Strain Fitness in Pseudomonas sp. RS175 around PFR28_02053

Experiment: D-Trehalose (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose (C) 5 mM
2,322,026	+				+2.9
2,322,075	+				+1.6
2,322,075	+				-0.3
2,322,076	-				+0.2
2,322,076	-				+0.1
2,322,076	-				+0.1
2,322,076	-				+1.5
2,322,076	-				+1.2
2,322,076	-				-0.4
2,322,176	+		PFR28_02052	0.11	-1.2
2,322,176	+		PFR28_02052	0.11	-0.7
2,322,176	+		PFR28_02052	0.11	+0.5
2,322,177	-		PFR28_02052	0.11	-0.6
2,322,177	-		PFR28_02052	0.11	+0.8
2,322,199	+		PFR28_02052	0.14	-0.3
2,322,200	-		PFR28_02052	0.14	-1.6
2,322,432	+		PFR28_02052	0.44	-1.5
2,322,432	+		PFR28_02052	0.44	-1.3
2,322,507	-		PFR28_02052	0.53	-1.9
2,322,543	+		PFR28_02052	0.58	+1.8
2,322,560	+		PFR28_02052	0.60	+0.5
2,322,560	+		PFR28_02052	0.60	+0.7
2,322,560	+		PFR28_02052	0.60	+0.7
2,322,629	+		PFR28_02052	0.69	-0.7
2,322,693	+		PFR28_02052	0.78	+0.4
2,322,694	-		PFR28_02052	0.78	+0.0
2,322,946	+				-1.7
2,322,946	+				+0.1
2,322,946	+				+0.0
2,322,947	-				+0.0
2,322,947	-				+1.4
2,322,947	-				+1.9
2,322,947	-				-0.9
2,322,959	+				+1.7
2,322,959	+				+0.3
2,322,959	+				-1.0
2,322,959	+				+0.8
2,322,960	-				-1.2
2,322,960	-				+0.0
2,322,960	-				-0.6
2,323,020	-				+1.0
2,323,020	-				-1.7
2,323,020	-				-1.4
2,323,025	+				-0.3
2,323,025	+				-0.4
2,323,052	-				-0.4
2,323,052	-				-0.8
2,323,052	-				-0.2
2,323,283	-		PFR28_02053	0.23	-1.0
2,323,300	+		PFR28_02053	0.24	+0.1
2,323,301	-		PFR28_02053	0.24	-0.2
2,323,301	-		PFR28_02053	0.24	-1.0
2,323,303	+		PFR28_02053	0.24	-1.2
2,323,537	+		PFR28_02053	0.39	-0.7
2,323,538	-		PFR28_02053	0.39	-2.1
2,323,546	+		PFR28_02053	0.40	-0.6
2,323,852	+		PFR28_02053	0.59	+0.0
2,323,900	+		PFR28_02053	0.62	-0.7
2,323,901	-		PFR28_02053	0.62	-1.0
2,323,901	-		PFR28_02053	0.62	+0.4
2,323,901	-		PFR28_02053	0.62	+0.1
2,324,269	+		PFR28_02053	0.85	-2.7
2,324,404	-				+1.1
2,324,467	-				-0.9
2,324,467	-				-0.3
2,324,511	+				+0.5
2,324,512	-				-0.1
2,324,630	+		PFR28_02054	0.11	+2.3
2,324,631	-		PFR28_02054	0.11	-0.4
2,324,936	+		PFR28_02054	0.39	+0.3
2,324,937	-		PFR28_02054	0.39	+0.2
2,324,976	+		PFR28_02054	0.42	+0.2
2,325,012	-		PFR28_02054	0.46	-1.1
2,325,131	+		PFR28_02054	0.56	-1.2
2,325,131	+		PFR28_02054	0.56	+0.9
2,325,131	+		PFR28_02054	0.56	-0.2
2,325,131	+		PFR28_02054	0.56	+0.8
2,325,131	+		PFR28_02054	0.56	-0.2
2,325,131	+		PFR28_02054	0.56	+0.4
2,325,132	-		PFR28_02054	0.56	-0.6
2,325,132	-		PFR28_02054	0.56	+0.5
2,325,137	+		PFR28_02054	0.57	+1.3
2,325,137	+		PFR28_02054	0.57	-0.5
2,325,137	+		PFR28_02054	0.57	-1.1
2,325,137	+		PFR28_02054	0.57	-1.2
2,325,137	+		PFR28_02054	0.57	+0.3
2,325,137	+		PFR28_02054	0.57	-0.1
2,325,137	+		PFR28_02054	0.57	+0.4
2,325,138	-		PFR28_02054	0.57	-0.4
2,325,138	-		PFR28_02054	0.57	+0.8
2,325,138	-		PFR28_02054	0.57	+0.9
2,325,138	-		PFR28_02054	0.57	+0.3
2,325,138	-		PFR28_02054	0.57	-0.2
2,325,138	-		PFR28_02054	0.57	-0.3
2,325,138	-		PFR28_02054	0.57	+0.3
2,325,138	-		PFR28_02054	0.57	-1.7
2,325,321	+		PFR28_02054	0.73	-0.2
2,325,321	+		PFR28_02054	0.73	+0.1
2,325,321	+		PFR28_02054	0.73	-0.3
2,325,321	+		PFR28_02054	0.73	-0.2
2,325,321	+		PFR28_02054	0.73	+0.4
2,325,321	+		PFR28_02054	0.73	+0.5
2,325,321	+		PFR28_02054	0.73	-2.5
2,325,321	+		PFR28_02054	0.73	-0.0
2,325,321	+		PFR28_02054	0.73	-0.3
2,325,321	+		PFR28_02054	0.73	-1.2
2,325,321	+		PFR28_02054	0.73	-1.7
2,325,321	+		PFR28_02054	0.73	+1.0
2,325,322	-		PFR28_02054	0.73	+0.0
2,325,322	-		PFR28_02054	0.73	+0.4
2,325,322	-		PFR28_02054	0.73	-0.4
2,325,322	-		PFR28_02054	0.73	-0.3
2,325,322	-		PFR28_02054	0.73	-0.7
2,325,322	-		PFR28_02054	0.73	-0.2
2,325,322	-		PFR28_02054	0.73	+0.1
2,325,322	-		PFR28_02054	0.73	-0.1
2,325,322	-		PFR28_02054	0.73	+0.4
2,325,322	-		PFR28_02054	0.73	+0.6
2,325,322	-		PFR28_02054	0.73	-1.8
2,325,322	-		PFR28_02054	0.73	-0.6
2,325,418	-		PFR28_02054	0.82	-0.4
2,325,457	+		PFR28_02054	0.86	+1.5
2,325,457	+		PFR28_02054	0.86	-0.2
2,325,458	-		PFR28_02054	0.86	-0.7
2,325,458	-		PFR28_02054	0.86	-1.0