Strain Fitness in Pseudomonas sp. RS175 around PFR28_04704

Experiment: D-Trehalose (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose (C) 5 mM
5,362,524	+		PFR28_04702	0.70	+0.3
5,362,524	+		PFR28_04702	0.70	+0.6
5,362,525	-		PFR28_04702	0.71	+0.5
5,362,525	-		PFR28_04702	0.71	+0.6
5,362,541	+		PFR28_04702	0.73	-0.4
5,362,541	+		PFR28_04702	0.73	-1.1
5,362,541	+		PFR28_04702	0.73	+0.1
5,362,541	+		PFR28_04702	0.73	+0.2
5,362,541	+		PFR28_04702	0.73	-0.0
5,362,541	+		PFR28_04702	0.73	-0.5
5,362,542	-		PFR28_04702	0.73	+1.5
5,362,542	-		PFR28_04702	0.73	-0.4
5,362,542	-		PFR28_04702	0.73	-1.2
5,362,542	-		PFR28_04702	0.73	+0.9
5,362,542	-		PFR28_04702	0.73	-1.9
5,362,542	-		PFR28_04702	0.73	-1.1
5,362,542	-		PFR28_04702	0.73	+1.8
5,362,542	-		PFR28_04702	0.73	-1.2
5,362,542	-		PFR28_04702	0.73	+0.8
5,362,542	-		PFR28_04702	0.73	+0.1
5,362,587	+		PFR28_04702	0.81	-2.4
5,362,602	+		PFR28_04702	0.83	-1.0
5,362,603	-		PFR28_04702	0.83	-0.5
5,362,705	-				+0.1
5,362,732	+				-0.2
5,362,732	+				+1.2
5,362,732	+				-0.1
5,362,732	+				+0.6
5,362,733	-				+0.7
5,362,733	-				+0.8
5,362,733	-				+1.5
5,362,733	-				-0.4
5,362,738	+				-0.7
5,362,738	+				-0.3
5,362,738	+				-2.7
5,362,738	+				+0.4
5,362,738	+				-1.4
5,362,739	-				-0.4
5,362,739	-				+0.2
5,362,739	-				+0.3
5,362,739	-				+0.8
5,362,739	-				+1.2
5,362,739	-				-2.2
5,362,837	+				+0.9
5,362,838	-				-0.1
5,362,838	-				-0.0
5,362,851	+				+1.7
5,362,851	+				-1.8
5,362,851	+				+1.0
5,362,851	+				+1.3
5,362,852	-				-0.3
5,362,861	+				-0.9
5,362,914	-		PFR28_04703	0.17	-0.5
5,362,914	-		PFR28_04703	0.17	-0.7
5,362,924	+		PFR28_04703	0.20	+0.0
5,362,924	+		PFR28_04703	0.20	-1.3
5,362,925	-		PFR28_04703	0.20	-0.5
5,363,013	+		PFR28_04703	0.40	-2.1
5,363,014	-		PFR28_04703	0.40	-0.7
5,363,120	+		PFR28_04703	0.64	-0.4
5,363,121	-		PFR28_04703	0.64	+0.3
5,363,134	+		PFR28_04703	0.67	+0.9
5,363,134	+		PFR28_04703	0.67	+0.2
5,363,212	+		PFR28_04703	0.85	-2.1
5,363,212	+		PFR28_04703	0.85	-0.7
5,363,213	-		PFR28_04703	0.85	+0.5
5,363,213	-		PFR28_04703	0.85	-0.8
5,363,242	+				-2.0
5,363,276	+				+0.7
5,363,276	+				+1.8
5,363,276	+				+0.6
5,363,277	-				-3.1
5,363,277	-				-0.5
5,363,341	+				-0.1
5,363,341	+				+0.1
5,363,341	+				+0.0
5,363,341	+				-0.6
5,363,341	+				+0.0
5,363,341	+				-0.8
5,363,342	-				+1.8
5,363,342	-				+0.8
5,363,342	-				-0.4
5,363,342	-				+0.4
5,363,342	-				-0.3
5,363,342	-				+0.3
5,363,342	-				-0.1
5,363,342	-				+0.2
5,363,417	+				+1.0
5,363,417	+				-0.5
5,363,417	+				-0.5
5,363,417	+				-2.1
5,363,417	+				-0.4
5,363,424	+				-2.3
5,363,424	+				-1.1
5,363,424	+				-0.3
5,363,425	-				-0.4
5,363,455	-				-2.2
5,363,561	+		PFR28_04704	0.12	+1.4
5,363,561	+		PFR28_04704	0.12	-0.0
5,363,561	+		PFR28_04704	0.12	+0.5
5,363,561	+		PFR28_04704	0.12	-1.6
5,363,562	-		PFR28_04704	0.13	-1.5
5,363,562	-		PFR28_04704	0.13	-0.0
5,363,562	-		PFR28_04704	0.13	+1.3
5,363,562	-		PFR28_04704	0.13	+0.8
5,363,572	+		PFR28_04704	0.15	-0.8
5,363,572	+		PFR28_04704	0.15	+0.3
5,363,572	+		PFR28_04704	0.15	+0.4
5,363,572	+		PFR28_04704	0.15	+0.5
5,363,572	+		PFR28_04704	0.15	-0.2
5,363,572	+		PFR28_04704	0.15	-1.1
5,363,573	-		PFR28_04704	0.16	+1.8
5,363,573	-		PFR28_04704	0.16	-0.4
5,363,573	-		PFR28_04704	0.16	-1.6
5,363,573	-		PFR28_04704	0.16	+0.2
5,363,573	-		PFR28_04704	0.16	-0.4
5,363,584	+		PFR28_04704	0.19	-1.0
5,363,584	+		PFR28_04704	0.19	+1.9
5,363,584	+		PFR28_04704	0.19	+1.1
5,363,632	+		PFR28_04704	0.32	+0.8
5,363,695	-		PFR28_04704	0.49	+0.7
5,363,695	-		PFR28_04704	0.49	+0.7
5,363,753	+		PFR28_04704	0.65	-0.2
5,363,768	+		PFR28_04704	0.69	-0.2
5,363,768	+		PFR28_04704	0.69	-0.2
5,363,768	+		PFR28_04704	0.69	-0.0
5,363,769	-		PFR28_04704	0.69	+0.5
5,363,782	+		PFR28_04704	0.73	+0.3
5,363,782	+		PFR28_04704	0.73	+0.0
5,363,783	-		PFR28_04704	0.73	-0.5
5,363,791	-		PFR28_04704	0.75	+0.1
5,363,791	-		PFR28_04704	0.75	+0.4
5,363,791	-		PFR28_04704	0.75	+0.3
5,363,812	+		PFR28_04704	0.81	+0.5
5,363,813	-		PFR28_04704	0.81	+0.8
5,363,819	+		PFR28_04704	0.83	+1.2
5,363,819	+		PFR28_04704	0.83	-0.2
5,363,819	+		PFR28_04704	0.83	-1.8
5,363,819	+		PFR28_04704	0.83	+0.5
5,363,819	+		PFR28_04704	0.83	-1.1
5,363,819	+		PFR28_04704	0.83	-0.6
5,363,820	-		PFR28_04704	0.83	-1.4
5,363,820	-		PFR28_04704	0.83	-0.4
5,363,820	-		PFR28_04704	0.83	-0.2
5,363,820	-		PFR28_04704	0.83	+0.4
5,363,820	-		PFR28_04704	0.83	+0.3
5,363,820	-		PFR28_04704	0.83	-1.1
5,363,820	-		PFR28_04704	0.83	+0.8
5,363,870	+				+0.2
5,363,870	+				-1.3
5,363,870	+				-0.9
5,363,870	+				-2.6
5,363,870	+				+0.5
5,363,870	+				-0.3
5,363,871	-				+0.1
5,363,871	-				-0.4
5,363,871	-				-0.2
5,363,871	-				+0.2
5,363,871	-				+1.1
5,363,871	-				+0.1
5,363,871	-				+2.5
5,363,871	-				-0.8
5,363,871	-				+0.8
5,363,944	+				-0.2
5,363,944	+				-3.4
5,363,944	+				+0.8
5,363,945	-				-0.6
5,363,945	-				+0.7
5,363,945	-				+0.4
5,363,945	-				+0.3
5,363,958	+				+0.2
5,363,958	+				+1.3
5,363,958	+				-0.1
5,363,958	+				+0.4
5,363,958	+				-1.6
5,363,958	+				+0.5
5,363,958	+				+0.7
5,363,959	-				-0.4
5,363,959	-				-1.1
5,363,959	-				-0.5
5,363,959	-				-1.7
5,363,959	-				+0.4
5,363,959	-				-0.0
5,363,960	+				-0.9
5,363,961	-				+0.2
5,363,961	-				+0.2
5,363,961	-				-0.7
5,363,961	-				-0.2
5,363,961	-				-1.0
5,363,961	-				+0.1
5,364,091	-				+0.7
5,364,092	+				+1.5
5,364,092	+				-0.8
5,364,093	-				-0.9
5,364,093	-				-0.2
5,364,116	-		PFR28_04705	0.12	+0.6
5,364,116	-		PFR28_04705	0.12	-1.5
5,364,158	+		PFR28_04705	0.16	-0.0
5,364,158	+		PFR28_04705	0.16	+0.7
5,364,158	+		PFR28_04705	0.16	-1.0
5,364,158	+		PFR28_04705	0.16	+1.0
5,364,158	+		PFR28_04705	0.16	+1.2
5,364,158	+		PFR28_04705	0.16	-0.8
5,364,158	+		PFR28_04705	0.16	-0.1
5,364,158	+		PFR28_04705	0.16	-0.4
5,364,158	+		PFR28_04705	0.16	+1.2
5,364,158	+		PFR28_04705	0.16	-1.8
5,364,158	+		PFR28_04705	0.16	-1.6
5,364,158	+		PFR28_04705	0.16	+1.2
5,364,159	-		PFR28_04705	0.16	+1.6
5,364,159	-		PFR28_04705	0.16	-0.4
5,364,159	-		PFR28_04705	0.16	+0.6
5,364,159	-		PFR28_04705	0.16	+2.1
5,364,159	-		PFR28_04705	0.16	-0.3
5,364,159	-		PFR28_04705	0.16	-2.4
5,364,159	-		PFR28_04705	0.16	-0.9
5,364,159	-		PFR28_04705	0.16	-2.4
5,364,159	-		PFR28_04705	0.16	-0.0
5,364,159	-		PFR28_04705	0.16	-0.2
5,364,200	+		PFR28_04705	0.20	+1.0
5,364,200	+		PFR28_04705	0.20	+1.1
5,364,200	+		PFR28_04705	0.20	-0.9
5,364,218	+		PFR28_04705	0.22	-1.3
5,364,218	+		PFR28_04705	0.22	+0.4
5,364,218	+		PFR28_04705	0.22	-1.3
5,364,219	-		PFR28_04705	0.22	+0.3
5,364,219	-		PFR28_04705	0.22	+0.4
5,364,219	-		PFR28_04705	0.22	+0.8
5,364,219	-		PFR28_04705	0.22	+0.7
5,364,219	-		PFR28_04705	0.22	+0.7
5,364,219	-		PFR28_04705	0.22	-0.4
5,364,257	+		PFR28_04705	0.25	-1.0
5,364,257	+		PFR28_04705	0.25	-0.7
5,364,258	-		PFR28_04705	0.25	+0.9
5,364,258	-		PFR28_04705	0.25	-0.6
5,364,329	+		PFR28_04705	0.32	-2.8
5,364,329	+		PFR28_04705	0.32	+1.9
5,364,330	-		PFR28_04705	0.32	-1.7
5,364,330	-		PFR28_04705	0.32	-1.1
5,364,330	-		PFR28_04705	0.32	-0.9
5,364,330	-		PFR28_04705	0.32	+1.1
5,364,330	-		PFR28_04705	0.32	+1.6
5,364,499	+		PFR28_04705	0.49	+0.0
5,364,499	+		PFR28_04705	0.49	-1.6
5,364,499	+		PFR28_04705	0.49	+2.0
5,364,499	+		PFR28_04705	0.49	-0.8
5,364,500	-		PFR28_04705	0.49	+1.1
5,364,503	+		PFR28_04705	0.49	-0.6
5,364,503	+		PFR28_04705	0.49	-2.2
5,364,503	+		PFR28_04705	0.49	-0.2
5,364,503	+		PFR28_04705	0.49	+0.6
5,364,503	+		PFR28_04705	0.49	-0.9
5,364,503	+		PFR28_04705	0.49	-2.2
5,364,504	-		PFR28_04705	0.49	+0.5
5,364,504	-		PFR28_04705	0.49	-0.2
5,364,504	-		PFR28_04705	0.49	+0.4
5,364,504	-		PFR28_04705	0.49	+0.8
5,364,504	-		PFR28_04705	0.49	+0.1
5,364,504	-		PFR28_04705	0.49	-0.3
5,364,504	-		PFR28_04705	0.49	+0.5
5,364,504	-		PFR28_04705	0.49	+1.4
5,364,504	-		PFR28_04705	0.49	-0.6
5,364,619	+		PFR28_04705	0.61	-1.6
5,364,619	+		PFR28_04705	0.61	-0.1
5,364,619	+		PFR28_04705	0.61	-0.9
5,364,619	+		PFR28_04705	0.61	-0.1
5,364,620	-		PFR28_04705	0.61	+1.5
5,364,620	-		PFR28_04705	0.61	-0.8
5,364,620	-		PFR28_04705	0.61	-0.5
5,364,620	-		PFR28_04705	0.61	+0.6
5,364,620	-		PFR28_04705	0.61	+0.5
5,364,620	-		PFR28_04705	0.61	-0.1
5,364,620	-		PFR28_04705	0.61	-3.5
5,364,692	+		PFR28_04705	0.68	-0.2
5,364,692	+		PFR28_04705	0.68	-1.1
5,364,692	+		PFR28_04705	0.68	-0.1
5,364,692	+		PFR28_04705	0.68	+0.2
5,364,692	+		PFR28_04705	0.68	+0.3
5,364,692	+		PFR28_04705	0.68	-1.5
5,364,692	+		PFR28_04705	0.68	-2.0
5,364,692	+		PFR28_04705	0.68	+1.0
5,364,692	+		PFR28_04705	0.68	+0.3
5,364,693	-		PFR28_04705	0.68	-0.5
5,364,693	-		PFR28_04705	0.68	+0.2
5,364,693	-		PFR28_04705	0.68	+0.9
5,364,693	-		PFR28_04705	0.68	-0.5
5,364,696	-		PFR28_04705	0.68	-0.4
5,364,784	+		PFR28_04705	0.77	+0.4
5,364,784	+		PFR28_04705	0.77	-1.7
5,364,785	-		PFR28_04705	0.77	-0.9
5,364,785	-		PFR28_04705	0.77	-0.2
5,364,809	+		PFR28_04705	0.79	+1.5
5,364,809	+		PFR28_04705	0.79	+0.3
5,364,809	+		PFR28_04705	0.79	-0.9
5,364,810	-		PFR28_04705	0.79	-0.8
5,364,810	-		PFR28_04705	0.79	-0.9
5,364,810	-		PFR28_04705	0.79	-1.2
5,364,810	-		PFR28_04705	0.79	+1.0
5,364,810	-		PFR28_04705	0.79	+0.4
5,364,818	+		PFR28_04705	0.80	-0.5
5,364,818	+		PFR28_04705	0.80	-0.6
5,364,819	-		PFR28_04705	0.80	+0.1
5,364,819	-		PFR28_04705	0.80	+0.5