Strain Fitness in Erwinia amylovora T8 around OLJFJH_17745

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:17;Samp:23-7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_17740 and OLJFJH_17745 are separated by 101 nucleotidesOLJFJH_17745 and OLJFJH_17750 are separated by 90 nucleotides OLJFJH_17740: OLJFJH_17740 - MFS transporter, at 3,730,063 to 3,731,262 _17740 OLJFJH_17745: OLJFJH_17745 - hypothetical protein, at 3,731,364 to 3,731,459 _17745 OLJFJH_17750: OLJFJH_17750 - Kef family K(+) transporter, at 3,731,550 to 3,733,235 _17750 Position (kb) 3731 3732Strain fitness (log2 ratio) -2 -1 0 1 2at 3730.384 kb on + strand, within OLJFJH_17740at 3730.384 kb on + strand, within OLJFJH_17740at 3730.385 kb on - strand, within OLJFJH_17740at 3730.527 kb on + strand, within OLJFJH_17740at 3730.570 kb on + strand, within OLJFJH_17740at 3730.626 kb on - strand, within OLJFJH_17740at 3730.718 kb on + strand, within OLJFJH_17740at 3730.768 kb on + strand, within OLJFJH_17740at 3730.769 kb on - strand, within OLJFJH_17740at 3730.792 kb on + strand, within OLJFJH_17740at 3730.792 kb on + strand, within OLJFJH_17740at 3730.793 kb on - strand, within OLJFJH_17740at 3730.793 kb on - strand, within OLJFJH_17740at 3730.793 kb on - strand, within OLJFJH_17740at 3730.793 kb on - strand, within OLJFJH_17740at 3730.794 kb on + strand, within OLJFJH_17740at 3730.795 kb on - strand, within OLJFJH_17740at 3730.801 kb on + strand, within OLJFJH_17740at 3730.801 kb on + strand, within OLJFJH_17740at 3730.802 kb on - strand, within OLJFJH_17740at 3730.805 kb on + strand, within OLJFJH_17740at 3730.812 kb on + strand, within OLJFJH_17740at 3730.813 kb on - strand, within OLJFJH_17740at 3730.813 kb on - strand, within OLJFJH_17740at 3730.844 kb on + strand, within OLJFJH_17740at 3730.844 kb on + strand, within OLJFJH_17740at 3730.844 kb on + strand, within OLJFJH_17740at 3730.845 kb on - strand, within OLJFJH_17740at 3730.845 kb on - strand, within OLJFJH_17740at 3730.845 kb on - strand, within OLJFJH_17740at 3730.845 kb on - strand, within OLJFJH_17740at 3730.988 kb on + strand, within OLJFJH_17740at 3730.989 kb on - strand, within OLJFJH_17740at 3730.989 kb on - strand, within OLJFJH_17740at 3731.151 kb on - strandat 3731.269 kb on - strandat 3731.426 kb on - strand, within OLJFJH_17745at 3731.499 kb on + strandat 3731.499 kb on + strandat 3731.597 kb on - strandat 3731.615 kb on + strandat 3731.616 kb on - strandat 3731.747 kb on - strand, within OLJFJH_17750at 3731.944 kb on + strand, within OLJFJH_17750at 3731.944 kb on + strand, within OLJFJH_17750at 3731.971 kb on + strand, within OLJFJH_17750at 3731.981 kb on + strand, within OLJFJH_17750at 3732.049 kb on + strand, within OLJFJH_17750at 3732.147 kb on - strand, within OLJFJH_17750at 3732.368 kb on + strand, within OLJFJH_17750at 3732.369 kb on - strand, within OLJFJH_17750at 3732.397 kb on + strand, within OLJFJH_17750at 3732.398 kb on - strand, within OLJFJH_17750

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:17;Samp:23-7
remove
3,730,384 + OLJFJH_17740 0.27 -1.0
3,730,384 + OLJFJH_17740 0.27 +0.0
3,730,385 - OLJFJH_17740 0.27 +0.3
3,730,527 + OLJFJH_17740 0.39 +0.9
3,730,570 + OLJFJH_17740 0.42 -1.4
3,730,626 - OLJFJH_17740 0.47 +1.1
3,730,718 + OLJFJH_17740 0.55 +1.8
3,730,768 + OLJFJH_17740 0.59 -0.3
3,730,769 - OLJFJH_17740 0.59 -0.3
3,730,792 + OLJFJH_17740 0.61 +1.1
3,730,792 + OLJFJH_17740 0.61 +0.1
3,730,793 - OLJFJH_17740 0.61 -0.2
3,730,793 - OLJFJH_17740 0.61 +0.3
3,730,793 - OLJFJH_17740 0.61 -0.4
3,730,793 - OLJFJH_17740 0.61 -1.0
3,730,794 + OLJFJH_17740 0.61 -2.0
3,730,795 - OLJFJH_17740 0.61 -0.5
3,730,801 + OLJFJH_17740 0.61 -0.7
3,730,801 + OLJFJH_17740 0.61 +0.4
3,730,802 - OLJFJH_17740 0.62 +0.8
3,730,805 + OLJFJH_17740 0.62 -0.1
3,730,812 + OLJFJH_17740 0.62 +0.7
3,730,813 - OLJFJH_17740 0.62 +0.6
3,730,813 - OLJFJH_17740 0.62 -0.4
3,730,844 + OLJFJH_17740 0.65 -0.5
3,730,844 + OLJFJH_17740 0.65 +0.4
3,730,844 + OLJFJH_17740 0.65 +0.9
3,730,845 - OLJFJH_17740 0.65 +0.5
3,730,845 - OLJFJH_17740 0.65 -2.1
3,730,845 - OLJFJH_17740 0.65 +0.9
3,730,845 - OLJFJH_17740 0.65 -0.9
3,730,988 + OLJFJH_17740 0.77 -0.3
3,730,989 - OLJFJH_17740 0.77 -0.8
3,730,989 - OLJFJH_17740 0.77 -2.4
3,731,151 - -0.2
3,731,269 - +0.1
3,731,426 - OLJFJH_17745 0.65 -0.7
3,731,499 + -0.1
3,731,499 + +0.5
3,731,597 - +0.2
3,731,615 + -2.3
3,731,616 - -0.2
3,731,747 - OLJFJH_17750 0.12 +0.1
3,731,944 + OLJFJH_17750 0.23 -0.5
3,731,944 + OLJFJH_17750 0.23 -0.2
3,731,971 + OLJFJH_17750 0.25 -0.4
3,731,981 + OLJFJH_17750 0.26 +0.2
3,732,049 + OLJFJH_17750 0.30 -0.5
3,732,147 - OLJFJH_17750 0.35 -0.7
3,732,368 + OLJFJH_17750 0.49 -2.2
3,732,369 - OLJFJH_17750 0.49 -0.9
3,732,397 + OLJFJH_17750 0.50 -0.0
3,732,398 - OLJFJH_17750 0.50 +0.4

Or see this region's nucleotide sequence