Strain Fitness in Pseudomonas sp. RS175 around PFR28_02336

Experiment: D-Trehalose (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose (C) 5 mM
2,789,242	-		PFR28_02335	0.64	-2.0
2,789,242	-		PFR28_02335	0.64	+0.5
2,789,366	+		PFR28_02335	0.76	+0.2
2,789,366	+		PFR28_02335	0.76	-1.4
2,789,367	-		PFR28_02335	0.76	+0.6
2,789,367	-		PFR28_02335	0.76	+0.0
2,789,367	-		PFR28_02335	0.76	-0.0
2,789,546	-				+0.6
2,789,580	-				+1.0
2,789,759	+				+1.0
2,789,762	+				-0.7
2,789,762	+				+0.1
2,789,762	+				+1.3
2,789,762	+				+0.1
2,789,762	+				-0.4
2,789,763	-				+0.2
2,789,763	-				+0.3
2,789,763	-				-0.4
2,789,763	-				+1.1
2,789,936	+				+0.3
2,789,936	+				+0.3
2,789,936	+				+0.4
2,789,936	+				+0.8
2,789,936	+				-0.7
2,789,937	-				+0.3
2,789,957	+				-0.0
2,789,958	-				-0.3
2,789,958	-				+0.3
2,790,107	+		PFR28_02336	0.15	-0.6
2,790,107	+		PFR28_02336	0.15	+1.0
2,790,107	+		PFR28_02336	0.15	-1.0
2,790,107	+		PFR28_02336	0.15	-0.1
2,790,108	-		PFR28_02336	0.15	+0.8
2,790,108	-		PFR28_02336	0.15	-0.7
2,790,108	-		PFR28_02336	0.15	+0.6
2,790,108	-		PFR28_02336	0.15	-0.8
2,790,272	+		PFR28_02336	0.25	-0.0
2,790,273	-		PFR28_02336	0.25	+0.9
2,790,293	+		PFR28_02336	0.26	+0.8
2,790,293	+		PFR28_02336	0.26	-1.3
2,790,293	+		PFR28_02336	0.26	+0.3
2,790,294	-		PFR28_02336	0.26	+0.4
2,790,305	+		PFR28_02336	0.27	-0.7
2,790,305	+		PFR28_02336	0.27	-0.0
2,790,306	-		PFR28_02336	0.27	-0.6
2,790,306	-		PFR28_02336	0.27	-1.3
2,790,306	-		PFR28_02336	0.27	+1.6
2,790,443	+		PFR28_02336	0.35	-1.0
2,790,444	-		PFR28_02336	0.35	-0.1
2,790,445	+		PFR28_02336	0.35	+0.0
2,790,445	+		PFR28_02336	0.35	-2.1
2,790,445	+		PFR28_02336	0.35	-1.0
2,790,446	-		PFR28_02336	0.35	+0.0
2,790,446	-		PFR28_02336	0.35	-0.5
2,790,653	+		PFR28_02336	0.47	-2.0
2,790,654	-		PFR28_02336	0.47	+0.2
2,790,716	+		PFR28_02336	0.51	-2.1
2,790,716	+		PFR28_02336	0.51	+0.7
2,790,716	+		PFR28_02336	0.51	+0.3
2,790,716	+		PFR28_02336	0.51	-0.3
2,790,716	+		PFR28_02336	0.51	+0.4
2,790,716	+		PFR28_02336	0.51	-0.1
2,790,716	+		PFR28_02336	0.51	-0.5
2,790,717	-		PFR28_02336	0.51	+0.4
2,790,717	-		PFR28_02336	0.51	+0.7
2,790,717	-		PFR28_02336	0.51	+0.9
2,790,717	-		PFR28_02336	0.51	+0.3
2,790,717	-		PFR28_02336	0.51	-0.1
2,790,879	+		PFR28_02336	0.60	-2.3
2,791,124	+		PFR28_02336	0.74	+0.4
2,791,124	+		PFR28_02336	0.74	-0.1
2,791,124	+		PFR28_02336	0.74	-0.7
2,791,124	+		PFR28_02336	0.74	-1.0
2,791,124	+		PFR28_02336	0.74	+0.2
2,791,125	-		PFR28_02336	0.74	+1.2
2,791,125	-		PFR28_02336	0.74	-1.8
2,791,125	-		PFR28_02336	0.74	-0.3
2,791,125	-		PFR28_02336	0.74	-1.4
2,791,148	-		PFR28_02336	0.76	+0.3
2,791,460	+				-0.8
2,791,461	-				-0.3
2,791,693	-		PFR28_02337	0.12	-1.8
2,792,053	+		PFR28_02337	0.54	+0.2
2,792,054	-		PFR28_02337	0.54	-0.2
2,792,340	+		PFR28_02337	0.87	-2.9
2,792,341	-		PFR28_02337	0.87	-0.5
2,792,493	-				-0.7
2,792,498	-				-2.4
2,792,533	+				-0.2
2,792,534	-				-0.6