465	0.17	-0.4
5,085,435	+		PFR28_04465	0.17	+0.1
5,085,554	-		PFR28_04465	0.23	-0.7
5,085,607	+		PFR28_04465	0.26	+0.4
5,085,607	+		PFR28_04465	0.26	-0.9
5,085,607	+		PFR28_04465	0.26	+0.2
5,085,607	+		PFR28_04465	0.26	-1.1
5,085,607	+		PFR28_04465	0.26	-0.3
5,085,607	+		PFR28_04465	0.26	-1.0
5,085,607	+		PFR28_04465	0.26	+1.3
5,085,607	+		PFR28_04465	0.26	+0.5
5,085,607	+		PFR28_04465	0.26	-0.6
5,085,607	+		PFR28_04465	0.26	+2.2
5,085,608	-		PFR28_04465	0.26	+0.1
5,085,608	-		PFR28_04465	0.26	+0.3
5,085,608	-		PFR28_04465	0.26	+0.1
5,085,608	-		PFR28_04465	0.26	-0.6
5,085,608	-		PFR28_04465	0.26	+0.7
5,085,608	-		PFR28_04465	0.26	+1.1
5,085,610	+		PFR28_04465	0.26	-2.1
5,085,610	+		PFR28_04465	0.26	+0.5
5,085,610	+		PFR28_04465	0.26	-0.2
5,085,610	+		PFR28_04465	0.26	-0.5
5,085,610	+		PFR28_04465	0.26	+0.2
5,085,610	+		PFR28_04465	0.26	-0.1
5,085,611	-		PFR28_04465	0.26	+0.1
5,085,611	-		PFR28_04465	0.26	+0.1
5,085,611	-		PFR28_04465	0.26	-0.5
5,085,704	-		PFR28_04465	0.31	+0.9
5,085,704	-		PFR28_04465	0.31	-0.4
5,085,704	-		PFR28_04465	0.31	-1.1
5,085,707	-		PFR28_04465	0.31	-1.4
5,085,881	-		PFR28_04465	0.40	-0.8
5,085,887	-		PFR28_04465	0.40	-1.4
5,085,898	+		PFR28_04465	0.41	+0.3
5,085,898	+		PFR28_04465	0.41	-1.3
5,085,898	+		PFR28_04465	0.41	-0.3
5,085,898	+		PFR28_04465	0.41	-0.3
5,085,899	-		PFR28_04465	0.41	+0.7
5,085,899	-		PFR28_04465	0.41	+0.4
5,085,899	-		PFR28_04465	0.41	-0.3
5,085,899	-		PFR28_04465	0.41	-1.8
5,085,899	-		PFR28_04465	0.41	-0.5
5,085,899	-		PFR28_04465	0.41	-1.3
5,085,899	-		PFR28_04465	0.41	-0.8
5,085,899	-		PFR28_04465	0.41	-3.0
5,085,899	-		PFR28_04465	0.41	-0.8