Strain Fitness in Erwinia amylovora T8 around OLJFJH_17705

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_17690 and OLJFJH_17695 overlap by 1 nucleotidesOLJFJH_17695 and OLJFJH_17700 overlap by 4 nucleotidesOLJFJH_17700 and OLJFJH_17705 are separated by 95 nucleotidesOLJFJH_17705 and OLJFJH_17710 are separated by 80 nucleotides OLJFJH_17690: OLJFJH_17690 - paraslipin, at 3,720,676 to 3,721,590 _17690 OLJFJH_17695: OLJFJH_17695 - NfeD-like C-terminal partner-binding, at 3,721,590 to 3,722,042 _17695 OLJFJH_17700: OLJFJH_17700 - Cu(I)-responsive transcriptional regulator, at 3,722,039 to 3,722,449 _17700 OLJFJH_17705: OLJFJH_17705 - copper-exporting P-type ATPase CopA, at 3,722,545 to 3,725,052 _17705 OLJFJH_17710: OLJFJH_17710 - conjugal transfer protein TraB, at 3,725,133 to 3,725,936 _17710 Position (kb) 3722 3723 3724 3725 3726Strain fitness (log2 ratio) -2 -1 0 1 2at 3721.559 kb on + strandat 3721.559 kb on + strandat 3721.582 kb on - strandat 3721.606 kb on + strandat 3722.167 kb on + strand, within OLJFJH_17700at 3722.168 kb on - strand, within OLJFJH_17700at 3722.168 kb on - strand, within OLJFJH_17700at 3722.335 kb on - strand, within OLJFJH_17700at 3722.335 kb on - strand, within OLJFJH_17700at 3722.491 kb on + strandat 3722.492 kb on - strandat 3722.492 kb on - strandat 3722.497 kb on + strandat 3722.498 kb on - strandat 3722.498 kb on - strandat 3722.503 kb on - strandat 3722.542 kb on - strandat 3722.542 kb on - strandat 3722.542 kb on - strandat 3722.543 kb on + strandat 3722.544 kb on + strandat 3722.544 kb on + strandat 3722.544 kb on + strandat 3722.544 kb on + strandat 3722.544 kb on + strandat 3722.545 kb on - strandat 3722.545 kb on - strandat 3722.545 kb on - strandat 3722.869 kb on - strand, within OLJFJH_17705at 3722.869 kb on - strand, within OLJFJH_17705at 3723.171 kb on + strand, within OLJFJH_17705at 3723.171 kb on + strand, within OLJFJH_17705at 3723.171 kb on + strand, within OLJFJH_17705at 3723.172 kb on - strand, within OLJFJH_17705at 3723.219 kb on + strand, within OLJFJH_17705at 3723.220 kb on - strand, within OLJFJH_17705at 3723.356 kb on + strand, within OLJFJH_17705at 3723.401 kb on - strand, within OLJFJH_17705at 3723.404 kb on - strand, within OLJFJH_17705at 3723.404 kb on - strand, within OLJFJH_17705at 3723.404 kb on - strand, within OLJFJH_17705at 3723.447 kb on + strand, within OLJFJH_17705at 3723.447 kb on + strand, within OLJFJH_17705at 3723.447 kb on + strand, within OLJFJH_17705at 3723.447 kb on + strand, within OLJFJH_17705at 3723.448 kb on - strand, within OLJFJH_17705at 3723.448 kb on - strand, within OLJFJH_17705at 3723.448 kb on - strand, within OLJFJH_17705at 3723.448 kb on - strand, within OLJFJH_17705at 3723.448 kb on - strand, within OLJFJH_17705at 3723.448 kb on - strand, within OLJFJH_17705at 3723.448 kb on - strand, within OLJFJH_17705at 3723.531 kb on - strand, within OLJFJH_17705at 3723.545 kb on + strand, within OLJFJH_17705at 3723.561 kb on + strand, within OLJFJH_17705at 3723.570 kb on - strand, within OLJFJH_17705at 3723.744 kb on - strand, within OLJFJH_17705at 3723.744 kb on - strand, within OLJFJH_17705at 3723.819 kb on + strand, within OLJFJH_17705at 3723.820 kb on - strand, within OLJFJH_17705at 3723.944 kb on - strand, within OLJFJH_17705at 3723.975 kb on + strand, within OLJFJH_17705at 3724.162 kb on - strand, within OLJFJH_17705at 3724.300 kb on - strand, within OLJFJH_17705at 3724.445 kb on + strand, within OLJFJH_17705at 3724.839 kb on - strandat 3724.866 kb on + strandat 3724.866 kb on + strandat 3724.866 kb on + strandat 3724.897 kb on + strandat 3724.897 kb on + strandat 3724.898 kb on - strandat 3724.899 kb on + strandat 3725.112 kb on + strandat 3725.112 kb on + strandat 3725.112 kb on + strandat 3725.132 kb on + strandat 3725.133 kb on - strandat 3725.233 kb on + strand, within OLJFJH_17710at 3725.233 kb on + strand, within OLJFJH_17710at 3725.234 kb on - strand, within OLJFJH_17710at 3725.234 kb on - strand, within OLJFJH_17710at 3725.249 kb on + strand, within OLJFJH_17710at 3725.250 kb on - strand, within OLJFJH_17710at 3725.270 kb on + strand, within OLJFJH_17710at 3725.270 kb on + strand, within OLJFJH_17710at 3725.271 kb on - strand, within OLJFJH_17710at 3725.471 kb on + strand, within OLJFJH_17710at 3725.472 kb on - strand, within OLJFJH_17710at 3725.590 kb on + strand, within OLJFJH_17710at 3725.722 kb on + strand, within OLJFJH_17710at 3725.843 kb on - strand, within OLJFJH_17710at 3725.843 kb on - strand, within OLJFJH_17710at 3725.966 kb on - strandat 3725.970 kb on - strandat 3725.981 kb on + strandat 3725.990 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-4
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3,721,559 + -2.0
3,721,559 + -1.5
3,721,582 - -0.8
3,721,606 + +0.3
3,722,167 + OLJFJH_17700 0.31 +0.6
3,722,168 - OLJFJH_17700 0.31 -1.9
3,722,168 - OLJFJH_17700 0.31 +0.9
3,722,335 - OLJFJH_17700 0.72 -0.1
3,722,335 - OLJFJH_17700 0.72 +1.3
3,722,491 + +0.5
3,722,492 - -1.0
3,722,492 - -1.7
3,722,497 + +0.5
3,722,498 - -0.7
3,722,498 - +1.4
3,722,503 - -0.1
3,722,542 - +0.4
3,722,542 - -0.6
3,722,542 - +0.3
3,722,543 + -0.6
3,722,544 + +0.3
3,722,544 + +1.4
3,722,544 + -0.2
3,722,544 + +1.2
3,722,544 + -0.8
3,722,545 - +0.1
3,722,545 - +0.5
3,722,545 - +1.5
3,722,869 - OLJFJH_17705 0.13 +0.2
3,722,869 - OLJFJH_17705 0.13 -0.3
3,723,171 + OLJFJH_17705 0.25 -0.9
3,723,171 + OLJFJH_17705 0.25 +1.3
3,723,171 + OLJFJH_17705 0.25 +1.2
3,723,172 - OLJFJH_17705 0.25 +1.3
3,723,219 + OLJFJH_17705 0.27 -1.7
3,723,220 - OLJFJH_17705 0.27 +0.5
3,723,356 + OLJFJH_17705 0.32 +0.1
3,723,401 - OLJFJH_17705 0.34 +0.7
3,723,404 - OLJFJH_17705 0.34 -0.9
3,723,404 - OLJFJH_17705 0.34 +0.3
3,723,404 - OLJFJH_17705 0.34 +2.1
3,723,447 + OLJFJH_17705 0.36 -1.1
3,723,447 + OLJFJH_17705 0.36 -1.4
3,723,447 + OLJFJH_17705 0.36 -0.8
3,723,447 + OLJFJH_17705 0.36 +0.7
3,723,448 - OLJFJH_17705 0.36 -0.9
3,723,448 - OLJFJH_17705 0.36 -0.2
3,723,448 - OLJFJH_17705 0.36 +0.5
3,723,448 - OLJFJH_17705 0.36 -0.3
3,723,448 - OLJFJH_17705 0.36 +0.8
3,723,448 - OLJFJH_17705 0.36 -0.2
3,723,448 - OLJFJH_17705 0.36 +0.8
3,723,531 - OLJFJH_17705 0.39 -0.1
3,723,545 + OLJFJH_17705 0.40 +0.8
3,723,561 + OLJFJH_17705 0.41 +1.0
3,723,570 - OLJFJH_17705 0.41 +0.1
3,723,744 - OLJFJH_17705 0.48 +0.9
3,723,744 - OLJFJH_17705 0.48 +0.3
3,723,819 + OLJFJH_17705 0.51 +2.1
3,723,820 - OLJFJH_17705 0.51 -0.1
3,723,944 - OLJFJH_17705 0.56 +1.1
3,723,975 + OLJFJH_17705 0.57 +1.3
3,724,162 - OLJFJH_17705 0.64 +0.5
3,724,300 - OLJFJH_17705 0.70 -1.5
3,724,445 + OLJFJH_17705 0.76 +1.0
3,724,839 - -0.4
3,724,866 + -1.3
3,724,866 + -0.6
3,724,866 + -0.2
3,724,897 + +2.6
3,724,897 + -1.0
3,724,898 - -0.1
3,724,899 + -0.9
3,725,112 + -0.4
3,725,112 + -1.5
3,725,112 + +0.2
3,725,132 + +0.0
3,725,133 - -0.4
3,725,233 + OLJFJH_17710 0.12 +0.3
3,725,233 + OLJFJH_17710 0.12 -0.8
3,725,234 - OLJFJH_17710 0.13 -0.1
3,725,234 - OLJFJH_17710 0.13 -2.3
3,725,249 + OLJFJH_17710 0.14 -1.1
3,725,250 - OLJFJH_17710 0.15 +0.1
3,725,270 + OLJFJH_17710 0.17 -0.3
3,725,270 + OLJFJH_17710 0.17 +0.5
3,725,271 - OLJFJH_17710 0.17 -0.0
3,725,471 + OLJFJH_17710 0.42 +0.3
3,725,472 - OLJFJH_17710 0.42 +1.1
3,725,590 + OLJFJH_17710 0.57 +0.1
3,725,722 + OLJFJH_17710 0.73 -0.5
3,725,843 - OLJFJH_17710 0.88 -0.6
3,725,843 - OLJFJH_17710 0.88 +0.8
3,725,966 - +2.3
3,725,970 - -0.2
3,725,981 + +1.0
3,725,990 - -0.4

Or see this region's nucleotide sequence