Strain Fitness in Erwinia amylovora T8 around OLJFJH_00705

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_00695 and OLJFJH_00700 are separated by 14 nucleotidesOLJFJH_00700 and OLJFJH_00705 are separated by 48 nucleotidesOLJFJH_00705 and OLJFJH_00710 are separated by 757 nucleotides OLJFJH_00695: OLJFJH_00695 - Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD, at 53,747 to 54,625 _00695 OLJFJH_00700: OLJFJH_00700 - Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC, at 54,640 to 55,434 _00700 OLJFJH_00705: OLJFJH_00705 - ferrichrome porin FhuA, at 55,483 to 57,699 _00705 OLJFJH_00710: OLJFJH_00710 - type II toxin-antitoxin system RelB/DinJ family antitoxin, at 58,457 to 58,684 _00710 Position (kb) 55 56 57 58Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 54.547 kb on - strandat 54.631 kb on + strandat 54.645 kb on - strandat 54.704 kb on + strandat 54.704 kb on + strandat 54.704 kb on + strandat 54.704 kb on + strandat 54.705 kb on - strandat 54.705 kb on - strandat 54.705 kb on - strandat 54.705 kb on - strandat 54.705 kb on - strandat 54.707 kb on - strandat 54.707 kb on - strandat 55.173 kb on - strand, within OLJFJH_00700at 55.173 kb on - strand, within OLJFJH_00700at 55.173 kb on - strand, within OLJFJH_00700at 55.303 kb on - strand, within OLJFJH_00700at 55.303 kb on - strand, within OLJFJH_00700at 55.357 kb on + strandat 55.565 kb on + strandat 55.594 kb on - strandat 55.662 kb on + strandat 55.662 kb on + strandat 55.662 kb on + strandat 55.662 kb on + strandat 55.663 kb on - strandat 55.710 kb on + strand, within OLJFJH_00705at 55.711 kb on - strand, within OLJFJH_00705at 55.713 kb on + strand, within OLJFJH_00705at 55.754 kb on + strand, within OLJFJH_00705at 55.755 kb on - strand, within OLJFJH_00705at 55.808 kb on + strand, within OLJFJH_00705at 55.809 kb on - strand, within OLJFJH_00705at 55.809 kb on - strand, within OLJFJH_00705at 55.809 kb on - strand, within OLJFJH_00705at 55.830 kb on + strand, within OLJFJH_00705at 55.831 kb on - strand, within OLJFJH_00705at 55.868 kb on + strand, within OLJFJH_00705at 55.868 kb on + strand, within OLJFJH_00705at 55.868 kb on + strand, within OLJFJH_00705at 55.868 kb on + strand, within OLJFJH_00705at 55.868 kb on + strand, within OLJFJH_00705at 55.872 kb on + strand, within OLJFJH_00705at 55.873 kb on - strand, within OLJFJH_00705at 55.898 kb on + strand, within OLJFJH_00705at 55.898 kb on + strand, within OLJFJH_00705at 55.898 kb on + strand, within OLJFJH_00705at 55.898 kb on + strand, within OLJFJH_00705at 55.898 kb on + strand, within OLJFJH_00705at 55.898 kb on + strand, within OLJFJH_00705at 55.899 kb on - strand, within OLJFJH_00705at 55.899 kb on - strand, within OLJFJH_00705at 55.899 kb on - strand, within OLJFJH_00705at 55.899 kb on - strand, within OLJFJH_00705at 56.105 kb on + strand, within OLJFJH_00705at 56.133 kb on + strand, within OLJFJH_00705at 56.134 kb on - strand, within OLJFJH_00705at 56.142 kb on + strand, within OLJFJH_00705at 56.360 kb on + strand, within OLJFJH_00705at 56.390 kb on + strand, within OLJFJH_00705at 56.397 kb on - strand, within OLJFJH_00705at 56.628 kb on + strand, within OLJFJH_00705at 56.654 kb on + strand, within OLJFJH_00705at 56.654 kb on + strand, within OLJFJH_00705at 56.655 kb on - strand, within OLJFJH_00705at 56.658 kb on + strand, within OLJFJH_00705at 56.659 kb on - strand, within OLJFJH_00705at 56.667 kb on - strand, within OLJFJH_00705at 56.876 kb on + strand, within OLJFJH_00705at 56.877 kb on - strand, within OLJFJH_00705at 56.904 kb on - strand, within OLJFJH_00705at 56.904 kb on - strand, within OLJFJH_00705at 56.904 kb on - strand, within OLJFJH_00705at 56.965 kb on - strand, within OLJFJH_00705at 57.030 kb on - strand, within OLJFJH_00705at 57.030 kb on - strand, within OLJFJH_00705at 57.106 kb on - strand, within OLJFJH_00705at 57.112 kb on + strand, within OLJFJH_00705at 57.112 kb on + strand, within OLJFJH_00705at 57.257 kb on + strand, within OLJFJH_00705at 57.257 kb on + strand, within OLJFJH_00705at 57.257 kb on + strand, within OLJFJH_00705at 57.257 kb on + strand, within OLJFJH_00705at 57.272 kb on - strand, within OLJFJH_00705at 57.290 kb on + strand, within OLJFJH_00705at 57.290 kb on + strand, within OLJFJH_00705at 57.290 kb on + strand, within OLJFJH_00705at 57.381 kb on + strand, within OLJFJH_00705at 57.660 kb on + strandat 57.660 kb on + strandat 57.661 kb on - strandat 57.680 kb on - strandat 57.771 kb on - strandat 57.966 kb on + strandat 58.170 kb on - strandat 58.241 kb on - strandat 58.242 kb on + strandat 58.279 kb on + strandat 58.460 kb on + strandat 58.460 kb on + strandat 58.461 kb on - strandat 58.482 kb on - strand, within OLJFJH_00710at 58.482 kb on - strand, within OLJFJH_00710at 58.547 kb on + strand, within OLJFJH_00710at 58.547 kb on + strand, within OLJFJH_00710at 58.547 kb on + strand, within OLJFJH_00710at 58.547 kb on + strand, within OLJFJH_00710at 58.548 kb on - strand, within OLJFJH_00710at 58.586 kb on + strand, within OLJFJH_00710at 58.587 kb on - strand, within OLJFJH_00710at 58.588 kb on + strand, within OLJFJH_00710at 58.588 kb on + strand, within OLJFJH_00710at 58.589 kb on - strand, within OLJFJH_00710at 58.589 kb on - strand, within OLJFJH_00710at 58.590 kb on + strand, within OLJFJH_00710at 58.590 kb on + strand, within OLJFJH_00710at 58.590 kb on + strand, within OLJFJH_00710at 58.590 kb on + strand, within OLJFJH_00710at 58.590 kb on + strand, within OLJFJH_00710at 58.590 kb on + strand, within OLJFJH_00710at 58.591 kb on - strand, within OLJFJH_00710at 58.591 kb on - strand, within OLJFJH_00710at 58.625 kb on + strand, within OLJFJH_00710at 58.626 kb on - strand, within OLJFJH_00710

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-6
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54,547 - -1.6
54,631 + -1.5
54,645 - -0.2
54,704 + +0.3
54,704 + -0.8
54,704 + -1.6
54,704 + -0.3
54,705 - -1.1
54,705 - -1.3
54,705 - -0.5
54,705 - -0.8
54,705 - -1.7
54,707 - -1.8
54,707 - -0.6
55,173 - OLJFJH_00700 0.67 -0.5
55,173 - OLJFJH_00700 0.67 +0.9
55,173 - OLJFJH_00700 0.67 -1.2
55,303 - OLJFJH_00700 0.83 -2.2
55,303 - OLJFJH_00700 0.83 -0.1
55,357 + -3.2
55,565 + -0.7
55,594 - +0.5
55,662 + +0.5
55,662 + -0.5
55,662 + -2.0
55,662 + -1.9
55,663 - +1.0
55,710 + OLJFJH_00705 0.10 -0.5
55,711 - OLJFJH_00705 0.10 -1.0
55,713 + OLJFJH_00705 0.10 +0.3
55,754 + OLJFJH_00705 0.12 -0.0
55,755 - OLJFJH_00705 0.12 +0.4
55,808 + OLJFJH_00705 0.15 -0.3
55,809 - OLJFJH_00705 0.15 -0.6
55,809 - OLJFJH_00705 0.15 -0.2
55,809 - OLJFJH_00705 0.15 -1.0
55,830 + OLJFJH_00705 0.16 +0.2
55,831 - OLJFJH_00705 0.16 +0.2
55,868 + OLJFJH_00705 0.17 -0.1
55,868 + OLJFJH_00705 0.17 +1.8
55,868 + OLJFJH_00705 0.17 -2.6
55,868 + OLJFJH_00705 0.17 -0.7
55,868 + OLJFJH_00705 0.17 -1.1
55,872 + OLJFJH_00705 0.18 -1.7
55,873 - OLJFJH_00705 0.18 -0.1
55,898 + OLJFJH_00705 0.19 -1.2
55,898 + OLJFJH_00705 0.19 -0.9
55,898 + OLJFJH_00705 0.19 -0.8
55,898 + OLJFJH_00705 0.19 -1.0
55,898 + OLJFJH_00705 0.19 -1.0
55,898 + OLJFJH_00705 0.19 +0.1
55,899 - OLJFJH_00705 0.19 -0.3
55,899 - OLJFJH_00705 0.19 +1.1
55,899 - OLJFJH_00705 0.19 -0.7
55,899 - OLJFJH_00705 0.19 +0.2
56,105 + OLJFJH_00705 0.28 -1.4
56,133 + OLJFJH_00705 0.29 -0.6
56,134 - OLJFJH_00705 0.29 +1.0
56,142 + OLJFJH_00705 0.30 +1.1
56,360 + OLJFJH_00705 0.40 +0.8
56,390 + OLJFJH_00705 0.41 -0.8
56,397 - OLJFJH_00705 0.41 -0.9
56,628 + OLJFJH_00705 0.52 +0.1
56,654 + OLJFJH_00705 0.53 -0.2
56,654 + OLJFJH_00705 0.53 -1.7
56,655 - OLJFJH_00705 0.53 -1.1
56,658 + OLJFJH_00705 0.53 -0.7
56,659 - OLJFJH_00705 0.53 +0.7
56,667 - OLJFJH_00705 0.53 -0.8
56,876 + OLJFJH_00705 0.63 -0.6
56,877 - OLJFJH_00705 0.63 -1.1
56,904 - OLJFJH_00705 0.64 -0.5
56,904 - OLJFJH_00705 0.64 +0.4
56,904 - OLJFJH_00705 0.64 -0.8
56,965 - OLJFJH_00705 0.67 -0.8
57,030 - OLJFJH_00705 0.70 -1.6
57,030 - OLJFJH_00705 0.70 -0.8
57,106 - OLJFJH_00705 0.73 -0.1
57,112 + OLJFJH_00705 0.73 -1.0
57,112 + OLJFJH_00705 0.73 -0.3
57,257 + OLJFJH_00705 0.80 +0.4
57,257 + OLJFJH_00705 0.80 -0.9
57,257 + OLJFJH_00705 0.80 -0.4
57,257 + OLJFJH_00705 0.80 -0.6
57,272 - OLJFJH_00705 0.81 -1.3
57,290 + OLJFJH_00705 0.82 -0.4
57,290 + OLJFJH_00705 0.82 +0.4
57,290 + OLJFJH_00705 0.82 -1.3
57,381 + OLJFJH_00705 0.86 -1.1
57,660 + +0.1
57,660 + +0.2
57,661 - -0.1
57,680 - -1.1
57,771 - -0.2
57,966 + -0.5
58,170 - +0.5
58,241 - -0.5
58,242 + +0.5
58,279 + -1.1
58,460 + -0.5
58,460 + +1.0
58,461 - +0.3
58,482 - OLJFJH_00710 0.11 +1.0
58,482 - OLJFJH_00710 0.11 +0.6
58,547 + OLJFJH_00710 0.39 +0.9
58,547 + OLJFJH_00710 0.39 -0.7
58,547 + OLJFJH_00710 0.39 -1.9
58,547 + OLJFJH_00710 0.39 -1.0
58,548 - OLJFJH_00710 0.40 -0.0
58,586 + OLJFJH_00710 0.57 -0.8
58,587 - OLJFJH_00710 0.57 -0.2
58,588 + OLJFJH_00710 0.57 -0.3
58,588 + OLJFJH_00710 0.57 -0.4
58,589 - OLJFJH_00710 0.58 -0.4
58,589 - OLJFJH_00710 0.58 +1.1
58,590 + OLJFJH_00710 0.58 -1.3
58,590 + OLJFJH_00710 0.58 -1.2
58,590 + OLJFJH_00710 0.58 -0.8
58,590 + OLJFJH_00710 0.58 +0.7
58,590 + OLJFJH_00710 0.58 -1.3
58,590 + OLJFJH_00710 0.58 -1.4
58,591 - OLJFJH_00710 0.59 -0.3
58,591 - OLJFJH_00710 0.59 +2.8
58,625 + OLJFJH_00710 0.74 +0.4
58,626 - OLJFJH_00710 0.74 +0.1

Or see this region's nucleotide sequence