Strain Fitness in Erwinia amylovora T8 around OLJFJH_04555

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:17;Samp:23-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_04550 and OLJFJH_04555 are separated by 378 nucleotidesOLJFJH_04555 and OLJFJH_04560 are separated by 83 nucleotides OLJFJH_04550: OLJFJH_04550 - hypothetical protein, at 885,146 to 887,836 _04550 OLJFJH_04555: OLJFJH_04555 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 888,215 to 889,057 _04555 OLJFJH_04560: OLJFJH_04560 - ribonuclease Z, at 889,141 to 890,055 _04560 Position (kb) 888 889 890Strain fitness (log2 ratio) -3 -2 -1 0 1at 887.269 kb on - strand, within OLJFJH_04550at 887.306 kb on + strand, within OLJFJH_04550at 887.728 kb on + strandat 887.795 kb on + strandat 887.934 kb on - strandat 887.934 kb on - strandat 887.935 kb on + strandat 887.936 kb on - strandat 888.025 kb on + strandat 888.039 kb on + strandat 888.073 kb on + strandat 888.074 kb on - strandat 888.074 kb on - strandat 888.075 kb on + strandat 888.075 kb on + strandat 888.076 kb on - strandat 888.154 kb on + strandat 888.155 kb on - strandat 888.155 kb on - strandat 888.155 kb on - strandat 888.155 kb on - strandat 888.320 kb on + strand, within OLJFJH_04555at 888.320 kb on + strand, within OLJFJH_04555at 888.415 kb on + strand, within OLJFJH_04555at 888.434 kb on - strand, within OLJFJH_04555at 888.434 kb on - strand, within OLJFJH_04555at 888.434 kb on - strand, within OLJFJH_04555at 888.455 kb on + strand, within OLJFJH_04555at 888.555 kb on + strand, within OLJFJH_04555at 888.555 kb on + strand, within OLJFJH_04555at 888.556 kb on - strand, within OLJFJH_04555at 888.693 kb on + strand, within OLJFJH_04555at 888.713 kb on + strand, within OLJFJH_04555at 888.714 kb on - strand, within OLJFJH_04555at 888.714 kb on - strand, within OLJFJH_04555at 888.832 kb on + strand, within OLJFJH_04555at 888.833 kb on - strand, within OLJFJH_04555at 888.833 kb on - strand, within OLJFJH_04555at 888.944 kb on - strand, within OLJFJH_04555at 888.997 kb on + strandat 889.220 kb on + strandat 889.221 kb on - strandat 889.221 kb on - strandat 889.532 kb on + strand, within OLJFJH_04560at 889.538 kb on + strand, within OLJFJH_04560at 889.539 kb on - strand, within OLJFJH_04560at 889.539 kb on - strand, within OLJFJH_04560at 889.681 kb on + strand, within OLJFJH_04560at 889.682 kb on - strand, within OLJFJH_04560at 889.768 kb on + strand, within OLJFJH_04560at 889.784 kb on + strand, within OLJFJH_04560at 889.851 kb on + strand, within OLJFJH_04560at 889.852 kb on - strand, within OLJFJH_04560

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:17;Samp:23-7
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887,269 - OLJFJH_04550 0.79 -0.4
887,306 + OLJFJH_04550 0.80 -1.2
887,728 + -0.3
887,795 + -0.1
887,934 - -1.5
887,934 - -0.5
887,935 + +0.1
887,936 - +0.1
888,025 + +0.3
888,039 + -0.0
888,073 + +1.0
888,074 - -0.4
888,074 - +0.3
888,075 + +0.6
888,075 + -0.2
888,076 - -1.1
888,154 + -0.5
888,155 - +0.2
888,155 - +0.3
888,155 - +0.4
888,155 - -0.4
888,320 + OLJFJH_04555 0.12 +0.1
888,320 + OLJFJH_04555 0.12 +0.1
888,415 + OLJFJH_04555 0.24 -0.4
888,434 - OLJFJH_04555 0.26 -0.3
888,434 - OLJFJH_04555 0.26 -0.9
888,434 - OLJFJH_04555 0.26 -1.2
888,455 + OLJFJH_04555 0.28 -0.5
888,555 + OLJFJH_04555 0.40 -1.0
888,555 + OLJFJH_04555 0.40 -0.3
888,556 - OLJFJH_04555 0.40 -0.2
888,693 + OLJFJH_04555 0.57 -0.5
888,713 + OLJFJH_04555 0.59 -0.3
888,714 - OLJFJH_04555 0.59 -1.4
888,714 - OLJFJH_04555 0.59 +0.1
888,832 + OLJFJH_04555 0.73 -3.6
888,833 - OLJFJH_04555 0.73 -0.5
888,833 - OLJFJH_04555 0.73 -1.1
888,944 - OLJFJH_04555 0.86 +0.2
888,997 + -1.3
889,220 + +0.1
889,221 - +0.5
889,221 - -0.3
889,532 + OLJFJH_04560 0.43 -0.1
889,538 + OLJFJH_04560 0.43 +0.4
889,539 - OLJFJH_04560 0.43 -0.8
889,539 - OLJFJH_04560 0.43 +0.7
889,681 + OLJFJH_04560 0.59 -0.7
889,682 - OLJFJH_04560 0.59 -0.0
889,768 + OLJFJH_04560 0.69 -0.2
889,784 + OLJFJH_04560 0.70 -0.6
889,851 + OLJFJH_04560 0.78 +0.2
889,852 - OLJFJH_04560 0.78 +0.5

Or see this region's nucleotide sequence