Strain Fitness in Erwinia amylovora T8 around OLJFJH_02625

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_02620 and OLJFJH_02625 are separated by 204 nucleotidesOLJFJH_02625 and OLJFJH_02630 are separated by 37 nucleotidesOLJFJH_02630 and OLJFJH_02635 are separated by 110 nucleotidesOLJFJH_02635 and OLJFJH_02640 are separated by 180 nucleotides OLJFJH_02620: OLJFJH_02620 - C4-dicarboxylate ABC transporter, at 474,449 to 475,750 _02620 OLJFJH_02625: OLJFJH_02625 - protein-disulfide reductase DsbD, at 475,955 to 477,670 _02625 OLJFJH_02630: OLJFJH_02630 - transcriptional regulator, at 477,708 to 478,283 _02630 OLJFJH_02635: OLJFJH_02635 - tRNA-Phe, at 478,394 to 478,469 _02635 OLJFJH_02640: OLJFJH_02640 - site-specific integrase, at 478,650 to 479,663 _02640 Position (kb) 475 476 477 478Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 475.009 kb on + strand, within OLJFJH_02620at 475.010 kb on - strand, within OLJFJH_02620at 475.159 kb on - strand, within OLJFJH_02620at 475.222 kb on + strand, within OLJFJH_02620at 475.223 kb on - strand, within OLJFJH_02620at 475.239 kb on + strand, within OLJFJH_02620at 475.239 kb on + strand, within OLJFJH_02620at 475.239 kb on + strand, within OLJFJH_02620at 475.243 kb on + strand, within OLJFJH_02620at 475.243 kb on + strand, within OLJFJH_02620at 475.244 kb on - strand, within OLJFJH_02620at 475.244 kb on - strand, within OLJFJH_02620at 475.273 kb on + strand, within OLJFJH_02620at 475.372 kb on + strand, within OLJFJH_02620at 475.373 kb on - strand, within OLJFJH_02620at 475.373 kb on - strand, within OLJFJH_02620at 475.390 kb on + strand, within OLJFJH_02620at 475.748 kb on + strandat 475.749 kb on - strandat 475.869 kb on + strandat 475.869 kb on + strandat 475.869 kb on + strandat 475.869 kb on + strandat 475.870 kb on - strandat 475.870 kb on - strandat 475.872 kb on + strandat 475.943 kb on + strandat 475.944 kb on - strandat 475.947 kb on + strandat 475.947 kb on + strandat 475.959 kb on + strandat 476.128 kb on - strand, within OLJFJH_02625at 476.141 kb on + strand, within OLJFJH_02625at 476.142 kb on - strand, within OLJFJH_02625at 476.142 kb on - strand, within OLJFJH_02625at 476.142 kb on - strand, within OLJFJH_02625at 476.509 kb on + strand, within OLJFJH_02625at 476.509 kb on + strand, within OLJFJH_02625at 476.609 kb on + strand, within OLJFJH_02625at 476.609 kb on + strand, within OLJFJH_02625at 476.609 kb on + strand, within OLJFJH_02625at 476.609 kb on + strand, within OLJFJH_02625at 476.609 kb on + strand, within OLJFJH_02625at 476.609 kb on + strand, within OLJFJH_02625at 476.609 kb on + strand, within OLJFJH_02625at 476.610 kb on - strand, within OLJFJH_02625at 476.610 kb on - strand, within OLJFJH_02625at 476.610 kb on - strand, within OLJFJH_02625at 476.610 kb on - strand, within OLJFJH_02625at 476.610 kb on - strand, within OLJFJH_02625at 476.610 kb on - strand, within OLJFJH_02625at 476.610 kb on - strand, within OLJFJH_02625at 476.613 kb on + strand, within OLJFJH_02625at 476.614 kb on - strand, within OLJFJH_02625at 476.633 kb on + strand, within OLJFJH_02625at 476.633 kb on + strand, within OLJFJH_02625at 476.633 kb on + strand, within OLJFJH_02625at 476.635 kb on + strand, within OLJFJH_02625at 476.689 kb on - strand, within OLJFJH_02625at 476.900 kb on - strand, within OLJFJH_02625at 476.915 kb on + strand, within OLJFJH_02625at 476.916 kb on - strand, within OLJFJH_02625at 476.916 kb on - strand, within OLJFJH_02625at 476.916 kb on - strand, within OLJFJH_02625at 476.916 kb on - strand, within OLJFJH_02625at 476.960 kb on + strand, within OLJFJH_02625at 476.961 kb on - strand, within OLJFJH_02625at 476.961 kb on - strand, within OLJFJH_02625at 476.961 kb on - strand, within OLJFJH_02625at 476.961 kb on - strand, within OLJFJH_02625at 477.055 kb on - strand, within OLJFJH_02625at 477.094 kb on - strand, within OLJFJH_02625at 477.178 kb on + strand, within OLJFJH_02625at 477.178 kb on + strand, within OLJFJH_02625at 477.382 kb on + strand, within OLJFJH_02625at 477.399 kb on - strand, within OLJFJH_02625at 477.433 kb on + strand, within OLJFJH_02625at 477.433 kb on + strand, within OLJFJH_02625at 477.434 kb on - strand, within OLJFJH_02625at 477.434 kb on - strand, within OLJFJH_02625at 477.434 kb on - strand, within OLJFJH_02625at 477.434 kb on - strand, within OLJFJH_02625at 477.438 kb on - strand, within OLJFJH_02625at 477.459 kb on + strand, within OLJFJH_02625at 477.479 kb on - strand, within OLJFJH_02625at 477.490 kb on - strand, within OLJFJH_02625at 477.501 kb on + strandat 477.501 kb on + strandat 477.502 kb on - strandat 477.502 kb on - strandat 477.508 kb on + strandat 477.509 kb on - strandat 477.509 kb on - strandat 477.512 kb on - strandat 477.536 kb on - strandat 477.668 kb on + strandat 477.668 kb on + strandat 477.673 kb on - strandat 477.685 kb on - strandat 477.804 kb on + strand, within OLJFJH_02630at 477.806 kb on + strand, within OLJFJH_02630at 477.806 kb on + strand, within OLJFJH_02630at 477.807 kb on - strand, within OLJFJH_02630at 477.807 kb on - strand, within OLJFJH_02630at 477.807 kb on - strand, within OLJFJH_02630at 477.807 kb on - strand, within OLJFJH_02630at 478.026 kb on + strand, within OLJFJH_02630at 478.026 kb on + strand, within OLJFJH_02630at 478.027 kb on - strand, within OLJFJH_02630at 478.236 kb on + strandat 478.238 kb on + strandat 478.238 kb on + strandat 478.239 kb on - strandat 478.239 kb on - strandat 478.240 kb on + strandat 478.241 kb on - strandat 478.241 kb on - strandat 478.241 kb on - strandat 478.241 kb on - strandat 478.241 kb on - strandat 478.276 kb on + strandat 478.306 kb on - strandat 478.381 kb on - strandat 478.470 kb on + strandat 478.470 kb on + strandat 478.470 kb on + strandat 478.470 kb on + strandat 478.470 kb on + strandat 478.471 kb on - strandat 478.471 kb on - strandat 478.471 kb on - strandat 478.471 kb on - strandat 478.621 kb on - strandat 478.631 kb on - strandat 478.645 kb on + strandat 478.669 kb on - strandat 478.669 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-8
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475,009 + OLJFJH_02620 0.43 +0.4
475,010 - OLJFJH_02620 0.43 +0.3
475,159 - OLJFJH_02620 0.55 -0.5
475,222 + OLJFJH_02620 0.59 -0.4
475,223 - OLJFJH_02620 0.59 -1.5
475,239 + OLJFJH_02620 0.61 -1.1
475,239 + OLJFJH_02620 0.61 +0.8
475,239 + OLJFJH_02620 0.61 -0.5
475,243 + OLJFJH_02620 0.61 -1.2
475,243 + OLJFJH_02620 0.61 -0.8
475,244 - OLJFJH_02620 0.61 +0.7
475,244 - OLJFJH_02620 0.61 -1.0
475,273 + OLJFJH_02620 0.63 -0.0
475,372 + OLJFJH_02620 0.71 +0.8
475,373 - OLJFJH_02620 0.71 -0.5
475,373 - OLJFJH_02620 0.71 +0.2
475,390 + OLJFJH_02620 0.72 -0.1
475,748 + +1.5
475,749 - +0.4
475,869 + -1.0
475,869 + -0.3
475,869 + -0.4
475,869 + -1.1
475,870 - +0.1
475,870 - -1.3
475,872 + +0.2
475,943 + +0.6
475,944 - +0.4
475,947 + -0.4
475,947 + -1.5
475,959 + +0.5
476,128 - OLJFJH_02625 0.10 -2.2
476,141 + OLJFJH_02625 0.11 -0.0
476,142 - OLJFJH_02625 0.11 +0.5
476,142 - OLJFJH_02625 0.11 +0.4
476,142 - OLJFJH_02625 0.11 +0.1
476,509 + OLJFJH_02625 0.32 -0.2
476,509 + OLJFJH_02625 0.32 -0.3
476,609 + OLJFJH_02625 0.38 -1.6
476,609 + OLJFJH_02625 0.38 +0.9
476,609 + OLJFJH_02625 0.38 +0.2
476,609 + OLJFJH_02625 0.38 -1.6
476,609 + OLJFJH_02625 0.38 -0.9
476,609 + OLJFJH_02625 0.38 -1.4
476,609 + OLJFJH_02625 0.38 -1.0
476,610 - OLJFJH_02625 0.38 -0.4
476,610 - OLJFJH_02625 0.38 -0.3
476,610 - OLJFJH_02625 0.38 -0.4
476,610 - OLJFJH_02625 0.38 +0.8
476,610 - OLJFJH_02625 0.38 +0.4
476,610 - OLJFJH_02625 0.38 -0.4
476,610 - OLJFJH_02625 0.38 +1.2
476,613 + OLJFJH_02625 0.38 +2.7
476,614 - OLJFJH_02625 0.38 +0.4
476,633 + OLJFJH_02625 0.40 +0.0
476,633 + OLJFJH_02625 0.40 +0.3
476,633 + OLJFJH_02625 0.40 -0.7
476,635 + OLJFJH_02625 0.40 -0.9
476,689 - OLJFJH_02625 0.43 -0.8
476,900 - OLJFJH_02625 0.55 +0.5
476,915 + OLJFJH_02625 0.56 -0.1
476,916 - OLJFJH_02625 0.56 -0.5
476,916 - OLJFJH_02625 0.56 -0.7
476,916 - OLJFJH_02625 0.56 -0.8
476,916 - OLJFJH_02625 0.56 -0.9
476,960 + OLJFJH_02625 0.59 +0.3
476,961 - OLJFJH_02625 0.59 +0.2
476,961 - OLJFJH_02625 0.59 +0.3
476,961 - OLJFJH_02625 0.59 -0.3
476,961 - OLJFJH_02625 0.59 -0.6
477,055 - OLJFJH_02625 0.64 -0.5
477,094 - OLJFJH_02625 0.66 +0.5
477,178 + OLJFJH_02625 0.71 +0.7
477,178 + OLJFJH_02625 0.71 +0.0
477,382 + OLJFJH_02625 0.83 -0.2
477,399 - OLJFJH_02625 0.84 -0.6
477,433 + OLJFJH_02625 0.86 -0.1
477,433 + OLJFJH_02625 0.86 -1.0
477,434 - OLJFJH_02625 0.86 -0.5
477,434 - OLJFJH_02625 0.86 +0.2
477,434 - OLJFJH_02625 0.86 +0.1
477,434 - OLJFJH_02625 0.86 +0.8
477,438 - OLJFJH_02625 0.86 -0.4
477,459 + OLJFJH_02625 0.88 -0.0
477,479 - OLJFJH_02625 0.89 +0.8
477,490 - OLJFJH_02625 0.89 +0.1
477,501 + -0.9
477,501 + +0.3
477,502 - +0.2
477,502 - +0.3
477,508 + +1.4
477,509 - +1.8
477,509 - -0.4
477,512 - -1.0
477,536 - +1.0
477,668 + -1.2
477,668 + -0.3
477,673 - -1.0
477,685 - +0.2
477,804 + OLJFJH_02630 0.17 -0.8
477,806 + OLJFJH_02630 0.17 +0.0
477,806 + OLJFJH_02630 0.17 +0.5
477,807 - OLJFJH_02630 0.17 +0.2
477,807 - OLJFJH_02630 0.17 -0.4
477,807 - OLJFJH_02630 0.17 +0.2
477,807 - OLJFJH_02630 0.17 -1.3
478,026 + OLJFJH_02630 0.55 -1.4
478,026 + OLJFJH_02630 0.55 +0.7
478,027 - OLJFJH_02630 0.55 -0.3
478,236 + -0.4
478,238 + -0.3
478,238 + -1.1
478,239 - -0.9
478,239 - -0.5
478,240 + -0.2
478,241 - -1.0
478,241 - -0.8
478,241 - -0.2
478,241 - +0.5
478,241 - -1.7
478,276 + -0.1
478,306 - -0.1
478,381 - -1.0
478,470 + +0.2
478,470 + -2.8
478,470 + -1.2
478,470 + -0.1
478,470 + -0.6
478,471 - +0.7
478,471 - -0.3
478,471 - -0.1
478,471 - -0.6
478,621 - +0.4
478,631 - +0.3
478,645 + -0.9
478,669 - +2.6
478,669 - +0.8

Or see this region's nucleotide sequence