Strain Fitness in Erwinia amylovora T8 around OLJFJH_16735

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_16730 and OLJFJH_16735 are separated by 46 nucleotidesOLJFJH_16735 and OLJFJH_16740 are separated by 913 nucleotides OLJFJH_16730: OLJFJH_16730 - 2-phospho-L-lactate transferase CofD, at 3,532,182 to 3,533,090 _16730 OLJFJH_16735: OLJFJH_16735 - excinuclease ABC subunit UvrB, at 3,533,137 to 3,535,161 _16735 OLJFJH_16740: OLJFJH_16740 - ABC transporter ATP-binding protein, at 3,536,075 to 3,536,791 _16740 Position (kb) 3533 3534 3535 3536Strain fitness (log2 ratio) -2 -1 0 1 2at 3532.138 kb on - strandat 3532.138 kb on - strandat 3532.198 kb on + strandat 3532.198 kb on + strandat 3532.198 kb on + strandat 3532.463 kb on + strand, within OLJFJH_16730at 3532.463 kb on + strand, within OLJFJH_16730at 3532.464 kb on - strand, within OLJFJH_16730at 3532.464 kb on - strand, within OLJFJH_16730at 3532.516 kb on + strand, within OLJFJH_16730at 3532.517 kb on - strand, within OLJFJH_16730at 3532.526 kb on + strand, within OLJFJH_16730at 3532.527 kb on - strand, within OLJFJH_16730at 3533.413 kb on - strand, within OLJFJH_16735at 3533.698 kb on - strand, within OLJFJH_16735at 3533.718 kb on + strand, within OLJFJH_16735at 3533.768 kb on + strand, within OLJFJH_16735at 3533.966 kb on + strand, within OLJFJH_16735at 3533.967 kb on - strand, within OLJFJH_16735at 3533.967 kb on - strand, within OLJFJH_16735at 3533.991 kb on - strand, within OLJFJH_16735at 3533.991 kb on - strand, within OLJFJH_16735at 3533.991 kb on - strand, within OLJFJH_16735at 3533.995 kb on - strand, within OLJFJH_16735at 3533.995 kb on - strand, within OLJFJH_16735at 3534.111 kb on - strand, within OLJFJH_16735at 3534.228 kb on - strand, within OLJFJH_16735at 3534.432 kb on - strand, within OLJFJH_16735at 3534.438 kb on + strand, within OLJFJH_16735at 3534.499 kb on + strand, within OLJFJH_16735at 3534.500 kb on - strand, within OLJFJH_16735at 3534.534 kb on - strand, within OLJFJH_16735at 3534.860 kb on + strand, within OLJFJH_16735at 3534.860 kb on + strand, within OLJFJH_16735at 3534.861 kb on - strand, within OLJFJH_16735at 3534.879 kb on - strand, within OLJFJH_16735at 3534.885 kb on - strand, within OLJFJH_16735at 3534.888 kb on - strand, within OLJFJH_16735at 3534.888 kb on - strand, within OLJFJH_16735at 3534.899 kb on + strand, within OLJFJH_16735at 3534.900 kb on - strand, within OLJFJH_16735at 3534.900 kb on - strand, within OLJFJH_16735at 3535.128 kb on + strandat 3535.129 kb on - strandat 3535.285 kb on - strandat 3535.411 kb on - strandat 3535.436 kb on - strandat 3535.439 kb on + strandat 3535.461 kb on + strandat 3535.462 kb on - strandat 3535.522 kb on - strandat 3535.541 kb on + strandat 3535.542 kb on - strandat 3535.603 kb on + strandat 3535.604 kb on - strandat 3535.604 kb on - strandat 3535.604 kb on - strandat 3535.605 kb on + strandat 3535.605 kb on + strandat 3535.729 kb on + strandat 3535.822 kb on - strandat 3535.822 kb on - strandat 3535.909 kb on + strandat 3535.909 kb on + strandat 3535.910 kb on - strandat 3535.910 kb on - strandat 3535.956 kb on - strandat 3536.050 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-5
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3,532,138 - -0.0
3,532,138 - +0.4
3,532,198 + -0.1
3,532,198 + -0.2
3,532,198 + -0.8
3,532,463 + OLJFJH_16730 0.31 -0.7
3,532,463 + OLJFJH_16730 0.31 -0.8
3,532,464 - OLJFJH_16730 0.31 -0.8
3,532,464 - OLJFJH_16730 0.31 -0.1
3,532,516 + OLJFJH_16730 0.37 -0.0
3,532,517 - OLJFJH_16730 0.37 +0.6
3,532,526 + OLJFJH_16730 0.38 -0.2
3,532,527 - OLJFJH_16730 0.38 +0.3
3,533,413 - OLJFJH_16735 0.14 -0.2
3,533,698 - OLJFJH_16735 0.28 +0.6
3,533,718 + OLJFJH_16735 0.29 +0.4
3,533,768 + OLJFJH_16735 0.31 -0.4
3,533,966 + OLJFJH_16735 0.41 +0.7
3,533,967 - OLJFJH_16735 0.41 +0.1
3,533,967 - OLJFJH_16735 0.41 +0.3
3,533,991 - OLJFJH_16735 0.42 +0.5
3,533,991 - OLJFJH_16735 0.42 +1.2
3,533,991 - OLJFJH_16735 0.42 -0.1
3,533,995 - OLJFJH_16735 0.42 -0.3
3,533,995 - OLJFJH_16735 0.42 +0.4
3,534,111 - OLJFJH_16735 0.48 +0.6
3,534,228 - OLJFJH_16735 0.54 -0.1
3,534,432 - OLJFJH_16735 0.64 +1.6
3,534,438 + OLJFJH_16735 0.64 -0.2
3,534,499 + OLJFJH_16735 0.67 +0.1
3,534,500 - OLJFJH_16735 0.67 +1.0
3,534,534 - OLJFJH_16735 0.69 +0.8
3,534,860 + OLJFJH_16735 0.85 +1.5
3,534,860 + OLJFJH_16735 0.85 -0.5
3,534,861 - OLJFJH_16735 0.85 +0.7
3,534,879 - OLJFJH_16735 0.86 +0.2
3,534,885 - OLJFJH_16735 0.86 +1.0
3,534,888 - OLJFJH_16735 0.86 -0.2
3,534,888 - OLJFJH_16735 0.86 +0.9
3,534,899 + OLJFJH_16735 0.87 +0.4
3,534,900 - OLJFJH_16735 0.87 +0.4
3,534,900 - OLJFJH_16735 0.87 +0.1
3,535,128 + +0.7
3,535,129 - +0.2
3,535,285 - +0.6
3,535,411 - +0.0
3,535,436 - +0.7
3,535,439 + -1.6
3,535,461 + +0.2
3,535,462 - -0.1
3,535,522 - +0.1
3,535,541 + +0.7
3,535,542 - +0.1
3,535,603 + +1.7
3,535,604 - -0.4
3,535,604 - -0.5
3,535,604 - +0.4
3,535,605 + +2.2
3,535,605 + +0.1
3,535,729 + -0.6
3,535,822 - -2.0
3,535,822 - +0.2
3,535,909 + +1.1
3,535,909 + -0.5
3,535,910 - +0.6
3,535,910 - -0.1
3,535,956 - -0.2
3,536,050 - +0.2

Or see this region's nucleotide sequence