Strain Fitness in Erwinia amylovora T8 around OLJFJH_02605

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_02600 and OLJFJH_02605 are separated by 36 nucleotidesOLJFJH_02605 and OLJFJH_02610 are separated by 218 nucleotides OLJFJH_02600: OLJFJH_02600 - chaperonin GroEL, at 469,755 to 471,401 _02600 OLJFJH_02605: OLJFJH_02605 - co-chaperone GroES, at 471,438 to 471,731 _02605 OLJFJH_02610: OLJFJH_02610 - exclusion suppressor FxsA, at 471,950 to 472,408 _02610 Position (kb) 471 472Strain fitness (log2 ratio) -2 -1 0 1at 471.890 kb on + strandat 471.890 kb on + strandat 471.905 kb on - strandat 471.951 kb on + strandat 471.951 kb on + strandat 472.283 kb on + strand, within OLJFJH_02610at 472.283 kb on + strand, within OLJFJH_02610at 472.284 kb on - strand, within OLJFJH_02610at 472.284 kb on - strand, within OLJFJH_02610at 472.320 kb on - strand, within OLJFJH_02610at 472.385 kb on - strandat 472.385 kb on - strandat 472.421 kb on + strandat 472.421 kb on + strandat 472.422 kb on - strandat 472.481 kb on + strandat 472.481 kb on + strandat 472.482 kb on - strandat 472.482 kb on - strandat 472.482 kb on - strandat 472.482 kb on - strandat 472.482 kb on - strandat 472.482 kb on - strandat 472.485 kb on + strandat 472.639 kb on - strandat 472.639 kb on - strandat 472.700 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-8
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471,890 + +0.3
471,890 + +0.6
471,905 - +0.4
471,951 + -0.5
471,951 + +0.4
472,283 + OLJFJH_02610 0.73 -1.2
472,283 + OLJFJH_02610 0.73 +1.6
472,284 - OLJFJH_02610 0.73 +0.9
472,284 - OLJFJH_02610 0.73 -0.0
472,320 - OLJFJH_02610 0.81 +1.6
472,385 - -0.5
472,385 - -0.5
472,421 + +0.6
472,421 + -0.5
472,422 - +0.3
472,481 + +0.3
472,481 + -0.7
472,482 - +0.7
472,482 - -2.0
472,482 - -1.5
472,482 - -0.2
472,482 - -2.4
472,482 - +1.2
472,485 + +1.1
472,639 - +0.2
472,639 - +0.5
472,700 - +1.7

Or see this region's nucleotide sequence