Strain Fitness in Pseudomonas sp. RS175 around PFR28_02503

Experiment: D-Trehalose (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose (C) 5 mM
2,974,906	+		PFR28_02500	0.75	+0.1
2,974,907	-		PFR28_02500	0.76	-0.9
2,974,907	-		PFR28_02500	0.76	+0.0
2,974,995	+				+0.2
2,974,996	-				-0.2
2,975,064	-				+1.7
2,975,064	-				-0.4
2,975,086	+				+0.5
2,975,087	-				-0.3
2,975,089	-				+1.1
2,975,109	-				+0.6
2,975,140	+				+1.3
2,975,255	-				+0.7
2,975,734	+				-0.4
2,975,748	+				-0.1
2,975,796	-				+1.8
2,975,801	+				-1.6
2,975,827	-				-0.5
2,975,842	-				-0.1
2,975,902	+				+0.7
2,975,902	+				-0.8
2,975,902	+				+1.2
2,975,903	-				+0.4
2,975,903	-				+0.4
2,975,903	-				-1.2
2,976,116	-		PFR28_02503	0.29	-0.2
2,976,141	-		PFR28_02503	0.32	-0.4
2,976,141	-		PFR28_02503	0.32	-2.5
2,976,141	-		PFR28_02503	0.32	+0.9
2,976,141	-		PFR28_02503	0.32	-1.5
2,976,157	+		PFR28_02503	0.34	-0.2
2,976,157	+		PFR28_02503	0.34	-1.1
2,976,157	+		PFR28_02503	0.34	-1.1
2,976,157	+		PFR28_02503	0.34	-1.0
2,976,158	-		PFR28_02503	0.34	+1.0
2,976,158	-		PFR28_02503	0.34	-2.1
2,976,161	+		PFR28_02503	0.35	-1.2
2,976,161	+		PFR28_02503	0.35	-0.6
2,976,161	+		PFR28_02503	0.35	-0.7
2,976,161	+		PFR28_02503	0.35	-1.3
2,976,162	-		PFR28_02503	0.35	-0.8
2,976,162	-		PFR28_02503	0.35	-3.0
2,976,207	-		PFR28_02503	0.41	+0.4
2,976,252	-		PFR28_02503	0.47	-0.6
2,976,252	-		PFR28_02503	0.47	+0.0
2,976,310	+		PFR28_02503	0.55	+0.6
2,976,310	+		PFR28_02503	0.55	+0.2
2,976,310	+		PFR28_02503	0.55	+0.0
2,976,310	+		PFR28_02503	0.55	+0.6
2,976,310	+		PFR28_02503	0.55	-0.2
2,976,310	+		PFR28_02503	0.55	-0.1
2,976,310	+		PFR28_02503	0.55	-0.4
2,976,310	+		PFR28_02503	0.55	-0.1
2,976,310	+		PFR28_02503	0.55	+0.1
2,976,310	+		PFR28_02503	0.55	-1.6
2,976,310	+		PFR28_02503	0.55	-0.6
2,976,310	+		PFR28_02503	0.55	-1.2
2,976,310	+		PFR28_02503	0.55	-0.5
2,976,310	+		PFR28_02503	0.55	+1.5
2,976,310	+		PFR28_02503	0.55	+1.1
2,976,310	+		PFR28_02503	0.55	+0.9
2,976,310	+		PFR28_02503	0.55	-0.8
2,976,310	+		PFR28_02503	0.55	+0.5
2,976,310	+		PFR28_02503	0.55	-1.0
2,976,310	+		PFR28_02503	0.55	-0.0
2,976,311	-		PFR28_02503	0.55	+0.5
2,976,311	-		PFR28_02503	0.55	-0.5
2,976,311	-		PFR28_02503	0.55	-2.2
2,976,311	-		PFR28_02503	0.55	+0.5
2,976,311	-		PFR28_02503	0.55	+0.1
2,976,311	-		PFR28_02503	0.55	-0.4
2,976,311	-		PFR28_02503	0.55	-0.6
2,976,311	-		PFR28_02503	0.55	-0.5
2,976,311	-		PFR28_02503	0.55	+0.1
2,976,311	-		PFR28_02503	0.55	-2.6
2,976,341	+		PFR28_02503	0.59	-0.4
2,976,342	-		PFR28_02503	0.59	+0.4
2,976,342	-		PFR28_02503	0.59	-0.3
2,976,395	-		PFR28_02503	0.66	+1.8
2,976,395	-		PFR28_02503	0.66	-1.0
2,976,432	-		PFR28_02503	0.71	+0.6
2,976,432	-		PFR28_02503	0.71	+0.4
2,976,433	+		PFR28_02503	0.71	-0.2
2,976,433	+		PFR28_02503	0.71	-0.0
2,976,433	+		PFR28_02503	0.71	+0.8
2,976,433	+		PFR28_02503	0.71	-1.2
2,976,434	-		PFR28_02503	0.71	-2.6
2,976,434	-		PFR28_02503	0.71	-1.2
2,976,454	+		PFR28_02503	0.74	+0.2
2,976,454	+		PFR28_02503	0.74	-2.7
2,976,454	+		PFR28_02503	0.74	-1.2
2,976,455	-		PFR28_02503	0.74	+1.5
2,976,455	-		PFR28_02503	0.74	-1.1
2,976,455	-		PFR28_02503	0.74	+0.7
2,976,754	+				-0.3
2,976,755	-				-0.3
2,976,771	-				-0.6
2,976,823	+				-1.0
2,976,858	+				-1.8
2,976,882	+				+0.5
2,976,999	-		PFR28_02504	0.14	-1.2
2,977,347	+		PFR28_02504	0.64	-1.2
2,977,347	+		PFR28_02504	0.64	+0.8
2,977,348	-		PFR28_02504	0.64	+0.4
2,977,348	-		PFR28_02504	0.64	+0.4
2,977,348	-		PFR28_02504	0.64	-2.2
2,977,457	+		PFR28_02504	0.79	+0.2
2,977,457	+		PFR28_02504	0.79	-2.3
2,977,457	+		PFR28_02504	0.79	-2.0
2,977,458	-		PFR28_02504	0.79	+0.0
2,977,458	-		PFR28_02504	0.79	-2.8
2,977,458	-		PFR28_02504	0.79	-0.3
2,977,598	+				-0.4
2,977,598	+				+0.1
2,977,598	+				+0.6
2,977,599	-				-0.5
2,977,599	-				-2.3