Strain Fitness in Pseudomonas sp. RS175 around PFR28_04558

Experiment: D-Trehalose (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose (C) 5 mM
5,205,512	+		PFR28_04557	0.34	+0.0
5,205,513	-		PFR28_04557	0.34	-1.0
5,205,611	+		PFR28_04557	0.42	-0.5
5,205,611	+		PFR28_04557	0.42	-1.6
5,205,611	+		PFR28_04557	0.42	-0.5
5,205,612	-		PFR28_04557	0.42	+0.9
5,205,779	+		PFR28_04557	0.55	+1.5
5,205,780	-		PFR28_04557	0.56	-2.3
5,205,780	-		PFR28_04557	0.56	+0.1
5,205,780	-		PFR28_04557	0.56	-1.6
5,205,782	+		PFR28_04557	0.56	-3.4
5,205,782	+		PFR28_04557	0.56	-2.5
5,205,782	+		PFR28_04557	0.56	-3.3
5,205,782	+		PFR28_04557	0.56	-2.5
5,205,782	+		PFR28_04557	0.56	+0.7
5,205,783	-		PFR28_04557	0.56	-3.0
5,205,783	-		PFR28_04557	0.56	-2.8
5,205,783	-		PFR28_04557	0.56	-0.6
5,205,783	-		PFR28_04557	0.56	-2.1
5,205,783	-		PFR28_04557	0.56	-0.8
5,205,783	-		PFR28_04557	0.56	-0.4
5,205,783	-		PFR28_04557	0.56	-2.9
5,205,853	+		PFR28_04557	0.61	-1.2
5,205,854	-		PFR28_04557	0.61	-0.6
5,205,854	-		PFR28_04557	0.61	-0.7
5,206,037	+		PFR28_04557	0.76	-0.5
5,206,037	+		PFR28_04557	0.76	-3.6
5,206,037	+		PFR28_04557	0.76	-0.8
5,206,037	+		PFR28_04557	0.76	-2.9
5,206,037	+		PFR28_04557	0.76	-0.3
5,206,037	+		PFR28_04557	0.76	-1.2
5,206,037	+		PFR28_04557	0.76	-3.3
5,206,037	+		PFR28_04557	0.76	-3.3
5,206,037	+		PFR28_04557	0.76	-2.1
5,206,038	-		PFR28_04557	0.76	-1.2
5,206,038	-		PFR28_04557	0.76	-3.6
5,206,038	-		PFR28_04557	0.76	-2.0
5,206,038	-		PFR28_04557	0.76	-0.8
5,206,038	-		PFR28_04557	0.76	+0.0
5,206,038	-		PFR28_04557	0.76	+0.1
5,206,038	-		PFR28_04557	0.76	-2.7
5,206,048	+		PFR28_04557	0.77	-0.2
5,206,048	+		PFR28_04557	0.77	-2.4
5,206,049	-		PFR28_04557	0.77	-0.8
5,206,142	+		PFR28_04557	0.84	-1.0
5,206,142	+		PFR28_04557	0.84	-3.2
5,206,142	+		PFR28_04557	0.84	-0.4
5,206,142	+		PFR28_04557	0.84	-0.7
5,206,143	-		PFR28_04557	0.84	-2.5
5,206,143	-		PFR28_04557	0.84	-1.7
5,206,143	-		PFR28_04557	0.84	-1.6
5,206,143	-		PFR28_04557	0.84	-0.4
5,206,366	+				-0.0
5,206,366	+				-3.2
5,206,366	+				-1.2
5,206,366	+				-3.3
5,206,366	+				+0.0
5,206,366	+				-1.0
5,206,366	+				-0.7
5,206,366	+				-1.2
5,206,366	+				-1.4
5,206,366	+				-0.7
5,206,366	+				-2.2
5,206,366	+				-0.4
5,206,366	+				-1.5
5,206,366	+				-2.0
5,206,366	+				-0.5
5,206,366	+				-2.2
5,206,366	+				-2.4
5,206,366	+				-2.0
5,206,366	+				-0.9
5,206,366	+				-0.3
5,206,366	+				-4.4
5,206,366	+				+0.2
5,206,366	+				-1.6
5,206,366	+				-1.0
5,206,367	-				-2.1
5,206,367	-				-0.7
5,206,367	-				-0.9
5,206,367	-				-3.5
5,206,367	-				-1.1
5,206,367	-				-0.9
5,206,367	-				+0.7
5,206,367	-				-1.2
5,206,367	-				-0.3
5,206,367	-				-0.7
5,206,367	-				-2.1
5,206,367	-				-0.4
5,206,367	-				+1.1
5,206,367	-				+0.3
5,206,367	-				-0.7
5,206,367	-				-1.4
5,206,367	-				-2.2
5,206,367	-				-0.2
5,206,367	-				-0.7
5,206,367	-				+0.7
5,206,367	-				+0.9
5,206,367	-				-0.7
5,206,367	-				-2.4
5,206,367	-				-0.1
5,206,367	-				-0.8
5,206,367	-				-0.9
5,206,367	-				-0.7
5,206,372	+				-1.7
5,206,372	+				-0.4
5,206,372	+				-1.4
5,206,372	+				-2.1
5,206,372	+				-0.6
5,206,372	+				-0.3
5,206,372	+				-0.9
5,206,373	-				-1.0
5,206,373	-				-1.3
5,206,373	-				+0.5
5,206,373	-				-1.2
5,206,373	-				-2.2
5,206,412	+				-1.0
5,206,412	+				-1.1
5,206,412	+				-0.7
5,206,412	+				-1.0
5,206,413	-				-0.7
5,206,413	-				-1.2
5,206,413	-				-1.7
5,206,413	-				-2.0
5,206,413	-				-4.4
5,206,416	+				-1.1
5,206,416	+				-1.1
5,206,416	+				-0.7
5,206,416	+				-0.8
5,206,417	-				-0.8
5,206,417	-				-0.3
5,206,417	-				-1.5
5,206,417	-				-1.1
5,206,492	+		PFR28_04558	0.11	-0.7
5,206,492	+		PFR28_04558	0.11	+0.3
5,206,492	+		PFR28_04558	0.11	-0.7
5,206,493	-		PFR28_04558	0.11	-0.8
5,206,493	-		PFR28_04558	0.11	+0.1
5,206,493	-		PFR28_04558	0.11	-0.4
5,206,651	+		PFR28_04558	0.23	-1.5
5,206,652	-		PFR28_04558	0.23	-1.5
5,206,725	+		PFR28_04558	0.28	-0.9
5,206,725	+		PFR28_04558	0.28	+0.4
5,206,725	+		PFR28_04558	0.28	-0.8
5,206,725	+		PFR28_04558	0.28	-0.1
5,206,725	+		PFR28_04558	0.28	-1.8
5,206,726	-		PFR28_04558	0.28	+0.3
5,206,726	-		PFR28_04558	0.28	-0.0
5,206,782	-		PFR28_04558	0.33	-1.6
5,206,867	+		PFR28_04558	0.39	+0.1
5,206,867	+		PFR28_04558	0.39	-0.8
5,206,867	+		PFR28_04558	0.39	-1.9
5,206,867	+		PFR28_04558	0.39	+1.6
5,206,867	+		PFR28_04558	0.39	+0.4
5,206,867	+		PFR28_04558	0.39	-2.5
5,206,867	+		PFR28_04558	0.39	-1.3
5,206,867	+		PFR28_04558	0.39	-2.3
5,206,867	+		PFR28_04558	0.39	+0.1
5,206,867	+		PFR28_04558	0.39	-1.2
5,206,867	+		PFR28_04558	0.39	-0.4
5,206,868	-		PFR28_04558	0.39	-0.4
5,206,868	-		PFR28_04558	0.39	+0.7
5,206,868	-		PFR28_04558	0.39	-0.6
5,206,868	-		PFR28_04558	0.39	-0.7
5,206,966	+		PFR28_04558	0.46	-0.8
5,206,966	+		PFR28_04558	0.46	+0.0
5,206,966	+		PFR28_04558	0.46	-0.6
5,206,966	+		PFR28_04558	0.46	-0.5
5,206,967	-		PFR28_04558	0.46	-2.7
5,206,967	-		PFR28_04558	0.46	-2.5
5,207,000	+		PFR28_04558	0.49	-3.5
5,207,001	-		PFR28_04558	0.49	-1.4
5,207,120	+		PFR28_04558	0.57	+0.6
5,207,120	+		PFR28_04558	0.57	-1.7
5,207,120	+		PFR28_04558	0.57	-0.9
5,207,121	-		PFR28_04558	0.57	-0.3
5,207,121	-		PFR28_04558	0.57	-1.4
5,207,194	+		PFR28_04558	0.63	+0.5
5,207,195	-		PFR28_04558	0.63	-1.2
5,207,195	-		PFR28_04558	0.63	-1.9
5,207,371	+		PFR28_04558	0.76	-1.0
5,207,371	+		PFR28_04558	0.76	-0.3
5,207,371	+		PFR28_04558	0.76	+0.4
5,207,371	+		PFR28_04558	0.76	-1.0
5,207,371	+		PFR28_04558	0.76	+0.9
5,207,372	-		PFR28_04558	0.76	-2.1
5,207,372	-		PFR28_04558	0.76	-0.4
5,207,405	-		PFR28_04558	0.78	-0.9
5,207,405	-		PFR28_04558	0.78	-2.8
5,207,405	-		PFR28_04558	0.78	-1.0
5,207,405	-		PFR28_04558	0.78	-0.7
5,207,512	+		PFR28_04558	0.86	+1.1
5,207,513	-		PFR28_04558	0.86	+0.1
5,207,513	-		PFR28_04558	0.86	-0.7
5,207,513	-		PFR28_04558	0.86	-0.1
5,207,513	-		PFR28_04558	0.86	-0.3
5,207,748	+				+1.3
5,207,748	+				-1.5
5,207,748	+				-1.3
5,207,748	+				-0.6
5,207,748	+				-0.4
5,207,748	+				-1.0
5,207,748	+				-0.7
5,207,749	-				-0.2
5,207,749	-				-2.0
5,207,749	-				-0.8
5,207,749	-				-0.8
5,207,749	-				-0.8
5,207,749	-				+0.6
5,207,749	-				-0.9
5,207,749	-				+0.4
5,207,964	+		PFR28_04559	0.24	-0.0
5,208,005	+		PFR28_04559	0.28	-2.2
5,208,043	-		PFR28_04559	0.31	+0.0
5,208,285	+		PFR28_04559	0.53	-0.7
5,208,292	+		PFR28_04559	0.53	-0.2
5,208,292	+		PFR28_04559	0.53	+0.9
5,208,292	+		PFR28_04559	0.53	-2.7
5,208,293	-		PFR28_04559	0.53	-0.6
5,208,293	-		PFR28_04559	0.53	-0.6
5,208,355	+		PFR28_04559	0.59	-2.2
5,208,356	-		PFR28_04559	0.59	+0.1
5,208,356	-		PFR28_04559	0.59	-0.6
5,208,391	+		PFR28_04559	0.62	-2.4
5,208,391	+		PFR28_04559	0.62	-3.0
5,208,391	+		PFR28_04559	0.62	-0.9
5,208,392	-		PFR28_04559	0.62	+0.0
5,208,392	-		PFR28_04559	0.62	-2.6
5,208,392	-		PFR28_04559	0.62	-0.0
5,208,392	-		PFR28_04559	0.62	-0.3
5,208,392	-		PFR28_04559	0.62	+0.7
5,208,392	-		PFR28_04559	0.62	-0.8
5,208,394	+		PFR28_04559	0.62	-1.9
5,208,394	+		PFR28_04559	0.62	-1.1
5,208,394	+		PFR28_04559	0.62	-0.8
5,208,394	+		PFR28_04559	0.62	-0.0
5,208,395	-		PFR28_04559	0.62	-3.3
5,208,395	-		PFR28_04559	0.62	-0.8
5,208,478	-		PFR28_04559	0.70	+0.6
5,208,505	+		PFR28_04559	0.72	-0.9
5,208,506	-		PFR28_04559	0.72	+0.1
5,208,506	-		PFR28_04559	0.72	-0.3
5,208,506	-		PFR28_04559	0.72	+1.4
5,208,543	+		PFR28_04559	0.75	-0.7
5,208,543	+		PFR28_04559	0.75	-0.4
5,208,543	+		PFR28_04559	0.75	-1.5
5,208,543	+		PFR28_04559	0.75	+0.5
5,208,543	+		PFR28_04559	0.75	-2.2
5,208,543	+		PFR28_04559	0.75	-0.7
5,208,544	-		PFR28_04559	0.75	+0.4
5,208,544	-		PFR28_04559	0.75	-2.7
5,208,590	-		PFR28_04559	0.79	-2.5
5,208,648	+		PFR28_04559	0.85	-1.4
5,208,648	+		PFR28_04559	0.85	-1.8
5,208,649	-		PFR28_04559	0.85	-1.4
5,208,649	-		PFR28_04559	0.85	-2.4