Strain Fitness in Erwinia amylovora T8 around OLJFJH_15615

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_15610 and OLJFJH_15615 are separated by 30 nucleotidesOLJFJH_15615 and OLJFJH_15620 are separated by 11 nucleotidesOLJFJH_15620 and OLJFJH_15625 are separated by 3 nucleotidesOLJFJH_15625 and OLJFJH_15630 are separated by 154 nucleotides OLJFJH_15610: OLJFJH_15610 - flagellar hook protein FlgE, at 3,292,993 to 3,294,201 _15610 OLJFJH_15615: OLJFJH_15615 - flagellar hook assembly protein FlgD, at 3,294,232 to 3,294,903 _15615 OLJFJH_15620: OLJFJH_15620 - flagellar basal body rod protein FlgC, at 3,294,915 to 3,295,319 _15620 OLJFJH_15625: OLJFJH_15625 - flagellar basal body rod protein FlgB, at 3,295,323 to 3,295,736 _15625 OLJFJH_15630: OLJFJH_15630 - flagellar basal body P-ring formation protein FlgA, at 3,295,891 to 3,296,559 _15630 Position (kb) 3294 3295Strain fitness (log2 ratio) -3 -2 -1 0 1at 3293.294 kb on + strand, within OLJFJH_15610at 3293.294 kb on + strand, within OLJFJH_15610at 3293.295 kb on - strand, within OLJFJH_15610at 3293.352 kb on + strand, within OLJFJH_15610at 3293.353 kb on - strand, within OLJFJH_15610at 3293.354 kb on + strand, within OLJFJH_15610at 3293.355 kb on - strand, within OLJFJH_15610at 3293.487 kb on + strand, within OLJFJH_15610at 3293.488 kb on - strand, within OLJFJH_15610at 3293.488 kb on - strand, within OLJFJH_15610at 3293.607 kb on - strand, within OLJFJH_15610at 3293.607 kb on - strand, within OLJFJH_15610at 3293.702 kb on + strand, within OLJFJH_15610at 3293.922 kb on - strand, within OLJFJH_15610at 3293.922 kb on - strand, within OLJFJH_15610at 3294.204 kb on - strandat 3294.204 kb on - strandat 3294.314 kb on - strand, within OLJFJH_15615at 3294.392 kb on + strand, within OLJFJH_15615at 3294.393 kb on - strand, within OLJFJH_15615at 3294.393 kb on - strand, within OLJFJH_15615at 3294.393 kb on - strand, within OLJFJH_15615at 3294.393 kb on - strand, within OLJFJH_15615at 3294.397 kb on - strand, within OLJFJH_15615at 3294.397 kb on - strand, within OLJFJH_15615at 3294.397 kb on - strand, within OLJFJH_15615at 3294.447 kb on + strand, within OLJFJH_15615at 3294.447 kb on + strand, within OLJFJH_15615at 3294.447 kb on + strand, within OLJFJH_15615at 3294.447 kb on + strand, within OLJFJH_15615at 3294.448 kb on - strand, within OLJFJH_15615at 3294.448 kb on - strand, within OLJFJH_15615at 3294.448 kb on - strand, within OLJFJH_15615at 3294.451 kb on + strand, within OLJFJH_15615at 3294.451 kb on + strand, within OLJFJH_15615at 3294.452 kb on - strand, within OLJFJH_15615at 3294.550 kb on + strand, within OLJFJH_15615at 3294.808 kb on - strand, within OLJFJH_15615at 3294.884 kb on - strandat 3294.897 kb on + strandat 3294.897 kb on + strandat 3294.898 kb on - strandat 3295.051 kb on + strand, within OLJFJH_15620at 3295.195 kb on + strand, within OLJFJH_15620at 3295.195 kb on + strand, within OLJFJH_15620at 3295.196 kb on - strand, within OLJFJH_15620at 3295.196 kb on - strand, within OLJFJH_15620at 3295.196 kb on - strand, within OLJFJH_15620at 3295.311 kb on - strandat 3295.321 kb on - strandat 3295.324 kb on + strandat 3295.390 kb on + strand, within OLJFJH_15625at 3295.390 kb on + strand, within OLJFJH_15625at 3295.433 kb on + strand, within OLJFJH_15625at 3295.434 kb on - strand, within OLJFJH_15625at 3295.477 kb on + strand, within OLJFJH_15625at 3295.478 kb on - strand, within OLJFJH_15625at 3295.490 kb on + strand, within OLJFJH_15625at 3295.590 kb on + strand, within OLJFJH_15625at 3295.590 kb on + strand, within OLJFJH_15625at 3295.703 kb on + strandat 3295.773 kb on + strandat 3295.773 kb on + strandat 3295.774 kb on - strandat 3295.774 kb on - strandat 3295.804 kb on + strandat 3295.805 kb on - strandat 3295.811 kb on - strandat 3295.823 kb on + strandat 3295.823 kb on + strandat 3295.824 kb on - strandat 3295.856 kb on - strandat 3295.884 kb on - strandat 3295.897 kb on - strandat 3295.897 kb on - strandat 3295.897 kb on - strandat 3295.900 kb on + strandat 3295.900 kb on + strandat 3295.901 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-5
remove
3,293,294 + OLJFJH_15610 0.25 -0.7
3,293,294 + OLJFJH_15610 0.25 -1.9
3,293,295 - OLJFJH_15610 0.25 -1.4
3,293,352 + OLJFJH_15610 0.30 -3.2
3,293,353 - OLJFJH_15610 0.30 +0.7
3,293,354 + OLJFJH_15610 0.30 -1.0
3,293,355 - OLJFJH_15610 0.30 +0.1
3,293,487 + OLJFJH_15610 0.41 -1.2
3,293,488 - OLJFJH_15610 0.41 -1.5
3,293,488 - OLJFJH_15610 0.41 -1.8
3,293,607 - OLJFJH_15610 0.51 -2.2
3,293,607 - OLJFJH_15610 0.51 -2.1
3,293,702 + OLJFJH_15610 0.59 +0.3
3,293,922 - OLJFJH_15610 0.77 +0.8
3,293,922 - OLJFJH_15610 0.77 -0.5
3,294,204 - -1.7
3,294,204 - +0.3
3,294,314 - OLJFJH_15615 0.12 -1.3
3,294,392 + OLJFJH_15615 0.24 -0.5
3,294,393 - OLJFJH_15615 0.24 -1.3
3,294,393 - OLJFJH_15615 0.24 -1.4
3,294,393 - OLJFJH_15615 0.24 +0.3
3,294,393 - OLJFJH_15615 0.24 -3.1
3,294,397 - OLJFJH_15615 0.25 -1.2
3,294,397 - OLJFJH_15615 0.25 -0.6
3,294,397 - OLJFJH_15615 0.25 -2.1
3,294,447 + OLJFJH_15615 0.32 -1.1
3,294,447 + OLJFJH_15615 0.32 -1.3
3,294,447 + OLJFJH_15615 0.32 -0.9
3,294,447 + OLJFJH_15615 0.32 -1.7
3,294,448 - OLJFJH_15615 0.32 -1.4
3,294,448 - OLJFJH_15615 0.32 -0.9
3,294,448 - OLJFJH_15615 0.32 -1.6
3,294,451 + OLJFJH_15615 0.33 -2.3
3,294,451 + OLJFJH_15615 0.33 -1.4
3,294,452 - OLJFJH_15615 0.33 -1.2
3,294,550 + OLJFJH_15615 0.47 -1.1
3,294,808 - OLJFJH_15615 0.86 -1.6
3,294,884 - -3.0
3,294,897 + -1.0
3,294,897 + -1.6
3,294,898 - -2.0
3,295,051 + OLJFJH_15620 0.34 -1.3
3,295,195 + OLJFJH_15620 0.69 +1.1
3,295,195 + OLJFJH_15620 0.69 +0.2
3,295,196 - OLJFJH_15620 0.69 -1.3
3,295,196 - OLJFJH_15620 0.69 -1.6
3,295,196 - OLJFJH_15620 0.69 -0.4
3,295,311 - -1.6
3,295,321 - -1.1
3,295,324 + -1.7
3,295,390 + OLJFJH_15625 0.16 -0.4
3,295,390 + OLJFJH_15625 0.16 -2.3
3,295,433 + OLJFJH_15625 0.27 -1.4
3,295,434 - OLJFJH_15625 0.27 -1.6
3,295,477 + OLJFJH_15625 0.37 -1.2
3,295,478 - OLJFJH_15625 0.37 -1.5
3,295,490 + OLJFJH_15625 0.40 +0.3
3,295,590 + OLJFJH_15625 0.64 -1.4
3,295,590 + OLJFJH_15625 0.64 -0.9
3,295,703 + -2.0
3,295,773 + -1.1
3,295,773 + -2.7
3,295,774 - +0.4
3,295,774 - +0.7
3,295,804 + -1.6
3,295,805 - -0.8
3,295,811 - +1.5
3,295,823 + -0.9
3,295,823 + +1.1
3,295,824 - -0.4
3,295,856 - -1.8
3,295,884 - +0.4
3,295,897 - -2.3
3,295,897 - +0.7
3,295,897 - -1.7
3,295,900 + -1.5
3,295,900 + -1.0
3,295,901 - -1.1

Or see this region's nucleotide sequence