Strain Fitness in Erwinia amylovora T8 around OLJFJH_04035

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_04030 and OLJFJH_04035 are separated by 86 nucleotidesOLJFJH_04035 and OLJFJH_04040 are separated by 58 nucleotidesOLJFJH_04040 and OLJFJH_04045 are separated by 275 nucleotides OLJFJH_04030: OLJFJH_04030 - bifunctional succinylornithine transaminase/acetylornithine transaminase, at 767,149 to 768,366 _04030 OLJFJH_04035: OLJFJH_04035 - aminodeoxychorismate synthase component II, at 768,453 to 769,031 _04035 OLJFJH_04040: OLJFJH_04040 - peptidylprolyl isomerase A, at 769,090 to 769,662 _04040 OLJFJH_04045: OLJFJH_04045 - MFS transporter TsgA, at 769,938 to 771,122 _04045 Position (kb) 768 769 770Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 767.553 kb on + strand, within OLJFJH_04030at 767.619 kb on + strand, within OLJFJH_04030at 767.619 kb on + strand, within OLJFJH_04030at 767.619 kb on + strand, within OLJFJH_04030at 767.619 kb on + strand, within OLJFJH_04030at 767.620 kb on - strand, within OLJFJH_04030at 767.620 kb on - strand, within OLJFJH_04030at 767.620 kb on - strand, within OLJFJH_04030at 767.645 kb on + strand, within OLJFJH_04030at 767.684 kb on - strand, within OLJFJH_04030at 767.808 kb on + strand, within OLJFJH_04030at 767.808 kb on + strand, within OLJFJH_04030at 767.808 kb on + strand, within OLJFJH_04030at 767.808 kb on + strand, within OLJFJH_04030at 767.809 kb on - strand, within OLJFJH_04030at 767.809 kb on - strand, within OLJFJH_04030at 767.809 kb on - strand, within OLJFJH_04030at 767.898 kb on - strand, within OLJFJH_04030at 767.976 kb on + strand, within OLJFJH_04030at 767.976 kb on + strand, within OLJFJH_04030at 767.976 kb on + strand, within OLJFJH_04030at 767.977 kb on - strand, within OLJFJH_04030at 768.175 kb on + strand, within OLJFJH_04030at 768.176 kb on - strand, within OLJFJH_04030at 768.236 kb on + strand, within OLJFJH_04030at 768.236 kb on + strand, within OLJFJH_04030at 768.237 kb on - strand, within OLJFJH_04030at 768.237 kb on - strand, within OLJFJH_04030at 768.447 kb on + strandat 768.448 kb on - strandat 768.560 kb on + strand, within OLJFJH_04035at 768.561 kb on - strand, within OLJFJH_04035at 768.691 kb on - strand, within OLJFJH_04035at 768.691 kb on - strand, within OLJFJH_04035at 768.691 kb on - strand, within OLJFJH_04035at 768.754 kb on - strand, within OLJFJH_04035at 768.754 kb on - strand, within OLJFJH_04035at 768.754 kb on - strand, within OLJFJH_04035at 768.979 kb on + strandat 768.985 kb on + strandat 768.986 kb on - strandat 769.009 kb on + strandat 769.010 kb on - strandat 769.010 kb on - strandat 769.087 kb on + strandat 769.087 kb on + strandat 769.088 kb on - strandat 769.091 kb on + strandat 769.092 kb on - strandat 769.117 kb on - strandat 769.205 kb on - strand, within OLJFJH_04040at 769.212 kb on + strand, within OLJFJH_04040at 769.279 kb on - strand, within OLJFJH_04040at 769.293 kb on + strand, within OLJFJH_04040at 769.293 kb on + strand, within OLJFJH_04040at 769.470 kb on - strand, within OLJFJH_04040at 769.488 kb on - strand, within OLJFJH_04040at 769.527 kb on + strand, within OLJFJH_04040at 769.530 kb on + strand, within OLJFJH_04040at 769.530 kb on + strand, within OLJFJH_04040at 769.531 kb on - strand, within OLJFJH_04040at 769.650 kb on + strandat 769.706 kb on + strandat 769.712 kb on - strandat 769.743 kb on - strandat 769.752 kb on + strandat 769.752 kb on + strandat 769.761 kb on + strandat 769.762 kb on - strandat 769.937 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-8
remove
767,553 + OLJFJH_04030 0.33 -3.5
767,619 + OLJFJH_04030 0.39 -1.7
767,619 + OLJFJH_04030 0.39 -1.6
767,619 + OLJFJH_04030 0.39 -0.8
767,619 + OLJFJH_04030 0.39 -0.5
767,620 - OLJFJH_04030 0.39 -0.5
767,620 - OLJFJH_04030 0.39 -0.2
767,620 - OLJFJH_04030 0.39 -0.1
767,645 + OLJFJH_04030 0.41 +0.2
767,684 - OLJFJH_04030 0.44 -1.5
767,808 + OLJFJH_04030 0.54 -0.6
767,808 + OLJFJH_04030 0.54 -0.2
767,808 + OLJFJH_04030 0.54 +3.0
767,808 + OLJFJH_04030 0.54 -0.3
767,809 - OLJFJH_04030 0.54 -0.5
767,809 - OLJFJH_04030 0.54 -0.2
767,809 - OLJFJH_04030 0.54 +0.3
767,898 - OLJFJH_04030 0.61 -0.3
767,976 + OLJFJH_04030 0.68 -1.5
767,976 + OLJFJH_04030 0.68 -0.4
767,976 + OLJFJH_04030 0.68 -1.3
767,977 - OLJFJH_04030 0.68 -1.1
768,175 + OLJFJH_04030 0.84 -3.0
768,176 - OLJFJH_04030 0.84 +0.1
768,236 + OLJFJH_04030 0.89 +0.0
768,236 + OLJFJH_04030 0.89 -1.3
768,237 - OLJFJH_04030 0.89 +0.1
768,237 - OLJFJH_04030 0.89 -0.4
768,447 + -0.2
768,448 - -0.5
768,560 + OLJFJH_04035 0.18 -0.1
768,561 - OLJFJH_04035 0.19 -1.1
768,691 - OLJFJH_04035 0.41 -0.1
768,691 - OLJFJH_04035 0.41 -1.6
768,691 - OLJFJH_04035 0.41 -0.4
768,754 - OLJFJH_04035 0.52 -2.0
768,754 - OLJFJH_04035 0.52 -0.8
768,754 - OLJFJH_04035 0.52 +1.5
768,979 + -0.4
768,985 + -0.1
768,986 - -0.8
769,009 + -0.7
769,010 - +0.2
769,010 - -0.6
769,087 + +0.4
769,087 + +0.8
769,088 - -0.1
769,091 + +0.6
769,092 - +0.4
769,117 - +0.4
769,205 - OLJFJH_04040 0.20 -0.5
769,212 + OLJFJH_04040 0.21 +1.0
769,279 - OLJFJH_04040 0.33 +1.6
769,293 + OLJFJH_04040 0.35 -1.6
769,293 + OLJFJH_04040 0.35 -0.5
769,470 - OLJFJH_04040 0.66 +0.6
769,488 - OLJFJH_04040 0.69 -0.2
769,527 + OLJFJH_04040 0.76 -0.7
769,530 + OLJFJH_04040 0.77 +0.8
769,530 + OLJFJH_04040 0.77 -3.1
769,531 - OLJFJH_04040 0.77 +0.0
769,650 + +0.6
769,706 + +1.2
769,712 - +0.7
769,743 - +0.2
769,752 + -0.0
769,752 + -1.3
769,761 + -0.3
769,762 - -0.1
769,937 + -1.4

Or see this region's nucleotide sequence