Strain Fitness in Pseudomonas sp. RS175 around PFR28_02340

Experiment: D-Trehalose (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose (C) 5 mM
2,793,263	+		PFR28_02338	0.79	+0.3
2,793,263	+		PFR28_02338	0.79	-1.1
2,793,263	+		PFR28_02338	0.79	+1.6
2,793,264	-		PFR28_02338	0.79	-0.3
2,793,314	+		PFR28_02338	0.85	-1.4
2,793,315	-		PFR28_02338	0.85	+1.9
2,793,315	-		PFR28_02338	0.85	-1.4
2,793,497	-				-0.7
2,793,601	+		PFR28_02339	0.23	+0.6
2,793,601	+		PFR28_02339	0.23	+0.5
2,793,727	+		PFR28_02339	0.46	-0.5
2,793,728	-		PFR28_02339	0.46	+2.2
2,793,728	-		PFR28_02339	0.46	+1.4
2,793,728	-		PFR28_02339	0.46	+0.4
2,793,736	+		PFR28_02339	0.48	-0.4
2,793,737	-		PFR28_02339	0.48	-1.3
2,793,740	+		PFR28_02339	0.49	+0.6
2,793,741	-		PFR28_02339	0.49	+0.4
2,793,741	-		PFR28_02339	0.49	-1.3
2,793,741	-		PFR28_02339	0.49	-1.0
2,793,741	-		PFR28_02339	0.49	+0.7
2,793,845	-		PFR28_02339	0.68	-0.7
2,793,880	+		PFR28_02339	0.75	-1.4
2,793,881	-		PFR28_02339	0.75	+0.9
2,793,881	-		PFR28_02339	0.75	-1.1
2,793,881	-		PFR28_02339	0.75	-0.4
2,793,881	-		PFR28_02339	0.75	-0.3
2,793,997	+				-1.0
2,793,997	+				-2.1
2,794,068	-				-2.1
2,794,127	+				-1.8
2,794,127	+				-0.8
2,794,127	+				-1.5
2,794,128	-				-2.8
2,794,128	-				-1.5
2,794,128	-				-2.5
2,794,199	+		PFR28_02340	0.10	-2.0
2,794,433	+		PFR28_02340	0.24	-4.5
2,794,433	+		PFR28_02340	0.24	-0.3
2,794,493	+		PFR28_02340	0.28	-2.7
2,794,493	+		PFR28_02340	0.28	-2.1
2,794,493	+		PFR28_02340	0.28	+0.6
2,794,502	+		PFR28_02340	0.29	-2.7
2,794,502	+		PFR28_02340	0.29	-4.7
2,794,502	+		PFR28_02340	0.29	-0.9
2,794,502	+		PFR28_02340	0.29	-3.5
2,794,503	-		PFR28_02340	0.29	-4.0
2,794,503	-		PFR28_02340	0.29	-2.3
2,794,503	-		PFR28_02340	0.29	-2.0
2,794,503	-		PFR28_02340	0.29	-2.5
2,794,503	-		PFR28_02340	0.29	-2.6
2,794,503	-		PFR28_02340	0.29	-1.1
2,794,503	-		PFR28_02340	0.29	-2.0
2,794,505	+		PFR28_02340	0.29	-2.7
2,794,506	-		PFR28_02340	0.29	-3.3
2,794,572	-		PFR28_02340	0.33	-0.4
2,794,572	-		PFR28_02340	0.33	-4.1
2,794,572	-		PFR28_02340	0.33	-2.0
2,794,638	-		PFR28_02340	0.37	-3.0
2,794,638	-		PFR28_02340	0.37	-2.0
2,794,856	+		PFR28_02340	0.50	-1.0
2,794,943	+		PFR28_02340	0.56	-1.3
2,794,944	-		PFR28_02340	0.56	-3.1
2,794,950	-		PFR28_02340	0.56	-2.8
2,795,001	+		PFR28_02340	0.59	-1.6
2,795,024	+		PFR28_02340	0.61	-3.9
2,795,024	+		PFR28_02340	0.61	-2.8
2,795,024	+		PFR28_02340	0.61	-0.8
2,795,025	-		PFR28_02340	0.61	-4.3
2,795,025	-		PFR28_02340	0.61	-2.9
2,795,025	-		PFR28_02340	0.61	-1.7
2,795,025	-		PFR28_02340	0.61	-2.8
2,795,057	+		PFR28_02340	0.63	-1.8
2,795,058	-		PFR28_02340	0.63	-1.9
2,795,060	+		PFR28_02340	0.63	-3.2
2,795,060	+		PFR28_02340	0.63	-0.6
2,795,061	-		PFR28_02340	0.63	-1.4
2,795,061	-		PFR28_02340	0.63	-1.8
2,795,061	-		PFR28_02340	0.63	-4.6
2,795,064	+		PFR28_02340	0.63	-1.0
2,795,064	+		PFR28_02340	0.63	-2.6
2,795,064	+		PFR28_02340	0.63	-3.4
2,795,064	+		PFR28_02340	0.63	-3.1
2,795,064	+		PFR28_02340	0.63	-0.5
2,795,064	+		PFR28_02340	0.63	-0.9
2,795,090	+		PFR28_02340	0.65	-1.8
2,795,090	+		PFR28_02340	0.65	-3.9
2,795,090	+		PFR28_02340	0.65	-2.7
2,795,090	+		PFR28_02340	0.65	+1.9
2,795,091	-		PFR28_02340	0.65	-3.7
2,795,091	-		PFR28_02340	0.65	-1.5
2,795,091	-		PFR28_02340	0.65	+1.0
2,795,091	-		PFR28_02340	0.65	-1.0
2,795,105	+		PFR28_02340	0.66	-1.9
2,795,105	+		PFR28_02340	0.66	-3.3
2,795,178	-		PFR28_02340	0.70	-2.5
2,795,178	-		PFR28_02340	0.70	-1.3
2,795,178	-		PFR28_02340	0.70	-0.6
2,795,178	-		PFR28_02340	0.70	-2.8
2,795,189	+		PFR28_02340	0.71	-3.8
2,795,190	-		PFR28_02340	0.71	-1.3
2,795,192	+		PFR28_02340	0.71	-0.3
2,795,192	+		PFR28_02340	0.71	-1.1
2,795,192	+		PFR28_02340	0.71	-2.7
2,795,192	+		PFR28_02340	0.71	-3.9
2,795,192	+		PFR28_02340	0.71	-3.6
2,795,192	+		PFR28_02340	0.71	-3.7
2,795,192	+		PFR28_02340	0.71	-1.9
2,795,192	+		PFR28_02340	0.71	-3.8
2,795,192	+		PFR28_02340	0.71	-1.1
2,795,192	+		PFR28_02340	0.71	-0.8
2,795,192	+		PFR28_02340	0.71	-3.5
2,795,193	-		PFR28_02340	0.71	-2.3
2,795,193	-		PFR28_02340	0.71	-2.4
2,795,193	-		PFR28_02340	0.71	+1.5
2,795,193	-		PFR28_02340	0.71	-1.3
2,795,193	-		PFR28_02340	0.71	-3.3
2,795,193	-		PFR28_02340	0.71	-1.2
2,795,193	-		PFR28_02340	0.71	-2.8
2,795,225	+		PFR28_02340	0.73	-1.9
2,795,225	+		PFR28_02340	0.73	-0.8
2,795,225	+		PFR28_02340	0.73	-1.4
2,795,225	+		PFR28_02340	0.73	+0.3
2,795,226	-		PFR28_02340	0.73	-1.8
2,795,226	-		PFR28_02340	0.73	-3.1
2,795,255	+		PFR28_02340	0.75	-1.0
2,795,255	+		PFR28_02340	0.75	-1.4
2,795,427	-		PFR28_02340	0.86	-1.3
2,795,576	+				-1.6
2,795,576	+				-0.5
2,795,577	-				-2.4
2,795,577	-				-2.9
2,795,577	-				-2.6
2,795,577	-				-0.7
2,795,644	-				+0.8
2,795,729	-				+1.8
2,795,729	-				+1.7
2,795,814	+				-0.1
2,795,815	-				+0.4
2,795,851	+				+2.6
2,795,851	+				+1.7
2,795,852	-				+0.8
2,795,852	-				-1.5
2,795,853	+				-0.5
2,795,853	+				+0.8
2,795,853	+				+0.8
2,795,853	+				-0.5
2,795,853	+				+1.1
2,795,853	+				+0.1
2,795,853	+				+1.8
2,795,854	-				+0.7
2,795,854	-				+1.2
2,795,854	-				+1.2
2,795,854	-				+0.5
2,795,854	-				-1.0
2,795,857	+				+0.9
2,795,857	+				+0.8
2,795,857	+				-0.1
2,795,857	+				+0.3
2,795,857	+				-0.6
2,795,857	+				+0.1
2,795,858	-				+1.0
2,795,858	-				+2.0
2,795,858	-				-0.4
2,795,858	-				+0.3
2,795,888	+				+0.7
2,795,889	-				-0.1
2,795,965	-		PFR28_02341	0.13	+1.0
2,795,989	+		PFR28_02341	0.16	-0.7
2,795,989	+		PFR28_02341	0.16	-1.3
2,796,104	-		PFR28_02341	0.31	+0.7
2,796,139	+		PFR28_02341	0.35	-1.0
2,796,139	+		PFR28_02341	0.35	-1.5
2,796,140	-		PFR28_02341	0.36	+1.0
2,796,140	-		PFR28_02341	0.36	+1.5
2,796,140	-		PFR28_02341	0.36	+2.3
2,796,140	-		PFR28_02341	0.36	+1.8
2,796,140	-		PFR28_02341	0.36	+1.3
2,796,271	+		PFR28_02341	0.53	+1.1
2,796,271	+		PFR28_02341	0.53	-0.2
2,796,272	-		PFR28_02341	0.53	-0.0
2,796,272	-		PFR28_02341	0.53	+0.8
2,796,310	+		PFR28_02341	0.58	+1.8
2,796,310	+		PFR28_02341	0.58	-0.4
2,796,310	+		PFR28_02341	0.58	+0.6
2,796,311	-		PFR28_02341	0.58	+0.0
2,796,311	-		PFR28_02341	0.58	+0.9
2,796,311	-		PFR28_02341	0.58	+2.3
2,796,311	-		PFR28_02341	0.58	+3.1
2,796,311	-		PFR28_02341	0.58	+1.6
2,796,364	+		PFR28_02341	0.65	+1.3
2,796,365	-		PFR28_02341	0.65	-1.3
2,796,365	-		PFR28_02341	0.65	+0.3
2,796,365	-		PFR28_02341	0.65	+2.3
2,796,372	+		PFR28_02341	0.66	+1.1
2,796,372	+		PFR28_02341	0.66	+0.8
2,796,372	+		PFR28_02341	0.66	+0.0
2,796,372	+		PFR28_02341	0.66	-0.3
2,796,373	-		PFR28_02341	0.66	+0.8
2,796,373	-		PFR28_02341	0.66	+2.0
2,796,373	-		PFR28_02341	0.66	-0.4
2,796,373	-		PFR28_02341	0.66	+0.9
2,796,373	-		PFR28_02341	0.66	+0.8
2,796,373	-		PFR28_02341	0.66	+1.0
2,796,373	-		PFR28_02341	0.66	+0.9
2,796,373	-		PFR28_02341	0.66	+0.5
2,796,373	-		PFR28_02341	0.66	+1.8
2,796,376	+		PFR28_02341	0.66	-0.3
2,796,436	+		PFR28_02341	0.74	-1.0
2,796,436	+		PFR28_02341	0.74	-0.4
2,796,437	-		PFR28_02341	0.74	+2.2
2,796,437	-		PFR28_02341	0.74	+2.6
2,796,437	-		PFR28_02341	0.74	+1.3
2,796,437	-		PFR28_02341	0.74	+0.1
2,796,607	+				+0.7
2,796,608	-				+0.6
2,796,608	-				+0.7
2,796,608	-				+1.1