Strain Fitness in Erwinia amylovora T8 around OLJFJH_08035

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_08030 and OLJFJH_08035 are separated by 128 nucleotidesOLJFJH_08035 and OLJFJH_08040 are separated by 4 nucleotidesOLJFJH_08040 and OLJFJH_08045 are separated by 358 nucleotides OLJFJH_08030: OLJFJH_08030 - LysR family transcriptional regulator AmpR, at 1,659,567 to 1,660,493 _08030 OLJFJH_08035: OLJFJH_08035 - class C beta-lactamase, at 1,660,622 to 1,661,839 _08035 OLJFJH_08040: OLJFJH_08040 - Ivy family C-type lysozyme inhibitor, at 1,661,844 to 1,662,290 _08040 OLJFJH_08045: OLJFJH_08045 - VirK protein, at 1,662,649 to 1,663,110 _08045 Position (kb) 1660 1661 1662Strain fitness (log2 ratio) -2 -1 0 1 2at 1659.944 kb on + strand, within OLJFJH_08030at 1659.945 kb on - strand, within OLJFJH_08030at 1659.945 kb on - strand, within OLJFJH_08030at 1659.945 kb on - strand, within OLJFJH_08030at 1659.945 kb on - strand, within OLJFJH_08030at 1660.070 kb on - strand, within OLJFJH_08030at 1660.331 kb on + strand, within OLJFJH_08030at 1660.332 kb on - strand, within OLJFJH_08030at 1660.481 kb on + strandat 1660.481 kb on + strandat 1660.481 kb on + strandat 1660.481 kb on + strandat 1660.481 kb on + strandat 1660.481 kb on + strandat 1660.481 kb on + strandat 1660.481 kb on + strandat 1660.481 kb on + strandat 1660.481 kb on + strandat 1660.481 kb on + strandat 1660.481 kb on + strandat 1660.481 kb on + strandat 1660.482 kb on - strandat 1660.482 kb on - strandat 1660.482 kb on - strandat 1660.482 kb on - strandat 1660.482 kb on - strandat 1660.482 kb on - strandat 1660.482 kb on - strandat 1660.482 kb on - strandat 1660.482 kb on - strandat 1660.483 kb on + strandat 1660.483 kb on + strandat 1660.483 kb on + strandat 1660.643 kb on - strandat 1660.797 kb on - strand, within OLJFJH_08035at 1660.797 kb on - strand, within OLJFJH_08035at 1660.867 kb on + strand, within OLJFJH_08035at 1660.867 kb on + strand, within OLJFJH_08035at 1660.867 kb on + strand, within OLJFJH_08035at 1660.954 kb on + strand, within OLJFJH_08035at 1660.985 kb on - strand, within OLJFJH_08035at 1661.008 kb on - strand, within OLJFJH_08035at 1661.018 kb on - strand, within OLJFJH_08035at 1661.030 kb on + strand, within OLJFJH_08035at 1661.030 kb on + strand, within OLJFJH_08035at 1661.097 kb on - strand, within OLJFJH_08035at 1661.140 kb on + strand, within OLJFJH_08035at 1661.141 kb on - strand, within OLJFJH_08035at 1661.141 kb on - strand, within OLJFJH_08035at 1661.141 kb on - strand, within OLJFJH_08035at 1661.141 kb on - strand, within OLJFJH_08035at 1661.144 kb on + strand, within OLJFJH_08035at 1661.144 kb on + strand, within OLJFJH_08035at 1661.144 kb on + strand, within OLJFJH_08035at 1661.145 kb on - strand, within OLJFJH_08035at 1661.214 kb on - strand, within OLJFJH_08035at 1661.214 kb on - strand, within OLJFJH_08035at 1661.222 kb on - strand, within OLJFJH_08035at 1661.222 kb on - strand, within OLJFJH_08035at 1661.303 kb on + strand, within OLJFJH_08035at 1661.393 kb on + strand, within OLJFJH_08035at 1661.393 kb on + strand, within OLJFJH_08035at 1661.393 kb on + strand, within OLJFJH_08035at 1661.393 kb on + strand, within OLJFJH_08035at 1661.394 kb on - strand, within OLJFJH_08035at 1661.394 kb on - strand, within OLJFJH_08035at 1661.394 kb on - strand, within OLJFJH_08035at 1661.395 kb on + strand, within OLJFJH_08035at 1661.395 kb on + strand, within OLJFJH_08035at 1661.396 kb on - strand, within OLJFJH_08035at 1661.396 kb on - strand, within OLJFJH_08035at 1661.396 kb on - strand, within OLJFJH_08035at 1661.396 kb on - strand, within OLJFJH_08035at 1661.425 kb on - strand, within OLJFJH_08035at 1661.445 kb on + strand, within OLJFJH_08035at 1661.445 kb on + strand, within OLJFJH_08035at 1661.445 kb on + strand, within OLJFJH_08035at 1661.498 kb on + strand, within OLJFJH_08035at 1661.498 kb on + strand, within OLJFJH_08035at 1661.498 kb on + strand, within OLJFJH_08035at 1661.499 kb on - strand, within OLJFJH_08035at 1661.499 kb on - strand, within OLJFJH_08035at 1661.499 kb on - strand, within OLJFJH_08035at 1661.499 kb on - strand, within OLJFJH_08035at 1661.644 kb on + strand, within OLJFJH_08035at 1661.644 kb on + strand, within OLJFJH_08035at 1661.645 kb on - strand, within OLJFJH_08035at 1661.645 kb on - strand, within OLJFJH_08035at 1661.645 kb on - strand, within OLJFJH_08035at 1661.657 kb on - strand, within OLJFJH_08035at 1661.657 kb on - strand, within OLJFJH_08035at 1661.675 kb on + strand, within OLJFJH_08035at 1661.676 kb on - strand, within OLJFJH_08035at 1661.686 kb on + strand, within OLJFJH_08035at 1661.733 kb on - strandat 1662.022 kb on + strand, within OLJFJH_08040at 1662.022 kb on + strand, within OLJFJH_08040at 1662.098 kb on + strand, within OLJFJH_08040at 1662.192 kb on - strand, within OLJFJH_08040at 1662.275 kb on + strandat 1662.275 kb on + strandat 1662.275 kb on + strandat 1662.275 kb on + strandat 1662.276 kb on - strandat 1662.276 kb on - strandat 1662.276 kb on - strandat 1662.335 kb on + strandat 1662.336 kb on - strandat 1662.336 kb on - strandat 1662.398 kb on - strandat 1662.590 kb on - strandat 1662.623 kb on - strandat 1662.641 kb on + strandat 1662.734 kb on - strand, within OLJFJH_08045at 1662.834 kb on + strand, within OLJFJH_08045

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-8
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1,659,944 + OLJFJH_08030 0.41 -1.8
1,659,945 - OLJFJH_08030 0.41 +0.4
1,659,945 - OLJFJH_08030 0.41 -0.8
1,659,945 - OLJFJH_08030 0.41 +1.9
1,659,945 - OLJFJH_08030 0.41 -1.2
1,660,070 - OLJFJH_08030 0.54 +1.5
1,660,331 + OLJFJH_08030 0.82 -0.0
1,660,332 - OLJFJH_08030 0.83 -0.6
1,660,481 + -0.2
1,660,481 + +0.2
1,660,481 + -0.3
1,660,481 + +0.9
1,660,481 + -0.0
1,660,481 + +0.5
1,660,481 + -0.8
1,660,481 + -2.5
1,660,481 + +2.0
1,660,481 + +0.4
1,660,481 + +0.3
1,660,481 + +0.1
1,660,481 + -1.3
1,660,482 - +0.5
1,660,482 - +0.1
1,660,482 - +0.1
1,660,482 - -0.2
1,660,482 - +0.3
1,660,482 - -0.0
1,660,482 - +0.4
1,660,482 - -2.1
1,660,482 - +0.3
1,660,483 + +0.3
1,660,483 + +0.2
1,660,483 + +1.0
1,660,643 - -0.5
1,660,797 - OLJFJH_08035 0.14 -1.5
1,660,797 - OLJFJH_08035 0.14 +0.4
1,660,867 + OLJFJH_08035 0.20 +0.1
1,660,867 + OLJFJH_08035 0.20 -1.1
1,660,867 + OLJFJH_08035 0.20 -0.6
1,660,954 + OLJFJH_08035 0.27 -0.9
1,660,985 - OLJFJH_08035 0.30 +0.5
1,661,008 - OLJFJH_08035 0.32 -1.3
1,661,018 - OLJFJH_08035 0.33 -0.4
1,661,030 + OLJFJH_08035 0.33 -1.4
1,661,030 + OLJFJH_08035 0.33 -0.4
1,661,097 - OLJFJH_08035 0.39 +0.6
1,661,140 + OLJFJH_08035 0.43 -0.6
1,661,141 - OLJFJH_08035 0.43 -0.0
1,661,141 - OLJFJH_08035 0.43 +1.2
1,661,141 - OLJFJH_08035 0.43 -0.9
1,661,141 - OLJFJH_08035 0.43 -0.3
1,661,144 + OLJFJH_08035 0.43 -0.3
1,661,144 + OLJFJH_08035 0.43 -1.2
1,661,144 + OLJFJH_08035 0.43 +0.4
1,661,145 - OLJFJH_08035 0.43 -0.2
1,661,214 - OLJFJH_08035 0.49 -0.2
1,661,214 - OLJFJH_08035 0.49 -0.8
1,661,222 - OLJFJH_08035 0.49 -0.4
1,661,222 - OLJFJH_08035 0.49 -0.6
1,661,303 + OLJFJH_08035 0.56 -0.5
1,661,393 + OLJFJH_08035 0.63 -0.3
1,661,393 + OLJFJH_08035 0.63 +0.3
1,661,393 + OLJFJH_08035 0.63 -0.8
1,661,393 + OLJFJH_08035 0.63 +0.1
1,661,394 - OLJFJH_08035 0.63 +0.1
1,661,394 - OLJFJH_08035 0.63 -0.8
1,661,394 - OLJFJH_08035 0.63 +1.3
1,661,395 + OLJFJH_08035 0.63 -1.0
1,661,395 + OLJFJH_08035 0.63 -0.1
1,661,396 - OLJFJH_08035 0.64 -1.6
1,661,396 - OLJFJH_08035 0.64 -0.4
1,661,396 - OLJFJH_08035 0.64 +0.3
1,661,396 - OLJFJH_08035 0.64 +0.3
1,661,425 - OLJFJH_08035 0.66 -0.7
1,661,445 + OLJFJH_08035 0.68 -1.8
1,661,445 + OLJFJH_08035 0.68 -0.0
1,661,445 + OLJFJH_08035 0.68 -0.5
1,661,498 + OLJFJH_08035 0.72 +0.6
1,661,498 + OLJFJH_08035 0.72 -1.3
1,661,498 + OLJFJH_08035 0.72 +0.0
1,661,499 - OLJFJH_08035 0.72 -0.3
1,661,499 - OLJFJH_08035 0.72 -0.3
1,661,499 - OLJFJH_08035 0.72 +0.8
1,661,499 - OLJFJH_08035 0.72 -0.4
1,661,644 + OLJFJH_08035 0.84 +0.0
1,661,644 + OLJFJH_08035 0.84 +0.3
1,661,645 - OLJFJH_08035 0.84 -1.4
1,661,645 - OLJFJH_08035 0.84 +1.9
1,661,645 - OLJFJH_08035 0.84 -0.2
1,661,657 - OLJFJH_08035 0.85 +0.8
1,661,657 - OLJFJH_08035 0.85 -0.4
1,661,675 + OLJFJH_08035 0.86 +1.0
1,661,676 - OLJFJH_08035 0.87 -1.1
1,661,686 + OLJFJH_08035 0.87 +0.8
1,661,733 - +0.1
1,662,022 + OLJFJH_08040 0.40 -0.4
1,662,022 + OLJFJH_08040 0.40 -0.2
1,662,098 + OLJFJH_08040 0.57 +0.3
1,662,192 - OLJFJH_08040 0.78 -0.2
1,662,275 + -0.5
1,662,275 + +0.3
1,662,275 + -1.1
1,662,275 + +0.1
1,662,276 - -0.6
1,662,276 - -0.6
1,662,276 - +0.2
1,662,335 + +0.9
1,662,336 - +0.9
1,662,336 - +0.0
1,662,398 - +0.5
1,662,590 - +1.2
1,662,623 - -0.1
1,662,641 + +0.1
1,662,734 - OLJFJH_08045 0.18 -0.4
1,662,834 + OLJFJH_08045 0.40 +0.4

Or see this region's nucleotide sequence