Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_09290 and OLJFJH_09295 are separated by 270 nucleotides OLJFJH_09295 and OLJFJH_09300 are separated by 287 nucleotides
OLJFJH_09290: OLJFJH_09290 - cysteine protease, at 1,924,180 to 1,924,989
_09290
OLJFJH_09295: OLJFJH_09295 - 6-carboxytetrahydropterin synthase QueD, at 1,925,260 to 1,925,619
_09295
OLJFJH_09300: OLJFJH_09300 - NADPH-dependent assimilatory sulfite reductase flavoprotein subunit, at 1,925,907 to 1,927,709
_09300
Position (kb) 1925
1926 Strain fitness (log2 ratio) -1
0
1
2
3 at 1924.410 kb on + strand, within OLJFJH_09290 at 1924.411 kb on - strand, within OLJFJH_09290 at 1924.422 kb on + strand, within OLJFJH_09290 at 1924.423 kb on - strand, within OLJFJH_09290 at 1924.456 kb on + strand, within OLJFJH_09290 at 1924.546 kb on - strand, within OLJFJH_09290 at 1924.635 kb on - strand, within OLJFJH_09290 at 1924.668 kb on + strand, within OLJFJH_09290 at 1924.669 kb on - strand, within OLJFJH_09290 at 1924.669 kb on - strand, within OLJFJH_09290 at 1924.746 kb on + strand, within OLJFJH_09290 at 1924.746 kb on + strand, within OLJFJH_09290 at 1924.746 kb on + strand, within OLJFJH_09290 at 1924.746 kb on + strand, within OLJFJH_09290 at 1924.747 kb on - strand, within OLJFJH_09290 at 1924.947 kb on - strand at 1924.961 kb on + strand at 1924.997 kb on - strand at 1924.999 kb on + strand at 1925.012 kb on + strand at 1925.085 kb on - strand at 1925.085 kb on - strand at 1925.120 kb on + strand at 1925.121 kb on - strand at 1925.124 kb on + strand at 1925.271 kb on - strand at 1925.299 kb on + strand, within OLJFJH_09295 at 1925.314 kb on + strand, within OLJFJH_09295 at 1925.315 kb on - strand, within OLJFJH_09295 at 1925.405 kb on + strand, within OLJFJH_09295 at 1925.405 kb on + strand, within OLJFJH_09295 at 1925.405 kb on + strand, within OLJFJH_09295 at 1925.406 kb on - strand, within OLJFJH_09295 at 1925.406 kb on - strand, within OLJFJH_09295 at 1925.406 kb on - strand, within OLJFJH_09295 at 1925.406 kb on - strand, within OLJFJH_09295 at 1925.408 kb on + strand, within OLJFJH_09295 at 1925.409 kb on - strand, within OLJFJH_09295 at 1925.409 kb on - strand, within OLJFJH_09295 at 1925.488 kb on + strand, within OLJFJH_09295 at 1925.488 kb on + strand, within OLJFJH_09295 at 1925.488 kb on + strand, within OLJFJH_09295 at 1925.489 kb on - strand, within OLJFJH_09295 at 1925.605 kb on + strand at 1925.619 kb on + strand at 1925.619 kb on + strand at 1925.619 kb on + strand at 1925.719 kb on + strand at 1925.805 kb on + strand at 1925.825 kb on + strand at 1925.838 kb on + strand at 1925.842 kb on + strand at 1925.842 kb on + strand at 1925.842 kb on + strand at 1925.858 kb on + strand at 1925.859 kb on - strand at 1925.859 kb on - strand at 1925.877 kb on + strand at 1925.878 kb on - strand at 1925.966 kb on - strand at 1926.206 kb on + strand, within OLJFJH_09300 at 1926.207 kb on - strand, within OLJFJH_09300 at 1926.295 kb on + strand, within OLJFJH_09300 at 1926.295 kb on + strand, within OLJFJH_09300 at 1926.295 kb on + strand, within OLJFJH_09300 at 1926.296 kb on - strand, within OLJFJH_09300 at 1926.296 kb on - strand, within OLJFJH_09300 at 1926.299 kb on + strand, within OLJFJH_09300 at 1926.375 kb on + strand, within OLJFJH_09300 at 1926.375 kb on + strand, within OLJFJH_09300 at 1926.381 kb on + strand, within OLJFJH_09300 at 1926.381 kb on + strand, within OLJFJH_09300 at 1926.382 kb on - strand, within OLJFJH_09300
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-6 remove 1,924,410 + OLJFJH_09290 0.28 +0.6 1,924,411 - OLJFJH_09290 0.29 -0.3 1,924,422 + OLJFJH_09290 0.30 -0.6 1,924,423 - OLJFJH_09290 0.30 +0.7 1,924,456 + OLJFJH_09290 0.34 +0.8 1,924,546 - OLJFJH_09290 0.45 +1.7 1,924,635 - OLJFJH_09290 0.56 +3.7 1,924,668 + OLJFJH_09290 0.60 +1.6 1,924,669 - OLJFJH_09290 0.60 -0.2 1,924,669 - OLJFJH_09290 0.60 +1.0 1,924,746 + OLJFJH_09290 0.70 -0.1 1,924,746 + OLJFJH_09290 0.70 +0.1 1,924,746 + OLJFJH_09290 0.70 +0.4 1,924,746 + OLJFJH_09290 0.70 -0.1 1,924,747 - OLJFJH_09290 0.70 -1.1 1,924,947 - -0.3 1,924,961 + +0.2 1,924,997 - +0.0 1,924,999 + +0.2 1,925,012 + +1.1 1,925,085 - -0.4 1,925,085 - +0.1 1,925,120 + +1.7 1,925,121 - -1.3 1,925,124 + -0.3 1,925,271 - +0.2 1,925,299 + OLJFJH_09295 0.11 -0.3 1,925,314 + OLJFJH_09295 0.15 -0.7 1,925,315 - OLJFJH_09295 0.15 -1.1 1,925,405 + OLJFJH_09295 0.40 -1.0 1,925,405 + OLJFJH_09295 0.40 +0.3 1,925,405 + OLJFJH_09295 0.40 -0.9 1,925,406 - OLJFJH_09295 0.41 +1.3 1,925,406 - OLJFJH_09295 0.41 -0.4 1,925,406 - OLJFJH_09295 0.41 -0.1 1,925,406 - OLJFJH_09295 0.41 -1.4 1,925,408 + OLJFJH_09295 0.41 -0.3 1,925,409 - OLJFJH_09295 0.41 -0.5 1,925,409 - OLJFJH_09295 0.41 -1.4 1,925,488 + OLJFJH_09295 0.63 +0.1 1,925,488 + OLJFJH_09295 0.63 -0.0 1,925,488 + OLJFJH_09295 0.63 +0.3 1,925,489 - OLJFJH_09295 0.64 +0.1 1,925,605 + +1.7 1,925,619 + -0.3 1,925,619 + -0.3 1,925,619 + -0.7 1,925,719 + -0.2 1,925,805 + -0.2 1,925,825 + -1.5 1,925,838 + -1.5 1,925,842 + -0.2 1,925,842 + +0.5 1,925,842 + -0.1 1,925,858 + -0.0 1,925,859 - +0.3 1,925,859 - +0.4 1,925,877 + +0.4 1,925,878 - +0.6 1,925,966 - +1.2 1,926,206 + OLJFJH_09300 0.17 -0.5 1,926,207 - OLJFJH_09300 0.17 -1.1 1,926,295 + OLJFJH_09300 0.22 -1.1 1,926,295 + OLJFJH_09300 0.22 -0.7 1,926,295 + OLJFJH_09300 0.22 +0.7 1,926,296 - OLJFJH_09300 0.22 -1.1 1,926,296 - OLJFJH_09300 0.22 -0.3 1,926,299 + OLJFJH_09300 0.22 -0.3 1,926,375 + OLJFJH_09300 0.26 -0.2 1,926,375 + OLJFJH_09300 0.26 -0.0 1,926,381 + OLJFJH_09300 0.26 +0.4 1,926,381 + OLJFJH_09300 0.26 +0.8 1,926,382 - OLJFJH_09300 0.26 +2.6
Or see this region's nucleotide sequence