Strain Fitness in Pseudomonas sp. RS175 around PFR28_04840

Experiment: D-Trehalose (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose (C) 5 mM
5,530,398	+		PFR28_04838	0.38	+0.3
5,530,398	+		PFR28_04838	0.38	-0.7
5,530,399	-		PFR28_04838	0.38	-0.0
5,530,399	-		PFR28_04838	0.38	-1.5
5,530,478	-		PFR28_04838	0.48	-2.1
5,530,498	+		PFR28_04838	0.50	+0.2
5,530,498	+		PFR28_04838	0.50	-2.2
5,530,498	+		PFR28_04838	0.50	+0.7
5,530,499	-		PFR28_04838	0.50	-0.7
5,530,499	-		PFR28_04838	0.50	-0.5
5,530,499	-		PFR28_04838	0.50	+0.7
5,530,499	-		PFR28_04838	0.50	-0.1
5,530,499	-		PFR28_04838	0.50	+0.6
5,530,499	-		PFR28_04838	0.50	+0.2
5,530,512	+		PFR28_04838	0.52	+1.2
5,530,512	+		PFR28_04838	0.52	-0.0
5,530,513	-		PFR28_04838	0.52	+0.3
5,530,513	-		PFR28_04838	0.52	+0.5
5,530,513	-		PFR28_04838	0.52	-0.8
5,530,513	-		PFR28_04838	0.52	-2.1
5,530,513	-		PFR28_04838	0.52	+0.1
5,530,513	-		PFR28_04838	0.52	+0.8
5,530,561	+		PFR28_04838	0.58	+1.3
5,530,562	-		PFR28_04838	0.58	-0.7
5,530,562	-		PFR28_04838	0.58	-1.0
5,530,562	-		PFR28_04838	0.58	-0.9
5,530,562	-		PFR28_04838	0.58	+0.8
5,530,704	+		PFR28_04838	0.75	+0.6
5,530,778	-		PFR28_04838	0.83	+0.7
5,530,852	+				+1.3
5,530,894	+				-0.9
5,530,894	+				+1.3
5,530,895	-				+0.7
5,530,940	+		PFR28_04839	0.16	+0.5
5,531,015	-		PFR28_04839	0.35	-1.9
5,531,048	+		PFR28_04839	0.43	-0.2
5,531,049	-		PFR28_04839	0.44	+0.7
5,531,151	-		PFR28_04839	0.69	-0.6
5,531,151	-		PFR28_04839	0.69	+1.7
5,531,209	+		PFR28_04839	0.84	+1.4
5,531,210	-		PFR28_04839	0.84	-2.8
5,531,210	-		PFR28_04839	0.84	-1.1
5,531,210	-		PFR28_04839	0.84	+0.6
5,531,223	-		PFR28_04839	0.88	-1.2
5,531,248	+				-0.2
5,531,248	+				-0.9
5,531,248	+				+0.5
5,531,248	+				-1.3
5,531,248	+				+1.3
5,531,249	-				-0.1
5,531,249	-				-0.4
5,531,249	-				+0.2
5,531,745	+		PFR28_04840	0.59	-1.0
5,531,746	-		PFR28_04840	0.59	-0.3
5,531,746	-		PFR28_04840	0.59	-0.2
5,531,809	+		PFR28_04840	0.69	-0.4
5,531,938	+		PFR28_04840	0.88	-1.4
5,531,938	+		PFR28_04840	0.88	-0.4
5,531,939	-		PFR28_04840	0.88	-1.9
5,531,939	-		PFR28_04840	0.88	-3.0
5,531,939	-		PFR28_04840	0.88	-1.8
5,531,942	+		PFR28_04840	0.89	-0.7
5,531,942	+		PFR28_04840	0.89	+0.1
5,531,942	+		PFR28_04840	0.89	+0.0
5,531,942	+		PFR28_04840	0.89	+0.3
5,531,942	+		PFR28_04840	0.89	-0.9
5,531,942	+		PFR28_04840	0.89	+0.1
5,531,943	-		PFR28_04840	0.89	-2.1
5,531,998	+				+0.2
5,531,998	+				-1.1
5,531,998	+				-0.5
5,531,998	+				+0.6
5,531,998	+				+0.7
5,531,999	-				-0.5
5,531,999	-				+0.9
5,531,999	-				-0.5
5,531,999	-				+0.1
5,531,999	-				+0.6
5,531,999	-				-1.2
5,531,999	-				+0.5
5,531,999	-				+0.1
5,532,010	+				-1.0
5,532,010	+				-0.2
5,532,010	+				-1.7
5,532,010	+				+0.8
5,532,011	-				-0.7
5,532,011	-				-1.0
5,532,011	-				-0.2
5,532,011	-				+1.4
5,532,110	+				-0.6
5,532,110	+				-0.4
5,532,110	+				-0.0
5,532,110	+				-1.0
5,532,111	-				-0.2
5,532,111	-				-0.2
5,532,111	-				-0.4
5,532,111	-				+0.1
5,532,111	-				-0.7
5,532,111	-				+0.3
5,532,137	+				-0.1
5,532,137	+				+0.2
5,532,137	+				+0.3
5,532,137	+				+0.4
5,532,138	-				+0.3
5,532,147	-				+0.4
5,532,147	-				-1.6
5,532,167	-				+1.3
5,532,167	-				+1.1
5,532,197	+		PFR28_04841	0.11	-1.9
5,532,197	+		PFR28_04841	0.11	+0.1
5,532,197	+		PFR28_04841	0.11	-1.6
5,532,197	+		PFR28_04841	0.11	+0.4
5,532,198	-		PFR28_04841	0.11	+0.4
5,532,367	+		PFR28_04841	0.23	-0.6
5,532,411	+		PFR28_04841	0.26	+2.0
5,532,411	+		PFR28_04841	0.26	+0.9
5,532,412	-		PFR28_04841	0.26	-1.7
5,532,422	+		PFR28_04841	0.27	+0.1
5,532,422	+		PFR28_04841	0.27	+0.9
5,532,422	+		PFR28_04841	0.27	-0.0
5,532,423	-		PFR28_04841	0.27	+0.4
5,532,423	-		PFR28_04841	0.27	+1.2
5,532,423	-		PFR28_04841	0.27	-0.8
5,532,423	-		PFR28_04841	0.27	-0.9
5,532,423	-		PFR28_04841	0.27	+0.4
5,532,423	-		PFR28_04841	0.27	+1.0
5,532,455	+		PFR28_04841	0.29	+0.2
5,532,455	+		PFR28_04841	0.29	+0.5
5,532,455	+		PFR28_04841	0.29	-0.1
5,532,456	-		PFR28_04841	0.29	-0.3
5,532,456	-		PFR28_04841	0.29	+2.6
5,532,456	-		PFR28_04841	0.29	-0.5
5,532,605	+		PFR28_04841	0.40	-0.0
5,532,605	+		PFR28_04841	0.40	-1.4
5,532,605	+		PFR28_04841	0.40	+0.6
5,532,605	+		PFR28_04841	0.40	+0.9
5,532,606	-		PFR28_04841	0.40	-0.8
5,532,606	-		PFR28_04841	0.40	-0.5
5,532,637	+		PFR28_04841	0.42	-0.6