Strain Fitness in Erwinia amylovora T8 around OLJFJH_07870

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:17;Samp:23-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_07865 and OLJFJH_07870 are separated by 497 nucleotidesOLJFJH_07870 and OLJFJH_07875 are separated by 54 nucleotidesOLJFJH_07875 and OLJFJH_07880 are separated by 196 nucleotides OLJFJH_07865: OLJFJH_07865 - polyketide synthase, at 1,626,986 to 1,627,552 _07865 OLJFJH_07870: OLJFJH_07870 - GntR family transcriptional regulator, at 1,628,050 to 1,629,462 _07870 OLJFJH_07875: OLJFJH_07875 - Membrane protein, at 1,629,517 to 1,629,999 _07875 OLJFJH_07880: OLJFJH_07880 - Conserved uncharacterized protein, at 1,630,196 to 1,631,188 _07880 Position (kb) 1628 1629 1630Strain fitness (log2 ratio) -3 -2 -1 0 1at 1627.080 kb on + strand, within OLJFJH_07865at 1627.130 kb on - strand, within OLJFJH_07865at 1627.176 kb on + strand, within OLJFJH_07865at 1627.177 kb on - strand, within OLJFJH_07865at 1627.242 kb on + strand, within OLJFJH_07865at 1627.242 kb on + strand, within OLJFJH_07865at 1627.242 kb on + strand, within OLJFJH_07865at 1627.243 kb on - strand, within OLJFJH_07865at 1627.243 kb on - strand, within OLJFJH_07865at 1627.243 kb on - strand, within OLJFJH_07865at 1627.245 kb on - strand, within OLJFJH_07865at 1627.287 kb on + strand, within OLJFJH_07865at 1627.288 kb on - strand, within OLJFJH_07865at 1627.288 kb on - strand, within OLJFJH_07865at 1627.288 kb on - strand, within OLJFJH_07865at 1627.309 kb on + strand, within OLJFJH_07865at 1627.314 kb on + strand, within OLJFJH_07865at 1627.314 kb on + strand, within OLJFJH_07865at 1627.314 kb on + strand, within OLJFJH_07865at 1627.314 kb on + strand, within OLJFJH_07865at 1627.315 kb on - strand, within OLJFJH_07865at 1627.315 kb on - strand, within OLJFJH_07865at 1627.318 kb on + strand, within OLJFJH_07865at 1627.319 kb on - strand, within OLJFJH_07865at 1627.504 kb on + strandat 1627.505 kb on - strandat 1627.505 kb on - strandat 1627.505 kb on - strandat 1627.663 kb on + strandat 1627.663 kb on + strandat 1627.722 kb on + strandat 1627.772 kb on + strandat 1627.774 kb on + strandat 1627.775 kb on - strandat 1627.833 kb on - strandat 1627.905 kb on + strandat 1627.964 kb on + strandat 1627.965 kb on - strandat 1627.965 kb on - strandat 1628.007 kb on + strandat 1628.007 kb on + strandat 1628.007 kb on + strandat 1628.007 kb on + strandat 1628.007 kb on + strandat 1628.008 kb on - strandat 1628.008 kb on - strandat 1628.008 kb on - strandat 1628.008 kb on - strandat 1628.008 kb on - strandat 1628.009 kb on + strandat 1628.009 kb on + strandat 1628.009 kb on + strandat 1628.010 kb on - strandat 1628.010 kb on - strandat 1628.010 kb on - strandat 1628.011 kb on + strandat 1628.011 kb on + strandat 1628.011 kb on + strandat 1628.011 kb on + strandat 1628.012 kb on - strandat 1628.031 kb on - strandat 1628.042 kb on - strandat 1628.060 kb on - strandat 1628.161 kb on - strandat 1628.188 kb on + strandat 1628.240 kb on - strand, within OLJFJH_07870at 1628.243 kb on + strand, within OLJFJH_07870at 1628.243 kb on + strand, within OLJFJH_07870at 1628.243 kb on + strand, within OLJFJH_07870at 1628.243 kb on + strand, within OLJFJH_07870at 1628.243 kb on + strand, within OLJFJH_07870at 1628.243 kb on + strand, within OLJFJH_07870at 1628.244 kb on - strand, within OLJFJH_07870at 1628.244 kb on - strand, within OLJFJH_07870at 1628.244 kb on - strand, within OLJFJH_07870at 1628.295 kb on - strand, within OLJFJH_07870at 1628.295 kb on - strand, within OLJFJH_07870at 1628.452 kb on - strand, within OLJFJH_07870at 1628.452 kb on - strand, within OLJFJH_07870at 1628.475 kb on + strand, within OLJFJH_07870at 1628.685 kb on + strand, within OLJFJH_07870at 1628.817 kb on + strand, within OLJFJH_07870at 1628.897 kb on - strand, within OLJFJH_07870at 1628.897 kb on - strand, within OLJFJH_07870at 1628.908 kb on + strand, within OLJFJH_07870at 1628.909 kb on - strand, within OLJFJH_07870at 1629.112 kb on + strand, within OLJFJH_07870at 1629.112 kb on + strand, within OLJFJH_07870at 1629.130 kb on + strand, within OLJFJH_07870at 1629.162 kb on - strand, within OLJFJH_07870at 1629.206 kb on - strand, within OLJFJH_07870at 1629.279 kb on + strand, within OLJFJH_07870at 1629.280 kb on - strand, within OLJFJH_07870at 1629.282 kb on + strand, within OLJFJH_07870at 1629.283 kb on - strand, within OLJFJH_07870at 1629.283 kb on - strand, within OLJFJH_07870at 1629.283 kb on - strand, within OLJFJH_07870at 1629.283 kb on - strand, within OLJFJH_07870at 1629.298 kb on + strand, within OLJFJH_07870at 1629.298 kb on + strand, within OLJFJH_07870at 1629.315 kb on + strand, within OLJFJH_07870at 1629.316 kb on - strand, within OLJFJH_07870at 1629.316 kb on - strand, within OLJFJH_07870at 1629.318 kb on + strand, within OLJFJH_07870at 1629.319 kb on - strand, within OLJFJH_07870at 1629.362 kb on - strandat 1629.371 kb on - strandat 1629.371 kb on - strandat 1629.486 kb on - strandat 1629.505 kb on + strandat 1629.506 kb on - strandat 1629.679 kb on + strand, within OLJFJH_07875at 1629.679 kb on + strand, within OLJFJH_07875at 1629.683 kb on + strand, within OLJFJH_07875at 1629.684 kb on - strand, within OLJFJH_07875at 1629.684 kb on - strand, within OLJFJH_07875at 1629.687 kb on - strand, within OLJFJH_07875at 1629.687 kb on - strand, within OLJFJH_07875at 1629.701 kb on + strand, within OLJFJH_07875at 1629.701 kb on + strand, within OLJFJH_07875at 1629.701 kb on + strand, within OLJFJH_07875at 1629.702 kb on - strand, within OLJFJH_07875at 1629.872 kb on + strand, within OLJFJH_07875at 1629.873 kb on - strand, within OLJFJH_07875at 1629.873 kb on - strand, within OLJFJH_07875at 1629.873 kb on - strand, within OLJFJH_07875at 1629.956 kb on - strandat 1629.961 kb on - strandat 1630.002 kb on + strandat 1630.002 kb on + strandat 1630.002 kb on + strandat 1630.002 kb on + strandat 1630.003 kb on - strandat 1630.003 kb on - strandat 1630.003 kb on - strandat 1630.004 kb on + strandat 1630.004 kb on + strandat 1630.005 kb on - strandat 1630.034 kb on + strandat 1630.037 kb on + strandat 1630.057 kb on - strandat 1630.082 kb on + strandat 1630.087 kb on + strandat 1630.087 kb on + strandat 1630.088 kb on - strandat 1630.142 kb on + strandat 1630.143 kb on - strandat 1630.221 kb on + strandat 1630.222 kb on - strandat 1630.224 kb on + strandat 1630.288 kb on - strandat 1630.301 kb on + strand, within OLJFJH_07880at 1630.302 kb on - strand, within OLJFJH_07880at 1630.312 kb on + strand, within OLJFJH_07880at 1630.344 kb on + strand, within OLJFJH_07880at 1630.344 kb on + strand, within OLJFJH_07880at 1630.344 kb on + strand, within OLJFJH_07880at 1630.345 kb on - strand, within OLJFJH_07880at 1630.345 kb on - strand, within OLJFJH_07880at 1630.345 kb on - strand, within OLJFJH_07880at 1630.346 kb on + strand, within OLJFJH_07880at 1630.346 kb on + strand, within OLJFJH_07880at 1630.346 kb on + strand, within OLJFJH_07880at 1630.347 kb on - strand, within OLJFJH_07880at 1630.347 kb on - strand, within OLJFJH_07880at 1630.347 kb on - strand, within OLJFJH_07880at 1630.347 kb on - strand, within OLJFJH_07880at 1630.347 kb on - strand, within OLJFJH_07880at 1630.348 kb on + strand, within OLJFJH_07880at 1630.348 kb on + strand, within OLJFJH_07880at 1630.348 kb on + strand, within OLJFJH_07880at 1630.348 kb on + strand, within OLJFJH_07880at 1630.348 kb on + strand, within OLJFJH_07880at 1630.348 kb on + strand, within OLJFJH_07880at 1630.348 kb on + strand, within OLJFJH_07880at 1630.348 kb on + strand, within OLJFJH_07880at 1630.348 kb on + strand, within OLJFJH_07880at 1630.349 kb on - strand, within OLJFJH_07880at 1630.349 kb on - strand, within OLJFJH_07880at 1630.349 kb on - strand, within OLJFJH_07880at 1630.349 kb on - strand, within OLJFJH_07880at 1630.349 kb on - strand, within OLJFJH_07880at 1630.349 kb on - strand, within OLJFJH_07880at 1630.349 kb on - strand, within OLJFJH_07880at 1630.349 kb on - strand, within OLJFJH_07880at 1630.432 kb on + strand, within OLJFJH_07880at 1630.432 kb on + strand, within OLJFJH_07880at 1630.439 kb on - strand, within OLJFJH_07880at 1630.460 kb on + strand, within OLJFJH_07880at 1630.460 kb on + strand, within OLJFJH_07880at 1630.460 kb on + strand, within OLJFJH_07880

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:17;Samp:23-7
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1,627,080 + OLJFJH_07865 0.17 -0.3
1,627,130 - OLJFJH_07865 0.25 -0.2
1,627,176 + OLJFJH_07865 0.34 +0.1
1,627,177 - OLJFJH_07865 0.34 -0.1
1,627,242 + OLJFJH_07865 0.45 -0.4
1,627,242 + OLJFJH_07865 0.45 +0.8
1,627,242 + OLJFJH_07865 0.45 +0.4
1,627,243 - OLJFJH_07865 0.45 +0.1
1,627,243 - OLJFJH_07865 0.45 -0.7
1,627,243 - OLJFJH_07865 0.45 +0.7
1,627,245 - OLJFJH_07865 0.46 +0.0
1,627,287 + OLJFJH_07865 0.53 -0.5
1,627,288 - OLJFJH_07865 0.53 -1.2
1,627,288 - OLJFJH_07865 0.53 +0.2
1,627,288 - OLJFJH_07865 0.53 +0.2
1,627,309 + OLJFJH_07865 0.57 -0.1
1,627,314 + OLJFJH_07865 0.58 +0.3
1,627,314 + OLJFJH_07865 0.58 +0.7
1,627,314 + OLJFJH_07865 0.58 -0.7
1,627,314 + OLJFJH_07865 0.58 -0.8
1,627,315 - OLJFJH_07865 0.58 -0.2
1,627,315 - OLJFJH_07865 0.58 +0.3
1,627,318 + OLJFJH_07865 0.59 +1.0
1,627,319 - OLJFJH_07865 0.59 -0.3
1,627,504 + +0.5
1,627,505 - +0.0
1,627,505 - +0.1
1,627,505 - +0.3
1,627,663 + +0.8
1,627,663 + +0.0
1,627,722 + -0.1
1,627,772 + +0.1
1,627,774 + +0.6
1,627,775 - -0.3
1,627,833 - -0.1
1,627,905 + -0.6
1,627,964 + -0.4
1,627,965 - +0.7
1,627,965 - +0.3
1,628,007 + +0.2
1,628,007 + -1.1
1,628,007 + +0.5
1,628,007 + -0.8
1,628,007 + -0.6
1,628,008 - +0.4
1,628,008 - -0.0
1,628,008 - +0.5
1,628,008 - -0.2
1,628,008 - +0.2
1,628,009 + -0.3
1,628,009 + -0.8
1,628,009 + -0.3
1,628,010 - +0.5
1,628,010 - -0.7
1,628,010 - -0.5
1,628,011 + +0.7
1,628,011 + -0.4
1,628,011 + +0.2
1,628,011 + +0.3
1,628,012 - -1.0
1,628,031 - -1.0
1,628,042 - -0.6
1,628,060 - -0.5
1,628,161 - -0.3
1,628,188 + -0.6
1,628,240 - OLJFJH_07870 0.13 -1.0
1,628,243 + OLJFJH_07870 0.14 -2.8
1,628,243 + OLJFJH_07870 0.14 -1.3
1,628,243 + OLJFJH_07870 0.14 -1.2
1,628,243 + OLJFJH_07870 0.14 -1.1
1,628,243 + OLJFJH_07870 0.14 -1.6
1,628,243 + OLJFJH_07870 0.14 -0.3
1,628,244 - OLJFJH_07870 0.14 +0.0
1,628,244 - OLJFJH_07870 0.14 -2.0
1,628,244 - OLJFJH_07870 0.14 -1.4
1,628,295 - OLJFJH_07870 0.17 -0.9
1,628,295 - OLJFJH_07870 0.17 -0.8
1,628,452 - OLJFJH_07870 0.28 -0.5
1,628,452 - OLJFJH_07870 0.28 -1.0
1,628,475 + OLJFJH_07870 0.30 -0.3
1,628,685 + OLJFJH_07870 0.45 -0.8
1,628,817 + OLJFJH_07870 0.54 -0.3
1,628,897 - OLJFJH_07870 0.60 +0.4
1,628,897 - OLJFJH_07870 0.60 -0.3
1,628,908 + OLJFJH_07870 0.61 -0.8
1,628,909 - OLJFJH_07870 0.61 -0.2
1,629,112 + OLJFJH_07870 0.75 -0.8
1,629,112 + OLJFJH_07870 0.75 +0.4
1,629,130 + OLJFJH_07870 0.76 -0.8
1,629,162 - OLJFJH_07870 0.79 -1.4
1,629,206 - OLJFJH_07870 0.82 +0.0
1,629,279 + OLJFJH_07870 0.87 -0.4
1,629,280 - OLJFJH_07870 0.87 -1.5
1,629,282 + OLJFJH_07870 0.87 -0.1
1,629,283 - OLJFJH_07870 0.87 -1.2
1,629,283 - OLJFJH_07870 0.87 +0.5
1,629,283 - OLJFJH_07870 0.87 -1.7
1,629,283 - OLJFJH_07870 0.87 -0.0
1,629,298 + OLJFJH_07870 0.88 +0.0
1,629,298 + OLJFJH_07870 0.88 -1.1
1,629,315 + OLJFJH_07870 0.90 -1.0
1,629,316 - OLJFJH_07870 0.90 -1.2
1,629,316 - OLJFJH_07870 0.90 -0.4
1,629,318 + OLJFJH_07870 0.90 -0.5
1,629,319 - OLJFJH_07870 0.90 -0.4
1,629,362 - -0.1
1,629,371 - -0.4
1,629,371 - -0.0
1,629,486 - -0.1
1,629,505 + -1.2
1,629,506 - +0.2
1,629,679 + OLJFJH_07875 0.34 -1.0
1,629,679 + OLJFJH_07875 0.34 -1.3
1,629,683 + OLJFJH_07875 0.34 -1.6
1,629,684 - OLJFJH_07875 0.35 -0.6
1,629,684 - OLJFJH_07875 0.35 -0.5
1,629,687 - OLJFJH_07875 0.35 -1.5
1,629,687 - OLJFJH_07875 0.35 +0.4
1,629,701 + OLJFJH_07875 0.38 -0.9
1,629,701 + OLJFJH_07875 0.38 -0.9
1,629,701 + OLJFJH_07875 0.38 +0.0
1,629,702 - OLJFJH_07875 0.38 +0.4
1,629,872 + OLJFJH_07875 0.73 -1.2
1,629,873 - OLJFJH_07875 0.74 -0.3
1,629,873 - OLJFJH_07875 0.74 -0.1
1,629,873 - OLJFJH_07875 0.74 -1.1
1,629,956 - -1.1
1,629,961 - +0.4
1,630,002 + -0.3
1,630,002 + -0.8
1,630,002 + -1.7
1,630,002 + +1.3
1,630,003 - -0.2
1,630,003 - -1.6
1,630,003 - -0.9
1,630,004 + +0.1
1,630,004 + -1.0
1,630,005 - +0.0
1,630,034 + -0.6
1,630,037 + -1.7
1,630,057 - +0.0
1,630,082 + -0.5
1,630,087 + -0.3
1,630,087 + -0.4
1,630,088 - +0.9
1,630,142 + -0.1
1,630,143 - -0.5
1,630,221 + -0.4
1,630,222 - +0.2
1,630,224 + -1.8
1,630,288 - -0.8
1,630,301 + OLJFJH_07880 0.11 -0.1
1,630,302 - OLJFJH_07880 0.11 +0.5
1,630,312 + OLJFJH_07880 0.12 -0.2
1,630,344 + OLJFJH_07880 0.15 -0.6
1,630,344 + OLJFJH_07880 0.15 +0.1
1,630,344 + OLJFJH_07880 0.15 -0.4
1,630,345 - OLJFJH_07880 0.15 -0.7
1,630,345 - OLJFJH_07880 0.15 -0.2
1,630,345 - OLJFJH_07880 0.15 -1.0
1,630,346 + OLJFJH_07880 0.15 +0.6
1,630,346 + OLJFJH_07880 0.15 -0.1
1,630,346 + OLJFJH_07880 0.15 +0.1
1,630,347 - OLJFJH_07880 0.15 -0.5
1,630,347 - OLJFJH_07880 0.15 -0.5
1,630,347 - OLJFJH_07880 0.15 -0.4
1,630,347 - OLJFJH_07880 0.15 +0.1
1,630,347 - OLJFJH_07880 0.15 -0.3
1,630,348 + OLJFJH_07880 0.15 -0.6
1,630,348 + OLJFJH_07880 0.15 +1.5
1,630,348 + OLJFJH_07880 0.15 +0.0
1,630,348 + OLJFJH_07880 0.15 +0.4
1,630,348 + OLJFJH_07880 0.15 -0.0
1,630,348 + OLJFJH_07880 0.15 -0.9
1,630,348 + OLJFJH_07880 0.15 -0.2
1,630,348 + OLJFJH_07880 0.15 -0.2
1,630,348 + OLJFJH_07880 0.15 -0.5
1,630,349 - OLJFJH_07880 0.15 -0.3
1,630,349 - OLJFJH_07880 0.15 -0.1
1,630,349 - OLJFJH_07880 0.15 +0.8
1,630,349 - OLJFJH_07880 0.15 -0.5
1,630,349 - OLJFJH_07880 0.15 +0.7
1,630,349 - OLJFJH_07880 0.15 +0.5
1,630,349 - OLJFJH_07880 0.15 -0.2
1,630,349 - OLJFJH_07880 0.15 -0.4
1,630,432 + OLJFJH_07880 0.24 +0.2
1,630,432 + OLJFJH_07880 0.24 -0.1
1,630,439 - OLJFJH_07880 0.24 -0.2
1,630,460 + OLJFJH_07880 0.27 -0.3
1,630,460 + OLJFJH_07880 0.27 -1.4
1,630,460 + OLJFJH_07880 0.27 -1.1

Or see this region's nucleotide sequence