Strain Fitness in Erwinia amylovora T8 around OLJFJH_01710

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:17;Samp:23-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01700 and OLJFJH_01705 are separated by 5 nucleotidesOLJFJH_01705 and OLJFJH_01710 are separated by 316 nucleotidesOLJFJH_01710 and OLJFJH_01715 are separated by 3 nucleotides OLJFJH_01700: OLJFJH_01700 - hypothetical protein, at 290,494 to 290,700 _01700 OLJFJH_01705: OLJFJH_01705 - hypothetical protein, at 290,706 to 291,089 _01705 OLJFJH_01710: OLJFJH_01710 - hypothetical protein, at 291,406 to 291,885 _01710 OLJFJH_01715: OLJFJH_01715 - RHS domain-containing protein, at 291,889 to 293,946 _01715 Position (kb) 291 292Strain fitness (log2 ratio) -2 -1 0 1at 290.512 kb on + strandat 291.065 kb on + strandat 291.746 kb on + strand, within OLJFJH_01710at 291.810 kb on + strand, within OLJFJH_01710at 291.938 kb on + strandat 292.051 kb on + strandat 292.282 kb on - strand, within OLJFJH_01715at 292.282 kb on - strand, within OLJFJH_01715at 292.299 kb on + strand, within OLJFJH_01715at 292.300 kb on - strand, within OLJFJH_01715at 292.300 kb on - strand, within OLJFJH_01715at 292.358 kb on + strand, within OLJFJH_01715at 292.359 kb on - strand, within OLJFJH_01715at 292.364 kb on + strand, within OLJFJH_01715at 292.364 kb on + strand, within OLJFJH_01715at 292.369 kb on - strand, within OLJFJH_01715at 292.369 kb on - strand, within OLJFJH_01715

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:17;Samp:23-7
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290,512 + -1.8
291,065 + -0.4
291,746 + OLJFJH_01710 0.71 -1.0
291,810 + OLJFJH_01710 0.84 -0.7
291,938 + -0.2
292,051 + -0.5
292,282 - OLJFJH_01715 0.19 +0.0
292,282 - OLJFJH_01715 0.19 -0.6
292,299 + OLJFJH_01715 0.20 -0.4
292,300 - OLJFJH_01715 0.20 -0.4
292,300 - OLJFJH_01715 0.20 +0.4
292,358 + OLJFJH_01715 0.23 -0.1
292,359 - OLJFJH_01715 0.23 +0.9
292,364 + OLJFJH_01715 0.23 +0.3
292,364 + OLJFJH_01715 0.23 +0.3
292,369 - OLJFJH_01715 0.23 -0.1
292,369 - OLJFJH_01715 0.23 +0.0

Or see this region's nucleotide sequence