Strain Fitness in Erwinia amylovora T8 around OLJFJH_07035

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:17;Samp:23-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_07030 and OLJFJH_07035 are separated by 986 nucleotidesOLJFJH_07035 and OLJFJH_07040 overlap by 4 nucleotidesOLJFJH_07040 and OLJFJH_07045 are separated by 682 nucleotides OLJFJH_07030: OLJFJH_07030 - glutamate synthase large subunit, at 1,431,535 to 1,437,069 _07030 OLJFJH_07035: OLJFJH_07035 - aerobic respiration two-component sensor histidine kinase ArcB, at 1,438,056 to 1,440,395 _07035 OLJFJH_07040: OLJFJH_07040 - hypothetical protein, at 1,440,392 to 1,440,502 _07040 OLJFJH_07045: OLJFJH_07045 - monofunctional biosynthetic peptidoglycan transglycosylase, at 1,441,185 to 1,441,910 _07045 Position (kb) 1438 1439 1440 1441Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1437.097 kb on + strandat 1437.149 kb on + strandat 1437.149 kb on + strandat 1437.149 kb on + strandat 1437.210 kb on - strandat 1437.266 kb on + strandat 1437.352 kb on + strandat 1437.404 kb on - strandat 1437.408 kb on - strandat 1437.481 kb on + strandat 1437.482 kb on - strandat 1437.485 kb on + strandat 1437.485 kb on + strandat 1437.485 kb on + strandat 1437.485 kb on + strandat 1437.485 kb on + strandat 1437.486 kb on - strandat 1437.486 kb on - strandat 1437.486 kb on - strandat 1437.486 kb on - strandat 1437.505 kb on + strandat 1437.505 kb on + strandat 1437.505 kb on + strandat 1437.505 kb on + strandat 1437.506 kb on - strandat 1437.506 kb on - strandat 1437.536 kb on - strandat 1437.625 kb on - strandat 1437.653 kb on - strandat 1437.653 kb on - strandat 1437.782 kb on + strandat 1437.912 kb on + strandat 1437.912 kb on + strandat 1437.939 kb on - strandat 1438.053 kb on + strandat 1438.053 kb on + strandat 1438.053 kb on + strandat 1438.053 kb on + strandat 1438.053 kb on + strandat 1438.053 kb on + strandat 1438.054 kb on - strandat 1438.054 kb on - strandat 1438.054 kb on - strandat 1438.054 kb on - strandat 1438.054 kb on - strandat 1438.056 kb on - strandat 1438.056 kb on - strandat 1438.056 kb on - strandat 1438.096 kb on + strandat 1438.114 kb on + strandat 1438.267 kb on - strandat 1438.421 kb on + strand, within OLJFJH_07035at 1438.422 kb on - strand, within OLJFJH_07035at 1438.424 kb on + strand, within OLJFJH_07035at 1438.425 kb on - strand, within OLJFJH_07035at 1438.498 kb on + strand, within OLJFJH_07035at 1438.563 kb on + strand, within OLJFJH_07035at 1439.013 kb on + strand, within OLJFJH_07035at 1439.415 kb on + strand, within OLJFJH_07035at 1439.415 kb on + strand, within OLJFJH_07035at 1439.416 kb on - strand, within OLJFJH_07035at 1439.416 kb on - strand, within OLJFJH_07035at 1439.416 kb on - strand, within OLJFJH_07035at 1439.416 kb on - strand, within OLJFJH_07035at 1439.744 kb on + strand, within OLJFJH_07035at 1440.058 kb on + strand, within OLJFJH_07035at 1440.075 kb on + strand, within OLJFJH_07035at 1440.075 kb on + strand, within OLJFJH_07035at 1440.076 kb on - strand, within OLJFJH_07035at 1440.076 kb on - strand, within OLJFJH_07035at 1440.077 kb on + strand, within OLJFJH_07035at 1440.077 kb on + strand, within OLJFJH_07035at 1440.077 kb on + strand, within OLJFJH_07035at 1440.078 kb on - strand, within OLJFJH_07035at 1440.329 kb on + strandat 1440.448 kb on + strand, within OLJFJH_07040at 1440.466 kb on + strand, within OLJFJH_07040at 1440.467 kb on - strand, within OLJFJH_07040at 1440.507 kb on + strandat 1440.523 kb on + strandat 1440.528 kb on + strandat 1440.814 kb on + strandat 1440.836 kb on - strandat 1440.874 kb on - strandat 1440.941 kb on + strandat 1441.182 kb on + strandat 1441.182 kb on + strandat 1441.182 kb on + strandat 1441.233 kb on - strandat 1441.261 kb on + strand, within OLJFJH_07045at 1441.262 kb on - strand, within OLJFJH_07045at 1441.262 kb on - strand, within OLJFJH_07045at 1441.362 kb on + strand, within OLJFJH_07045at 1441.362 kb on + strand, within OLJFJH_07045at 1441.362 kb on + strand, within OLJFJH_07045at 1441.363 kb on - strand, within OLJFJH_07045at 1441.363 kb on - strand, within OLJFJH_07045

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:17;Samp:23-7
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1,437,097 + -1.2
1,437,149 + -0.2
1,437,149 + -0.2
1,437,149 + -1.8
1,437,210 - -0.2
1,437,266 + -0.3
1,437,352 + +0.9
1,437,404 - +0.5
1,437,408 - +0.3
1,437,481 + +0.7
1,437,482 - +0.5
1,437,485 + +0.1
1,437,485 + +0.4
1,437,485 + -0.5
1,437,485 + +0.2
1,437,485 + +0.1
1,437,486 - +0.2
1,437,486 - +0.2
1,437,486 - -1.2
1,437,486 - +0.7
1,437,505 + -0.2
1,437,505 + -0.5
1,437,505 + +0.3
1,437,505 + -1.0
1,437,506 - -0.2
1,437,506 - -0.1
1,437,536 - +0.8
1,437,625 - -1.3
1,437,653 - +0.4
1,437,653 - +0.6
1,437,782 + -0.5
1,437,912 + -0.2
1,437,912 + +2.0
1,437,939 - +1.0
1,438,053 + -0.4
1,438,053 + +0.0
1,438,053 + -0.2
1,438,053 + -0.1
1,438,053 + -0.2
1,438,053 + -0.1
1,438,054 - -2.1
1,438,054 - -4.1
1,438,054 - +0.2
1,438,054 - -1.8
1,438,054 - -1.7
1,438,056 - +0.1
1,438,056 - +1.6
1,438,056 - -1.7
1,438,096 + -1.4
1,438,114 + +0.0
1,438,267 - -1.8
1,438,421 + OLJFJH_07035 0.16 +1.1
1,438,422 - OLJFJH_07035 0.16 -1.1
1,438,424 + OLJFJH_07035 0.16 -1.2
1,438,425 - OLJFJH_07035 0.16 -1.5
1,438,498 + OLJFJH_07035 0.19 -1.1
1,438,563 + OLJFJH_07035 0.22 -0.5
1,439,013 + OLJFJH_07035 0.41 -0.5
1,439,415 + OLJFJH_07035 0.58 -2.0
1,439,415 + OLJFJH_07035 0.58 -0.3
1,439,416 - OLJFJH_07035 0.58 -1.3
1,439,416 - OLJFJH_07035 0.58 -1.7
1,439,416 - OLJFJH_07035 0.58 -0.4
1,439,416 - OLJFJH_07035 0.58 -0.7
1,439,744 + OLJFJH_07035 0.72 -1.1
1,440,058 + OLJFJH_07035 0.86 -0.3
1,440,075 + OLJFJH_07035 0.86 -0.9
1,440,075 + OLJFJH_07035 0.86 -1.3
1,440,076 - OLJFJH_07035 0.86 -1.7
1,440,076 - OLJFJH_07035 0.86 -0.1
1,440,077 + OLJFJH_07035 0.86 +0.5
1,440,077 + OLJFJH_07035 0.86 -1.1
1,440,077 + OLJFJH_07035 0.86 -0.5
1,440,078 - OLJFJH_07035 0.86 +0.2
1,440,329 + -2.0
1,440,448 + OLJFJH_07040 0.50 +1.5
1,440,466 + OLJFJH_07040 0.67 +0.1
1,440,467 - OLJFJH_07040 0.68 +0.4
1,440,507 + -0.1
1,440,523 + +0.1
1,440,528 + +0.0
1,440,814 + +0.1
1,440,836 - -0.0
1,440,874 - -0.5
1,440,941 + +0.4
1,441,182 + -1.0
1,441,182 + -0.8
1,441,182 + +0.2
1,441,233 - -0.3
1,441,261 + OLJFJH_07045 0.10 +1.3
1,441,262 - OLJFJH_07045 0.11 -1.9
1,441,262 - OLJFJH_07045 0.11 +0.4
1,441,362 + OLJFJH_07045 0.24 +0.4
1,441,362 + OLJFJH_07045 0.24 +0.3
1,441,362 + OLJFJH_07045 0.24 +0.1
1,441,363 - OLJFJH_07045 0.25 -0.8
1,441,363 - OLJFJH_07045 0.25 +0.8

Or see this region's nucleotide sequence