Strain Fitness in Pseudomonas sp. RS175 around PFR28_00568

Experiment: D-Trehalose (C) 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00567 and PFR28_00568 overlap by 8 nucleotidesPFR28_00568 and PFR28_00569 are separated by 2 nucleotides PFR28_00567: PFR28_00567 - Melibiose/raffinose/stachyose import permease protein MelD, at 607,906 to 608,814 _00567 PFR28_00568: PFR28_00568 - Diacetylchitobiose uptake system permease protein NgcG, at 608,807 to 609,652 _00568 PFR28_00569: PFR28_00569 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 609,655 to 610,815 _00569 Position (kb) 608 609 610Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 607.878 kb on + strandat 607.878 kb on + strandat 607.878 kb on + strandat 607.879 kb on - strandat 607.977 kb on - strandat 608.014 kb on + strand, within PFR28_00567at 608.014 kb on + strand, within PFR28_00567at 608.014 kb on + strand, within PFR28_00567at 608.014 kb on + strand, within PFR28_00567at 608.014 kb on + strand, within PFR28_00567at 608.014 kb on + strand, within PFR28_00567at 608.014 kb on + strand, within PFR28_00567at 608.014 kb on + strand, within PFR28_00567at 608.014 kb on + strand, within PFR28_00567at 608.014 kb on + strand, within PFR28_00567at 608.015 kb on - strand, within PFR28_00567at 608.015 kb on - strand, within PFR28_00567at 608.015 kb on - strand, within PFR28_00567at 608.015 kb on - strand, within PFR28_00567at 608.015 kb on - strand, within PFR28_00567at 608.015 kb on - strand, within PFR28_00567at 608.015 kb on - strand, within PFR28_00567at 608.015 kb on - strand, within PFR28_00567at 608.015 kb on - strand, within PFR28_00567at 608.015 kb on - strand, within PFR28_00567at 608.015 kb on - strand, within PFR28_00567at 608.015 kb on - strand, within PFR28_00567at 608.015 kb on - strand, within PFR28_00567at 608.015 kb on - strand, within PFR28_00567at 608.015 kb on - strand, within PFR28_00567at 608.015 kb on - strand, within PFR28_00567at 608.015 kb on - strand, within PFR28_00567at 608.020 kb on + strand, within PFR28_00567at 608.020 kb on + strand, within PFR28_00567at 608.020 kb on + strand, within PFR28_00567at 608.020 kb on + strand, within PFR28_00567at 608.020 kb on + strand, within PFR28_00567at 608.020 kb on + strand, within PFR28_00567at 608.021 kb on - strand, within PFR28_00567at 608.021 kb on - strand, within PFR28_00567at 608.021 kb on - strand, within PFR28_00567at 608.021 kb on - strand, within PFR28_00567at 608.021 kb on - strand, within PFR28_00567at 608.021 kb on - strand, within PFR28_00567at 608.021 kb on - strand, within PFR28_00567at 608.058 kb on + strand, within PFR28_00567at 608.058 kb on + strand, within PFR28_00567at 608.058 kb on + strand, within PFR28_00567at 608.058 kb on + strand, within PFR28_00567at 608.059 kb on - strand, within PFR28_00567at 608.059 kb on - strand, within PFR28_00567at 608.059 kb on - strand, within PFR28_00567at 608.059 kb on - strand, within PFR28_00567at 608.074 kb on + strand, within PFR28_00567at 608.074 kb on + strand, within PFR28_00567at 608.074 kb on + strand, within PFR28_00567at 608.074 kb on + strand, within PFR28_00567at 608.074 kb on + strand, within PFR28_00567at 608.075 kb on - strand, within PFR28_00567at 608.075 kb on - strand, within PFR28_00567at 608.075 kb on - strand, within PFR28_00567at 608.075 kb on - strand, within PFR28_00567at 608.075 kb on - strand, within PFR28_00567at 608.098 kb on + strand, within PFR28_00567at 608.099 kb on - strand, within PFR28_00567at 608.254 kb on + strand, within PFR28_00567at 608.254 kb on + strand, within PFR28_00567at 608.254 kb on + strand, within PFR28_00567at 608.254 kb on + strand, within PFR28_00567at 608.254 kb on + strand, within PFR28_00567at 608.404 kb on + strand, within PFR28_00567at 608.404 kb on + strand, within PFR28_00567at 608.405 kb on - strand, within PFR28_00567at 608.405 kb on - strand, within PFR28_00567at 608.536 kb on + strand, within PFR28_00567at 608.537 kb on - strand, within PFR28_00567at 608.537 kb on - strand, within PFR28_00567at 608.537 kb on - strand, within PFR28_00567at 608.686 kb on + strand, within PFR28_00567at 608.686 kb on + strand, within PFR28_00567at 608.686 kb on + strand, within PFR28_00567at 608.686 kb on + strand, within PFR28_00567at 608.686 kb on + strand, within PFR28_00567at 608.686 kb on + strand, within PFR28_00567at 608.687 kb on - strand, within PFR28_00567at 608.687 kb on - strand, within PFR28_00567at 608.687 kb on - strand, within PFR28_00567at 608.776 kb on + strandat 608.776 kb on + strandat 608.776 kb on + strandat 608.776 kb on + strandat 608.776 kb on + strandat 608.777 kb on - strandat 608.777 kb on - strandat 608.782 kb on + strandat 608.782 kb on + strandat 608.812 kb on + strandat 608.813 kb on - strandat 608.859 kb on - strandat 608.866 kb on - strandat 608.888 kb on + strandat 608.888 kb on + strandat 608.888 kb on + strandat 608.889 kb on - strandat 609.023 kb on + strand, within PFR28_00568at 609.095 kb on + strand, within PFR28_00568at 609.096 kb on - strand, within PFR28_00568at 609.260 kb on + strand, within PFR28_00568at 609.296 kb on + strand, within PFR28_00568at 609.296 kb on + strand, within PFR28_00568at 609.296 kb on + strand, within PFR28_00568at 609.296 kb on + strand, within PFR28_00568at 609.296 kb on + strand, within PFR28_00568at 609.296 kb on + strand, within PFR28_00568at 609.296 kb on + strand, within PFR28_00568at 609.296 kb on + strand, within PFR28_00568at 609.297 kb on - strand, within PFR28_00568at 609.297 kb on - strand, within PFR28_00568at 609.299 kb on + strand, within PFR28_00568at 609.299 kb on + strand, within PFR28_00568at 609.299 kb on + strand, within PFR28_00568at 609.299 kb on + strand, within PFR28_00568at 609.299 kb on + strand, within PFR28_00568at 609.299 kb on + strand, within PFR28_00568at 609.300 kb on - strand, within PFR28_00568at 609.300 kb on - strand, within PFR28_00568at 609.300 kb on - strand, within PFR28_00568at 609.300 kb on - strand, within PFR28_00568at 609.300 kb on - strand, within PFR28_00568at 609.300 kb on - strand, within PFR28_00568at 609.300 kb on - strand, within PFR28_00568at 609.300 kb on - strand, within PFR28_00568at 609.300 kb on - strand, within PFR28_00568at 609.300 kb on - strand, within PFR28_00568at 609.539 kb on + strand, within PFR28_00568at 609.539 kb on + strand, within PFR28_00568at 609.539 kb on + strand, within PFR28_00568at 609.539 kb on + strand, within PFR28_00568at 609.539 kb on + strand, within PFR28_00568at 609.540 kb on - strand, within PFR28_00568at 609.540 kb on - strand, within PFR28_00568at 609.541 kb on + strand, within PFR28_00568at 609.541 kb on + strand, within PFR28_00568at 609.541 kb on + strand, within PFR28_00568at 609.542 kb on - strand, within PFR28_00568at 609.542 kb on - strand, within PFR28_00568at 609.542 kb on - strand, within PFR28_00568at 609.542 kb on - strand, within PFR28_00568at 609.542 kb on - strand, within PFR28_00568at 609.542 kb on - strand, within PFR28_00568at 609.542 kb on - strand, within PFR28_00568at 609.542 kb on - strand, within PFR28_00568at 609.593 kb on + strandat 609.594 kb on - strandat 609.594 kb on - strandat 609.594 kb on - strandat 609.594 kb on - strandat 609.611 kb on + strandat 609.611 kb on + strandat 609.612 kb on - strandat 609.612 kb on - strandat 609.651 kb on - strandat 609.680 kb on + strandat 609.680 kb on + strandat 609.680 kb on + strandat 609.680 kb on + strandat 609.680 kb on + strandat 609.681 kb on - strandat 609.681 kb on - strandat 609.691 kb on + strandat 609.764 kb on + strandat 609.910 kb on + strand, within PFR28_00569at 609.910 kb on + strand, within PFR28_00569at 609.911 kb on - strand, within PFR28_00569at 610.047 kb on + strand, within PFR28_00569at 610.047 kb on + strand, within PFR28_00569at 610.047 kb on + strand, within PFR28_00569at 610.048 kb on - strand, within PFR28_00569at 610.123 kb on + strand, within PFR28_00569at 610.123 kb on + strand, within PFR28_00569at 610.123 kb on + strand, within PFR28_00569at 610.123 kb on + strand, within PFR28_00569at 610.124 kb on - strand, within PFR28_00569at 610.124 kb on - strand, within PFR28_00569at 610.225 kb on + strand, within PFR28_00569at 610.225 kb on + strand, within PFR28_00569at 610.225 kb on + strand, within PFR28_00569at 610.225 kb on + strand, within PFR28_00569at 610.225 kb on + strand, within PFR28_00569at 610.226 kb on - strand, within PFR28_00569at 610.226 kb on - strand, within PFR28_00569at 610.324 kb on + strand, within PFR28_00569at 610.324 kb on + strand, within PFR28_00569at 610.324 kb on + strand, within PFR28_00569at 610.324 kb on + strand, within PFR28_00569at 610.324 kb on + strand, within PFR28_00569at 610.324 kb on + strand, within PFR28_00569at 610.325 kb on - strand, within PFR28_00569at 610.325 kb on - strand, within PFR28_00569at 610.325 kb on - strand, within PFR28_00569at 610.325 kb on - strand, within PFR28_00569at 610.325 kb on - strand, within PFR28_00569at 610.325 kb on - strand, within PFR28_00569at 610.325 kb on - strand, within PFR28_00569at 610.325 kb on - strand, within PFR28_00569at 610.325 kb on - strand, within PFR28_00569at 610.325 kb on - strand, within PFR28_00569at 610.325 kb on - strand, within PFR28_00569at 610.325 kb on - strand, within PFR28_00569at 610.325 kb on - strand, within PFR28_00569at 610.325 kb on - strand, within PFR28_00569at 610.325 kb on - strand, within PFR28_00569at 610.325 kb on - strand, within PFR28_00569

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C) 5 mM
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607,878 + +0.7
607,878 + -0.2
607,878 + +1.1
607,879 - -1.6
607,977 - -1.2
608,014 + PFR28_00567 0.12 -2.2
608,014 + PFR28_00567 0.12 -2.4
608,014 + PFR28_00567 0.12 -2.7
608,014 + PFR28_00567 0.12 -1.5
608,014 + PFR28_00567 0.12 -2.2
608,014 + PFR28_00567 0.12 -0.2
608,014 + PFR28_00567 0.12 -4.3
608,014 + PFR28_00567 0.12 -3.9
608,014 + PFR28_00567 0.12 -3.0
608,014 + PFR28_00567 0.12 -0.9
608,015 - PFR28_00567 0.12 -1.4
608,015 - PFR28_00567 0.12 -2.8
608,015 - PFR28_00567 0.12 -0.7
608,015 - PFR28_00567 0.12 -3.8
608,015 - PFR28_00567 0.12 -1.2
608,015 - PFR28_00567 0.12 -2.2
608,015 - PFR28_00567 0.12 -1.2
608,015 - PFR28_00567 0.12 -2.6
608,015 - PFR28_00567 0.12 -1.0
608,015 - PFR28_00567 0.12 -2.8
608,015 - PFR28_00567 0.12 -3.6
608,015 - PFR28_00567 0.12 -2.4
608,015 - PFR28_00567 0.12 -1.4
608,015 - PFR28_00567 0.12 -1.6
608,015 - PFR28_00567 0.12 -0.9
608,015 - PFR28_00567 0.12 -1.9
608,015 - PFR28_00567 0.12 -1.6
608,020 + PFR28_00567 0.13 -0.2
608,020 + PFR28_00567 0.13 -1.4
608,020 + PFR28_00567 0.13 -3.6
608,020 + PFR28_00567 0.13 -1.2
608,020 + PFR28_00567 0.13 -2.6
608,020 + PFR28_00567 0.13 -3.7
608,021 - PFR28_00567 0.13 -1.8
608,021 - PFR28_00567 0.13 -3.3
608,021 - PFR28_00567 0.13 -3.7
608,021 - PFR28_00567 0.13 -1.3
608,021 - PFR28_00567 0.13 -1.6
608,021 - PFR28_00567 0.13 -3.7
608,021 - PFR28_00567 0.13 -4.3
608,058 + PFR28_00567 0.17 -1.2
608,058 + PFR28_00567 0.17 -1.5
608,058 + PFR28_00567 0.17 +1.2
608,058 + PFR28_00567 0.17 -1.3
608,059 - PFR28_00567 0.17 -3.5
608,059 - PFR28_00567 0.17 -1.4
608,059 - PFR28_00567 0.17 -2.3
608,059 - PFR28_00567 0.17 -2.0
608,074 + PFR28_00567 0.18 -0.2
608,074 + PFR28_00567 0.18 -1.0
608,074 + PFR28_00567 0.18 -1.8
608,074 + PFR28_00567 0.18 +0.1
608,074 + PFR28_00567 0.18 -1.5
608,075 - PFR28_00567 0.19 -2.7
608,075 - PFR28_00567 0.19 -2.2
608,075 - PFR28_00567 0.19 -2.9
608,075 - PFR28_00567 0.19 -3.5
608,075 - PFR28_00567 0.19 +1.1
608,098 + PFR28_00567 0.21 -3.1
608,099 - PFR28_00567 0.21 -2.6
608,254 + PFR28_00567 0.38 -3.1
608,254 + PFR28_00567 0.38 -0.6
608,254 + PFR28_00567 0.38 -3.3
608,254 + PFR28_00567 0.38 -1.8
608,254 + PFR28_00567 0.38 -4.0
608,404 + PFR28_00567 0.55 -0.9
608,404 + PFR28_00567 0.55 -2.1
608,405 - PFR28_00567 0.55 -2.7
608,405 - PFR28_00567 0.55 -2.3
608,536 + PFR28_00567 0.69 -2.7
608,537 - PFR28_00567 0.69 -1.4
608,537 - PFR28_00567 0.69 -3.4
608,537 - PFR28_00567 0.69 -2.9
608,686 + PFR28_00567 0.86 -1.9
608,686 + PFR28_00567 0.86 -3.4
608,686 + PFR28_00567 0.86 -0.0
608,686 + PFR28_00567 0.86 -3.0
608,686 + PFR28_00567 0.86 -1.6
608,686 + PFR28_00567 0.86 -2.8
608,687 - PFR28_00567 0.86 -4.0
608,687 - PFR28_00567 0.86 +0.2
608,687 - PFR28_00567 0.86 -4.1
608,776 + -1.7
608,776 + -3.6
608,776 + -4.0
608,776 + -3.8
608,776 + -1.9
608,777 - -1.5
608,777 - -1.4
608,782 + -1.7
608,782 + -2.6
608,812 + -2.9
608,813 - -2.3
608,859 - -2.8
608,866 - -0.8
608,888 + -2.2
608,888 + -3.5
608,888 + -2.8
608,889 - -1.2
609,023 + PFR28_00568 0.26 -4.0
609,095 + PFR28_00568 0.34 -1.6
609,096 - PFR28_00568 0.34 -1.6
609,260 + PFR28_00568 0.54 -2.5
609,296 + PFR28_00568 0.58 -1.2
609,296 + PFR28_00568 0.58 -1.1
609,296 + PFR28_00568 0.58 -1.0
609,296 + PFR28_00568 0.58 -0.5
609,296 + PFR28_00568 0.58 -0.7
609,296 + PFR28_00568 0.58 -1.8
609,296 + PFR28_00568 0.58 -1.6
609,296 + PFR28_00568 0.58 -1.6
609,297 - PFR28_00568 0.58 -1.6
609,297 - PFR28_00568 0.58 -2.2
609,299 + PFR28_00568 0.58 -2.1
609,299 + PFR28_00568 0.58 -3.7
609,299 + PFR28_00568 0.58 -0.2
609,299 + PFR28_00568 0.58 -0.7
609,299 + PFR28_00568 0.58 +1.0
609,299 + PFR28_00568 0.58 -0.6
609,300 - PFR28_00568 0.58 -3.1
609,300 - PFR28_00568 0.58 -1.5
609,300 - PFR28_00568 0.58 -3.9
609,300 - PFR28_00568 0.58 -3.7
609,300 - PFR28_00568 0.58 -2.1
609,300 - PFR28_00568 0.58 -3.4
609,300 - PFR28_00568 0.58 -2.0
609,300 - PFR28_00568 0.58 -3.7
609,300 - PFR28_00568 0.58 -1.4
609,300 - PFR28_00568 0.58 -1.6
609,539 + PFR28_00568 0.87 -2.4
609,539 + PFR28_00568 0.87 -2.8
609,539 + PFR28_00568 0.87 -1.9
609,539 + PFR28_00568 0.87 -1.2
609,539 + PFR28_00568 0.87 -3.2
609,540 - PFR28_00568 0.87 -3.0
609,540 - PFR28_00568 0.87 -2.0
609,541 + PFR28_00568 0.87 -0.5
609,541 + PFR28_00568 0.87 -3.5
609,541 + PFR28_00568 0.87 -2.5
609,542 - PFR28_00568 0.87 -0.2
609,542 - PFR28_00568 0.87 -2.6
609,542 - PFR28_00568 0.87 -4.1
609,542 - PFR28_00568 0.87 -3.4
609,542 - PFR28_00568 0.87 -4.4
609,542 - PFR28_00568 0.87 -2.9
609,542 - PFR28_00568 0.87 -0.8
609,542 - PFR28_00568 0.87 -0.9
609,593 + -2.1
609,594 - -2.5
609,594 - -1.5
609,594 - -1.4
609,594 - +0.1
609,611 + -3.1
609,611 + -3.1
609,612 - +0.2
609,612 - -1.7
609,651 - -0.7
609,680 + -1.1
609,680 + -0.6
609,680 + -0.6
609,680 + -3.9
609,680 + -1.3
609,681 - -1.6
609,681 - -3.3
609,691 + -3.9
609,764 + -3.8
609,910 + PFR28_00569 0.22 -2.3
609,910 + PFR28_00569 0.22 -2.0
609,911 - PFR28_00569 0.22 -4.8
610,047 + PFR28_00569 0.34 -1.9
610,047 + PFR28_00569 0.34 -2.3
610,047 + PFR28_00569 0.34 -1.0
610,048 - PFR28_00569 0.34 -2.9
610,123 + PFR28_00569 0.40 -1.3
610,123 + PFR28_00569 0.40 -4.5
610,123 + PFR28_00569 0.40 -2.1
610,123 + PFR28_00569 0.40 -1.4
610,124 - PFR28_00569 0.40 -3.6
610,124 - PFR28_00569 0.40 -1.2
610,225 + PFR28_00569 0.49 -3.2
610,225 + PFR28_00569 0.49 -3.4
610,225 + PFR28_00569 0.49 -1.8
610,225 + PFR28_00569 0.49 -2.4
610,225 + PFR28_00569 0.49 -3.2
610,226 - PFR28_00569 0.49 -0.9
610,226 - PFR28_00569 0.49 -1.8
610,324 + PFR28_00569 0.58 -4.3
610,324 + PFR28_00569 0.58 -0.2
610,324 + PFR28_00569 0.58 -0.6
610,324 + PFR28_00569 0.58 -0.6
610,324 + PFR28_00569 0.58 -3.6
610,324 + PFR28_00569 0.58 -4.6
610,325 - PFR28_00569 0.58 -2.5
610,325 - PFR28_00569 0.58 -2.8
610,325 - PFR28_00569 0.58 -0.9
610,325 - PFR28_00569 0.58 -3.8
610,325 - PFR28_00569 0.58 -1.1
610,325 - PFR28_00569 0.58 -3.2
610,325 - PFR28_00569 0.58 -3.0
610,325 - PFR28_00569 0.58 +1.4
610,325 - PFR28_00569 0.58 -2.0
610,325 - PFR28_00569 0.58 -3.5
610,325 - PFR28_00569 0.58 -3.7
610,325 - PFR28_00569 0.58 -1.4
610,325 - PFR28_00569 0.58 -0.9
610,325 - PFR28_00569 0.58 -3.1
610,325 - PFR28_00569 0.58 -1.0
610,325 - PFR28_00569 0.58 -2.3

Or see this region's nucleotide sequence