Strain Fitness in Erwinia amylovora T8 around OLJFJH_05525

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:17;Samp:23-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_05515 and OLJFJH_05520 are separated by 3 nucleotidesOLJFJH_05520 and OLJFJH_05525 overlap by 4 nucleotidesOLJFJH_05525 and OLJFJH_05530 are separated by 59 nucleotides OLJFJH_05515: OLJFJH_05515 - glucose-1-phosphatase, at 1,123,050 to 1,123,661 _05515 OLJFJH_05520: OLJFJH_05520 - virulence factor BrkB family protein, at 1,123,665 to 1,124,537 _05520 OLJFJH_05525: OLJFJH_05525 - D-aminoacyl-tRNA deacylase, at 1,124,534 to 1,124,971 _05525 OLJFJH_05530: OLJFJH_05530 - fatty acid biosynthesis protein FabY, at 1,125,031 to 1,125,969 _05530 Position (kb) 1124 1125Strain fitness (log2 ratio) -2 -1 0 1at 1123.536 kb on + strand, within OLJFJH_05515at 1123.536 kb on + strand, within OLJFJH_05515at 1123.598 kb on + strand, within OLJFJH_05515at 1123.598 kb on + strand, within OLJFJH_05515at 1123.599 kb on - strand, within OLJFJH_05515at 1123.599 kb on - strand, within OLJFJH_05515at 1123.599 kb on - strand, within OLJFJH_05515at 1123.599 kb on - strand, within OLJFJH_05515at 1123.600 kb on + strandat 1123.600 kb on + strandat 1123.665 kb on - strandat 1123.780 kb on - strand, within OLJFJH_05520at 1123.809 kb on - strand, within OLJFJH_05520at 1123.832 kb on + strand, within OLJFJH_05520at 1123.832 kb on + strand, within OLJFJH_05520at 1123.894 kb on + strand, within OLJFJH_05520at 1123.894 kb on + strand, within OLJFJH_05520at 1123.895 kb on - strand, within OLJFJH_05520at 1123.895 kb on - strand, within OLJFJH_05520at 1123.895 kb on - strand, within OLJFJH_05520at 1123.895 kb on - strand, within OLJFJH_05520at 1123.895 kb on - strand, within OLJFJH_05520at 1123.895 kb on - strand, within OLJFJH_05520at 1123.926 kb on + strand, within OLJFJH_05520at 1124.011 kb on - strand, within OLJFJH_05520at 1124.011 kb on - strand, within OLJFJH_05520at 1124.054 kb on + strand, within OLJFJH_05520at 1124.070 kb on + strand, within OLJFJH_05520at 1124.138 kb on + strand, within OLJFJH_05520at 1124.194 kb on + strand, within OLJFJH_05520at 1124.194 kb on + strand, within OLJFJH_05520at 1124.194 kb on + strand, within OLJFJH_05520at 1124.195 kb on - strand, within OLJFJH_05520at 1124.195 kb on - strand, within OLJFJH_05520at 1124.198 kb on + strand, within OLJFJH_05520at 1124.199 kb on - strand, within OLJFJH_05520at 1124.212 kb on + strand, within OLJFJH_05520at 1124.355 kb on + strand, within OLJFJH_05520at 1124.355 kb on + strand, within OLJFJH_05520at 1124.355 kb on + strand, within OLJFJH_05520at 1124.355 kb on + strand, within OLJFJH_05520at 1124.355 kb on + strand, within OLJFJH_05520at 1124.355 kb on + strand, within OLJFJH_05520at 1124.355 kb on + strand, within OLJFJH_05520at 1124.355 kb on + strand, within OLJFJH_05520at 1124.356 kb on - strand, within OLJFJH_05520at 1124.356 kb on - strand, within OLJFJH_05520at 1124.356 kb on - strand, within OLJFJH_05520at 1124.356 kb on - strand, within OLJFJH_05520at 1124.356 kb on - strand, within OLJFJH_05520at 1124.356 kb on - strand, within OLJFJH_05520at 1124.356 kb on - strand, within OLJFJH_05520at 1124.357 kb on + strand, within OLJFJH_05520at 1124.358 kb on - strand, within OLJFJH_05520at 1124.376 kb on + strand, within OLJFJH_05520at 1124.377 kb on - strand, within OLJFJH_05520at 1124.389 kb on - strand, within OLJFJH_05520at 1124.389 kb on - strand, within OLJFJH_05520at 1124.544 kb on + strandat 1124.547 kb on + strandat 1124.548 kb on - strandat 1124.548 kb on - strandat 1124.855 kb on + strand, within OLJFJH_05525at 1124.856 kb on - strand, within OLJFJH_05525at 1124.856 kb on - strand, within OLJFJH_05525at 1124.950 kb on + strandat 1124.998 kb on - strandat 1125.013 kb on + strandat 1125.013 kb on + strandat 1125.013 kb on + strandat 1125.014 kb on - strandat 1125.030 kb on + strandat 1125.030 kb on + strandat 1125.031 kb on - strandat 1125.031 kb on - strandat 1125.031 kb on - strandat 1125.031 kb on - strandat 1125.031 kb on - strandat 1125.031 kb on - strandat 1125.031 kb on - strandat 1125.031 kb on - strandat 1125.031 kb on - strandat 1125.034 kb on + strandat 1125.034 kb on + strandat 1125.035 kb on - strandat 1125.035 kb on - strandat 1125.035 kb on - strandat 1125.035 kb on - strandat 1125.076 kb on + strandat 1125.077 kb on - strandat 1125.114 kb on - strandat 1125.218 kb on + strand, within OLJFJH_05530at 1125.218 kb on + strand, within OLJFJH_05530at 1125.218 kb on + strand, within OLJFJH_05530at 1125.218 kb on + strand, within OLJFJH_05530at 1125.218 kb on + strand, within OLJFJH_05530at 1125.219 kb on - strand, within OLJFJH_05530at 1125.219 kb on - strand, within OLJFJH_05530at 1125.219 kb on - strand, within OLJFJH_05530at 1125.335 kb on + strand, within OLJFJH_05530at 1125.335 kb on + strand, within OLJFJH_05530at 1125.429 kb on + strand, within OLJFJH_05530at 1125.526 kb on + strand, within OLJFJH_05530at 1125.534 kb on + strand, within OLJFJH_05530at 1125.575 kb on - strand, within OLJFJH_05530at 1125.575 kb on - strand, within OLJFJH_05530at 1125.575 kb on - strand, within OLJFJH_05530at 1125.577 kb on - strand, within OLJFJH_05530at 1125.729 kb on + strand, within OLJFJH_05530at 1125.729 kb on + strand, within OLJFJH_05530at 1125.747 kb on + strand, within OLJFJH_05530at 1125.910 kb on + strandat 1125.910 kb on + strandat 1125.910 kb on + strandat 1125.910 kb on + strandat 1125.910 kb on + strandat 1125.910 kb on + strandat 1125.910 kb on + strandat 1125.910 kb on + strandat 1125.910 kb on + strandat 1125.911 kb on - strandat 1125.911 kb on - strandat 1125.911 kb on - strandat 1125.911 kb on - strandat 1125.911 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:17;Samp:23-7
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1,123,536 + OLJFJH_05515 0.79 -0.2
1,123,536 + OLJFJH_05515 0.79 -0.5
1,123,598 + OLJFJH_05515 0.90 -0.1
1,123,598 + OLJFJH_05515 0.90 -0.6
1,123,599 - OLJFJH_05515 0.90 +0.0
1,123,599 - OLJFJH_05515 0.90 -0.0
1,123,599 - OLJFJH_05515 0.90 +0.3
1,123,599 - OLJFJH_05515 0.90 -0.9
1,123,600 + +0.6
1,123,600 + +0.2
1,123,665 - -0.1
1,123,780 - OLJFJH_05520 0.13 +0.5
1,123,809 - OLJFJH_05520 0.16 -0.4
1,123,832 + OLJFJH_05520 0.19 +0.8
1,123,832 + OLJFJH_05520 0.19 +0.5
1,123,894 + OLJFJH_05520 0.26 +0.0
1,123,894 + OLJFJH_05520 0.26 -0.5
1,123,895 - OLJFJH_05520 0.26 +0.3
1,123,895 - OLJFJH_05520 0.26 +0.7
1,123,895 - OLJFJH_05520 0.26 +0.5
1,123,895 - OLJFJH_05520 0.26 +0.0
1,123,895 - OLJFJH_05520 0.26 +0.4
1,123,895 - OLJFJH_05520 0.26 -0.3
1,123,926 + OLJFJH_05520 0.30 +0.0
1,124,011 - OLJFJH_05520 0.40 +0.3
1,124,011 - OLJFJH_05520 0.40 -1.0
1,124,054 + OLJFJH_05520 0.45 +0.3
1,124,070 + OLJFJH_05520 0.46 +0.1
1,124,138 + OLJFJH_05520 0.54 -1.1
1,124,194 + OLJFJH_05520 0.61 -1.2
1,124,194 + OLJFJH_05520 0.61 +0.6
1,124,194 + OLJFJH_05520 0.61 -0.2
1,124,195 - OLJFJH_05520 0.61 +0.3
1,124,195 - OLJFJH_05520 0.61 -0.1
1,124,198 + OLJFJH_05520 0.61 +0.2
1,124,199 - OLJFJH_05520 0.61 +0.6
1,124,212 + OLJFJH_05520 0.63 +0.0
1,124,355 + OLJFJH_05520 0.79 +0.0
1,124,355 + OLJFJH_05520 0.79 -0.3
1,124,355 + OLJFJH_05520 0.79 -0.3
1,124,355 + OLJFJH_05520 0.79 -0.5
1,124,355 + OLJFJH_05520 0.79 -0.5
1,124,355 + OLJFJH_05520 0.79 -0.9
1,124,355 + OLJFJH_05520 0.79 +0.0
1,124,355 + OLJFJH_05520 0.79 +0.4
1,124,356 - OLJFJH_05520 0.79 +0.1
1,124,356 - OLJFJH_05520 0.79 +0.5
1,124,356 - OLJFJH_05520 0.79 -0.5
1,124,356 - OLJFJH_05520 0.79 +1.0
1,124,356 - OLJFJH_05520 0.79 -0.7
1,124,356 - OLJFJH_05520 0.79 +0.4
1,124,356 - OLJFJH_05520 0.79 -0.2
1,124,357 + OLJFJH_05520 0.79 +1.4
1,124,358 - OLJFJH_05520 0.79 -1.5
1,124,376 + OLJFJH_05520 0.81 -0.0
1,124,377 - OLJFJH_05520 0.82 +0.0
1,124,389 - OLJFJH_05520 0.83 +0.5
1,124,389 - OLJFJH_05520 0.83 +0.1
1,124,544 + -1.8
1,124,547 + -0.0
1,124,548 - -0.8
1,124,548 - +0.1
1,124,855 + OLJFJH_05525 0.73 -0.1
1,124,856 - OLJFJH_05525 0.74 -1.0
1,124,856 - OLJFJH_05525 0.74 -2.6
1,124,950 + +0.0
1,124,998 - -0.4
1,125,013 + +0.0
1,125,013 + +0.2
1,125,013 + -1.4
1,125,014 - +0.8
1,125,030 + +0.2
1,125,030 + -0.2
1,125,031 - -0.1
1,125,031 - +0.3
1,125,031 - -1.0
1,125,031 - +0.2
1,125,031 - -0.7
1,125,031 - +0.0
1,125,031 - +0.5
1,125,031 - -0.6
1,125,031 - +0.7
1,125,034 + -0.1
1,125,034 + -1.4
1,125,035 - -0.5
1,125,035 - -0.1
1,125,035 - -0.5
1,125,035 - -0.8
1,125,076 + +0.2
1,125,077 - +0.9
1,125,114 - +0.6
1,125,218 + OLJFJH_05530 0.20 -0.3
1,125,218 + OLJFJH_05530 0.20 +0.3
1,125,218 + OLJFJH_05530 0.20 -1.3
1,125,218 + OLJFJH_05530 0.20 +0.1
1,125,218 + OLJFJH_05530 0.20 +0.0
1,125,219 - OLJFJH_05530 0.20 +0.6
1,125,219 - OLJFJH_05530 0.20 -1.4
1,125,219 - OLJFJH_05530 0.20 +0.2
1,125,335 + OLJFJH_05530 0.32 +0.5
1,125,335 + OLJFJH_05530 0.32 -0.3
1,125,429 + OLJFJH_05530 0.42 -0.4
1,125,526 + OLJFJH_05530 0.53 -0.5
1,125,534 + OLJFJH_05530 0.54 +0.3
1,125,575 - OLJFJH_05530 0.58 -0.0
1,125,575 - OLJFJH_05530 0.58 -1.5
1,125,575 - OLJFJH_05530 0.58 -1.9
1,125,577 - OLJFJH_05530 0.58 -0.1
1,125,729 + OLJFJH_05530 0.74 -0.7
1,125,729 + OLJFJH_05530 0.74 -0.5
1,125,747 + OLJFJH_05530 0.76 +0.2
1,125,910 + -0.2
1,125,910 + +0.4
1,125,910 + -0.5
1,125,910 + +0.4
1,125,910 + -0.1
1,125,910 + -0.7
1,125,910 + +0.1
1,125,910 + -1.4
1,125,910 + +0.1
1,125,911 - +0.5
1,125,911 - -0.7
1,125,911 - +0.1
1,125,911 - +0.1
1,125,911 - -0.1

Or see this region's nucleotide sequence