Strain Fitness in Erwinia amylovora T8 around OLJFJH_10615

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_10605 and OLJFJH_10610 overlap by 4 nucleotidesOLJFJH_10610 and OLJFJH_10615 are separated by 140 nucleotidesOLJFJH_10615 and OLJFJH_10620 are separated by 297 nucleotides OLJFJH_10605: OLJFJH_10605 - DnaA inactivator Hda, at 2,195,993 to 2,196,700 _10605 OLJFJH_10610: OLJFJH_10610 - hypothetical protein, at 2,196,697 to 2,196,888 _10610 OLJFJH_10615: OLJFJH_10615 - Beta-barrel assembly-enhancing protease, at 2,197,029 to 2,198,495 _10615 OLJFJH_10620: OLJFJH_10620 - diguanylate cyclase, at 2,198,793 to 2,200,406 _10620 Position (kb) 2197 2198 2199Strain fitness (log2 ratio) -1 0 1 2 3at 2196.842 kb on + strand, within OLJFJH_10610at 2196.843 kb on - strand, within OLJFJH_10610at 2196.843 kb on - strand, within OLJFJH_10610at 2196.843 kb on - strand, within OLJFJH_10610at 2196.843 kb on - strand, within OLJFJH_10610at 2196.843 kb on - strand, within OLJFJH_10610at 2196.843 kb on - strand, within OLJFJH_10610at 2196.998 kb on + strandat 2197.006 kb on + strandat 2197.006 kb on + strandat 2197.081 kb on - strandat 2197.287 kb on - strand, within OLJFJH_10615at 2197.287 kb on - strand, within OLJFJH_10615at 2197.295 kb on - strand, within OLJFJH_10615at 2197.336 kb on + strand, within OLJFJH_10615at 2197.337 kb on - strand, within OLJFJH_10615at 2197.359 kb on + strand, within OLJFJH_10615at 2197.506 kb on - strand, within OLJFJH_10615at 2197.620 kb on + strand, within OLJFJH_10615at 2197.621 kb on - strand, within OLJFJH_10615at 2197.672 kb on + strand, within OLJFJH_10615at 2197.672 kb on + strand, within OLJFJH_10615at 2197.672 kb on + strand, within OLJFJH_10615at 2197.672 kb on + strand, within OLJFJH_10615at 2197.672 kb on + strand, within OLJFJH_10615at 2197.672 kb on + strand, within OLJFJH_10615at 2197.673 kb on - strand, within OLJFJH_10615at 2197.673 kb on - strand, within OLJFJH_10615at 2197.673 kb on - strand, within OLJFJH_10615at 2197.673 kb on - strand, within OLJFJH_10615at 2197.673 kb on - strand, within OLJFJH_10615at 2197.673 kb on - strand, within OLJFJH_10615at 2197.673 kb on - strand, within OLJFJH_10615at 2197.673 kb on - strand, within OLJFJH_10615at 2197.673 kb on - strand, within OLJFJH_10615at 2197.673 kb on - strand, within OLJFJH_10615at 2197.673 kb on - strand, within OLJFJH_10615at 2197.784 kb on + strand, within OLJFJH_10615at 2198.155 kb on - strand, within OLJFJH_10615at 2198.155 kb on - strand, within OLJFJH_10615at 2198.155 kb on - strand, within OLJFJH_10615at 2198.184 kb on + strand, within OLJFJH_10615at 2198.329 kb on + strand, within OLJFJH_10615at 2198.329 kb on + strand, within OLJFJH_10615at 2198.370 kb on - strandat 2198.431 kb on - strandat 2198.495 kb on + strandat 2198.496 kb on - strandat 2198.496 kb on - strandat 2198.496 kb on - strandat 2198.580 kb on - strandat 2198.580 kb on - strandat 2198.622 kb on + strandat 2198.623 kb on - strandat 2198.623 kb on - strandat 2198.623 kb on - strandat 2198.886 kb on + strandat 2198.887 kb on - strandat 2198.917 kb on + strandat 2198.918 kb on - strandat 2198.927 kb on + strandat 2198.949 kb on + strandat 2198.949 kb on + strandat 2198.949 kb on + strandat 2199.007 kb on + strand, within OLJFJH_10620at 2199.042 kb on - strand, within OLJFJH_10620at 2199.042 kb on - strand, within OLJFJH_10620at 2199.070 kb on + strand, within OLJFJH_10620at 2199.070 kb on + strand, within OLJFJH_10620at 2199.071 kb on - strand, within OLJFJH_10620at 2199.071 kb on - strand, within OLJFJH_10620at 2199.102 kb on - strand, within OLJFJH_10620at 2199.316 kb on - strand, within OLJFJH_10620at 2199.316 kb on - strand, within OLJFJH_10620at 2199.316 kb on - strand, within OLJFJH_10620at 2199.333 kb on + strand, within OLJFJH_10620at 2199.350 kb on + strand, within OLJFJH_10620at 2199.351 kb on - strand, within OLJFJH_10620at 2199.351 kb on - strand, within OLJFJH_10620at 2199.351 kb on - strand, within OLJFJH_10620at 2199.433 kb on - strand, within OLJFJH_10620at 2199.441 kb on + strand, within OLJFJH_10620

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-7
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2,196,842 + OLJFJH_10610 0.76 +2.1
2,196,843 - OLJFJH_10610 0.76 +0.4
2,196,843 - OLJFJH_10610 0.76 -0.9
2,196,843 - OLJFJH_10610 0.76 -1.1
2,196,843 - OLJFJH_10610 0.76 +1.0
2,196,843 - OLJFJH_10610 0.76 -0.8
2,196,843 - OLJFJH_10610 0.76 -1.0
2,196,998 + -0.4
2,197,006 + +0.3
2,197,006 + +1.1
2,197,081 - -0.6
2,197,287 - OLJFJH_10615 0.18 +0.5
2,197,287 - OLJFJH_10615 0.18 +0.0
2,197,295 - OLJFJH_10615 0.18 -0.6
2,197,336 + OLJFJH_10615 0.21 +0.1
2,197,337 - OLJFJH_10615 0.21 +1.7
2,197,359 + OLJFJH_10615 0.22 +0.5
2,197,506 - OLJFJH_10615 0.33 -0.3
2,197,620 + OLJFJH_10615 0.40 -0.6
2,197,621 - OLJFJH_10615 0.40 +1.9
2,197,672 + OLJFJH_10615 0.44 +0.8
2,197,672 + OLJFJH_10615 0.44 -0.2
2,197,672 + OLJFJH_10615 0.44 +0.1
2,197,672 + OLJFJH_10615 0.44 +0.3
2,197,672 + OLJFJH_10615 0.44 +0.1
2,197,672 + OLJFJH_10615 0.44 -0.5
2,197,673 - OLJFJH_10615 0.44 +0.9
2,197,673 - OLJFJH_10615 0.44 -1.4
2,197,673 - OLJFJH_10615 0.44 +0.3
2,197,673 - OLJFJH_10615 0.44 -1.3
2,197,673 - OLJFJH_10615 0.44 -0.8
2,197,673 - OLJFJH_10615 0.44 +1.5
2,197,673 - OLJFJH_10615 0.44 -0.0
2,197,673 - OLJFJH_10615 0.44 -0.5
2,197,673 - OLJFJH_10615 0.44 +0.2
2,197,673 - OLJFJH_10615 0.44 +0.9
2,197,673 - OLJFJH_10615 0.44 +1.1
2,197,784 + OLJFJH_10615 0.51 -0.4
2,198,155 - OLJFJH_10615 0.77 -1.0
2,198,155 - OLJFJH_10615 0.77 +0.5
2,198,155 - OLJFJH_10615 0.77 +0.2
2,198,184 + OLJFJH_10615 0.79 +1.2
2,198,329 + OLJFJH_10615 0.89 +0.2
2,198,329 + OLJFJH_10615 0.89 +0.5
2,198,370 - -0.6
2,198,431 - -0.1
2,198,495 + +0.3
2,198,496 - -0.5
2,198,496 - +0.3
2,198,496 - +0.3
2,198,580 - -0.4
2,198,580 - +1.3
2,198,622 + -0.2
2,198,623 - +1.3
2,198,623 - -0.9
2,198,623 - +0.6
2,198,886 + +1.0
2,198,887 - +0.7
2,198,917 + +1.9
2,198,918 - -0.3
2,198,927 + +3.6
2,198,949 + -0.2
2,198,949 + -0.1
2,198,949 + +1.2
2,199,007 + OLJFJH_10620 0.13 -0.1
2,199,042 - OLJFJH_10620 0.15 -0.5
2,199,042 - OLJFJH_10620 0.15 -0.3
2,199,070 + OLJFJH_10620 0.17 -0.9
2,199,070 + OLJFJH_10620 0.17 +0.0
2,199,071 - OLJFJH_10620 0.17 -0.3
2,199,071 - OLJFJH_10620 0.17 +1.0
2,199,102 - OLJFJH_10620 0.19 +0.4
2,199,316 - OLJFJH_10620 0.32 +0.4
2,199,316 - OLJFJH_10620 0.32 +0.3
2,199,316 - OLJFJH_10620 0.32 +0.5
2,199,333 + OLJFJH_10620 0.33 -0.5
2,199,350 + OLJFJH_10620 0.35 -1.0
2,199,351 - OLJFJH_10620 0.35 +0.4
2,199,351 - OLJFJH_10620 0.35 -0.1
2,199,351 - OLJFJH_10620 0.35 -0.1
2,199,433 - OLJFJH_10620 0.40 +1.7
2,199,441 + OLJFJH_10620 0.40 +1.2

Or see this region's nucleotide sequence