Strain Fitness in Pseudomonas sp. RS175 around PFR28_03975

Experiment: D-Trehalose (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose (C) 5 mM
4,560,404	+		PFR28_03974	0.74	-1.5
4,560,404	+		PFR28_03974	0.74	-0.5
4,560,404	+		PFR28_03974	0.74	-1.4
4,560,405	-		PFR28_03974	0.74	+0.5
4,560,405	-		PFR28_03974	0.74	-0.8
4,560,539	-		PFR28_03974	0.79	-0.4
4,560,539	-		PFR28_03974	0.79	+0.7
4,560,572	+		PFR28_03974	0.80	+0.7
4,560,572	+		PFR28_03974	0.80	+0.2
4,560,572	+		PFR28_03974	0.80	+0.2
4,560,572	+		PFR28_03974	0.80	+0.4
4,560,572	+		PFR28_03974	0.80	-0.3
4,560,572	+		PFR28_03974	0.80	-0.3
4,560,572	+		PFR28_03974	0.80	-0.5
4,560,572	+		PFR28_03974	0.80	+1.5
4,560,572	+		PFR28_03974	0.80	-1.3
4,560,572	+		PFR28_03974	0.80	+1.9
4,560,572	+		PFR28_03974	0.80	-0.4
4,560,572	+		PFR28_03974	0.80	-0.0
4,560,572	+		PFR28_03974	0.80	-0.8
4,560,572	+		PFR28_03974	0.80	-1.2
4,560,572	+		PFR28_03974	0.80	-2.5
4,560,572	+		PFR28_03974	0.80	+1.0
4,560,572	+		PFR28_03974	0.80	+0.4
4,560,572	+		PFR28_03974	0.80	-0.3
4,560,572	+		PFR28_03974	0.80	+0.4
4,560,572	+		PFR28_03974	0.80	-0.8
4,560,572	+		PFR28_03974	0.80	+0.5
4,560,572	+		PFR28_03974	0.80	+0.2
4,560,572	+		PFR28_03974	0.80	+0.3
4,560,572	+		PFR28_03974	0.80	-0.0
4,560,572	+		PFR28_03974	0.80	-0.1
4,560,572	+		PFR28_03974	0.80	+0.6
4,560,572	+		PFR28_03974	0.80	-0.1
4,560,572	+		PFR28_03974	0.80	-1.6
4,560,572	+		PFR28_03974	0.80	-0.1
4,560,572	+		PFR28_03974	0.80	+0.5
4,560,572	+		PFR28_03974	0.80	+0.5
4,560,572	+		PFR28_03974	0.80	+0.3
4,560,572	+		PFR28_03974	0.80	+0.3
4,560,572	+		PFR28_03974	0.80	-0.1
4,560,572	+		PFR28_03974	0.80	-0.8
4,560,572	+		PFR28_03974	0.80	-0.2
4,560,572	+		PFR28_03974	0.80	-0.5
4,560,572	+		PFR28_03974	0.80	+1.4
4,560,572	+		PFR28_03974	0.80	+0.1
4,560,573	-		PFR28_03974	0.80	-0.5
4,560,573	-		PFR28_03974	0.80	-0.2
4,560,573	-		PFR28_03974	0.80	-1.5
4,560,573	-		PFR28_03974	0.80	+0.4
4,560,573	-		PFR28_03974	0.80	+0.3
4,560,573	-		PFR28_03974	0.80	+0.2
4,560,573	-		PFR28_03974	0.80	-0.2
4,560,573	-		PFR28_03974	0.80	+0.3
4,560,573	-		PFR28_03974	0.80	+0.1
4,560,573	-		PFR28_03974	0.80	-0.5
4,560,573	-		PFR28_03974	0.80	-3.9
4,560,573	-		PFR28_03974	0.80	-2.2
4,560,573	-		PFR28_03974	0.80	+0.9
4,560,573	-		PFR28_03974	0.80	-0.6
4,560,573	-		PFR28_03974	0.80	-0.9
4,560,573	-		PFR28_03974	0.80	+0.0
4,560,573	-		PFR28_03974	0.80	-1.0
4,560,573	-		PFR28_03974	0.80	-0.7
4,560,573	-		PFR28_03974	0.80	-0.3
4,560,573	-		PFR28_03974	0.80	+0.5
4,560,573	-		PFR28_03974	0.80	-1.1
4,560,573	-		PFR28_03974	0.80	-0.1
4,560,573	-		PFR28_03974	0.80	+2.1
4,560,573	-		PFR28_03974	0.80	-0.4
4,560,573	-		PFR28_03974	0.80	-1.3
4,560,573	-		PFR28_03974	0.80	-0.5
4,560,573	-		PFR28_03974	0.80	+0.0
4,560,573	-		PFR28_03974	0.80	+0.7
4,560,573	-		PFR28_03974	0.80	+0.6
4,560,573	-		PFR28_03974	0.80	-1.2
4,560,573	-		PFR28_03974	0.80	-1.7
4,560,573	-		PFR28_03974	0.80	+0.3
4,560,573	-		PFR28_03974	0.80	+0.2
4,560,573	-		PFR28_03974	0.80	+0.3
4,560,573	-		PFR28_03974	0.80	+1.4
4,560,573	-		PFR28_03974	0.80	+1.2
4,560,573	-		PFR28_03974	0.80	-0.6
4,560,605	+		PFR28_03974	0.81	-0.1
4,560,605	+		PFR28_03974	0.81	+2.1
4,560,605	+		PFR28_03974	0.81	-1.5
4,560,606	-		PFR28_03974	0.81	+0.7
4,560,632	+		PFR28_03974	0.82	+0.5
4,560,632	+		PFR28_03974	0.82	-0.3
4,560,632	+		PFR28_03974	0.82	-0.1
4,560,633	-		PFR28_03974	0.82	+1.7
4,560,633	-		PFR28_03974	0.82	-0.1
4,560,633	-		PFR28_03974	0.82	+0.2
4,560,633	-		PFR28_03974	0.82	+0.1
4,560,633	-		PFR28_03974	0.82	-1.4
4,560,633	-		PFR28_03974	0.82	-0.1
4,560,752	+		PFR28_03974	0.87	+0.3
4,560,752	+		PFR28_03974	0.87	+0.6
4,560,752	+		PFR28_03974	0.87	-0.9
4,560,752	+		PFR28_03974	0.87	-1.5
4,560,752	+		PFR28_03974	0.87	-0.7
4,560,752	+		PFR28_03974	0.87	+0.4
4,560,753	-		PFR28_03974	0.87	-1.3
4,560,753	-		PFR28_03974	0.87	+1.3
4,560,753	-		PFR28_03974	0.87	+0.2
4,560,854	+				-2.0
4,560,854	+				+0.3
4,560,854	+				+0.0
4,560,854	+				+2.0
4,560,854	+				+0.5
4,560,855	-				-0.2
4,560,855	-				+1.6
4,560,855	-				-0.5
4,560,855	-				+0.4
4,560,855	-				-1.7
4,561,097	+				+0.3
4,561,254	+				+1.1
4,561,254	+				-0.9
4,561,255	-				+0.5
4,561,255	-				-0.1
4,561,255	-				-3.0
4,561,255	-				+0.4
4,561,305	+		PFR28_03975	0.15	+0.2
4,561,305	+		PFR28_03975	0.15	+1.0
4,561,305	+		PFR28_03975	0.15	-0.2
4,561,306	-		PFR28_03975	0.15	+1.3
4,561,306	-		PFR28_03975	0.15	+0.0
4,561,306	-		PFR28_03975	0.15	-0.2
4,561,362	+		PFR28_03975	0.27	+0.7
4,561,362	+		PFR28_03975	0.27	+0.5
4,561,362	+		PFR28_03975	0.27	-0.9
4,561,362	+		PFR28_03975	0.27	+0.6
4,561,363	-		PFR28_03975	0.28	-0.1
4,561,363	-		PFR28_03975	0.28	+0.5
4,561,363	-		PFR28_03975	0.28	+1.4
4,561,363	-		PFR28_03975	0.28	+0.1
4,561,363	-		PFR28_03975	0.28	+0.2
4,561,363	-		PFR28_03975	0.28	-1.8
4,561,419	+		PFR28_03975	0.40	-0.8
4,561,419	+		PFR28_03975	0.40	-0.1
4,561,419	+		PFR28_03975	0.40	+0.6
4,561,419	+		PFR28_03975	0.40	-0.2
4,561,419	+		PFR28_03975	0.40	-1.6
4,561,420	-		PFR28_03975	0.40	+0.6
4,561,570	+		PFR28_03975	0.72	+1.0
4,561,570	+		PFR28_03975	0.72	+0.6
4,561,570	+		PFR28_03975	0.72	-1.0
4,561,570	+		PFR28_03975	0.72	-0.2
4,561,570	+		PFR28_03975	0.72	+1.1
4,561,571	-		PFR28_03975	0.72	+0.5
4,561,571	-		PFR28_03975	0.72	+0.2
4,561,571	-		PFR28_03975	0.72	+1.1
4,561,571	-		PFR28_03975	0.72	-1.3
4,561,571	-		PFR28_03975	0.72	+0.4
4,561,571	-		PFR28_03975	0.72	-0.3
4,561,571	-		PFR28_03975	0.72	+0.5
4,561,579	-		PFR28_03975	0.74	-0.3
4,561,579	-		PFR28_03975	0.74	+0.7
4,561,579	-		PFR28_03975	0.74	-0.8
4,561,579	-		PFR28_03975	0.74	+0.2
4,561,588	+		PFR28_03975	0.76	-0.5
4,561,589	-		PFR28_03975	0.76	+2.0
4,561,605	+		PFR28_03975	0.80	-0.2
4,561,605	+		PFR28_03975	0.80	+0.2
4,561,606	-		PFR28_03975	0.80	-3.0
4,561,626	+		PFR28_03975	0.84	+0.6
4,561,627	-		PFR28_03975	0.84	+0.1
4,561,679	+				-0.3
4,561,679	+				-0.8
4,561,680	-				+1.3
4,561,680	-				-1.3
4,561,705	+				-1.5
4,561,705	+				+0.1
4,561,705	+				+0.4
4,561,705	+				-0.2
4,561,705	+				-0.7
4,561,705	+				+2.3
4,561,705	+				-1.2
4,561,706	-				-0.1
4,561,706	-				+0.5
4,561,706	-				+1.3
4,561,732	+				-0.4
4,561,776	-				-3.0
4,561,801	-				-2.0
4,561,807	-				-0.3
4,561,807	-				+0.9
4,561,859	+				-1.0
4,561,860	-				-0.9
4,561,860	-				+0.6
4,561,860	-				-1.9
4,561,863	+				-0.0
4,561,864	-				-0.5
4,561,864	-				-0.2
4,561,980	+				-0.8
4,561,984	-				+0.3
4,561,984	-				-0.3
4,561,984	-				-2.0
4,562,045	+		PFR28_03976	0.13	-0.9
4,562,045	+		PFR28_03976	0.13	+0.7
4,562,045	+		PFR28_03976	0.13	-0.0
4,562,045	+		PFR28_03976	0.13	+0.3
4,562,045	+		PFR28_03976	0.13	+0.6
4,562,045	+		PFR28_03976	0.13	-0.3
4,562,045	+		PFR28_03976	0.13	-1.2
4,562,045	+		PFR28_03976	0.13	+0.3
4,562,046	-		PFR28_03976	0.13	+0.5
4,562,046	-		PFR28_03976	0.13	+0.8
4,562,046	-		PFR28_03976	0.13	-0.8
4,562,046	-		PFR28_03976	0.13	+0.5
4,562,046	-		PFR28_03976	0.13	-0.4
4,562,048	+		PFR28_03976	0.13	-1.8
4,562,048	+		PFR28_03976	0.13	-0.2
4,562,049	-		PFR28_03976	0.13	-0.1
4,562,049	-		PFR28_03976	0.13	-1.2
4,562,049	-		PFR28_03976	0.13	+0.4
4,562,056	-		PFR28_03976	0.14	+0.4
4,562,056	-		PFR28_03976	0.14	+1.2
4,562,056	-		PFR28_03976	0.14	+0.3
4,562,072	+		PFR28_03976	0.15	+0.6
4,562,115	-		PFR28_03976	0.18	-1.0
4,562,144	+		PFR28_03976	0.20	-1.1
4,562,144	+		PFR28_03976	0.20	+0.3
4,562,144	+		PFR28_03976	0.20	-0.4
4,562,144	+		PFR28_03976	0.20	-0.2
4,562,144	+		PFR28_03976	0.20	-1.7
4,562,144	+		PFR28_03976	0.20	+0.7
4,562,144	+		PFR28_03976	0.20	-0.2
4,562,144	+		PFR28_03976	0.20	-0.1
4,562,144	+		PFR28_03976	0.20	-0.6
4,562,144	+		PFR28_03976	0.20	+0.0
4,562,145	-		PFR28_03976	0.20	+0.0
4,562,145	-		PFR28_03976	0.20	-0.4
4,562,145	-		PFR28_03976	0.20	+0.5
4,562,145	-		PFR28_03976	0.20	+0.4
4,562,145	-		PFR28_03976	0.20	+0.2
4,562,145	-		PFR28_03976	0.20	-0.9
4,562,145	-		PFR28_03976	0.20	+1.0
4,562,145	-		PFR28_03976	0.20	+0.2
4,562,145	-		PFR28_03976	0.20	+0.3
4,562,145	-		PFR28_03976	0.20	+0.2
4,562,145	-		PFR28_03976	0.20	+0.7
4,562,145	-		PFR28_03976	0.20	-1.7
4,562,145	-		PFR28_03976	0.20	-1.1
4,562,145	-		PFR28_03976	0.20	+1.3
4,562,145	-		PFR28_03976	0.20	+0.5
4,562,145	-		PFR28_03976	0.20	+0.2
4,562,159	+		PFR28_03976	0.21	-0.8
4,562,160	-		PFR28_03976	0.21	+0.2
4,562,213	+		PFR28_03976	0.24	+1.4
4,562,213	+		PFR28_03976	0.24	-3.4
4,562,213	+		PFR28_03976	0.24	+0.1
4,562,213	+		PFR28_03976	0.24	-1.4
4,562,214	-		PFR28_03976	0.25	-1.4
4,562,214	-		PFR28_03976	0.25	+0.2
4,562,214	-		PFR28_03976	0.25	-0.5
4,562,214	-		PFR28_03976	0.25	-3.3
4,562,393	+		PFR28_03976	0.37	+1.5
4,562,393	+		PFR28_03976	0.37	-0.5
4,562,394	-		PFR28_03976	0.37	+1.3
4,562,466	+		PFR28_03976	0.42	+0.5
4,562,466	+		PFR28_03976	0.42	-0.1
4,562,466	+		PFR28_03976	0.42	-2.4
4,562,466	+		PFR28_03976	0.42	+0.7
4,562,489	+		PFR28_03976	0.44	-1.1
4,562,490	-		PFR28_03976	0.44	+0.5
4,562,602	-		PFR28_03976	0.51	+0.7
4,562,660	+		PFR28_03976	0.55	+0.4
4,562,660	+		PFR28_03976	0.55	-2.0
4,562,660	+		PFR28_03976	0.55	+1.0
4,562,660	+		PFR28_03976	0.55	+1.9
4,562,661	-		PFR28_03976	0.55	-0.5
4,562,661	-		PFR28_03976	0.55	-0.5
4,562,661	-		PFR28_03976	0.55	-0.5
4,562,661	-		PFR28_03976	0.55	+0.5
4,562,661	-		PFR28_03976	0.55	+1.5