Strain Fitness in Erwinia amylovora T8 around OLJFJH_08070

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_08065 and OLJFJH_08070 are separated by 73 nucleotidesOLJFJH_08070 and OLJFJH_08075 are separated by 55 nucleotidesOLJFJH_08075 and OLJFJH_08080 are separated by 61 nucleotides OLJFJH_08065: OLJFJH_08065 - serine kinase, at 1,668,309 to 1,669,553 _08065 OLJFJH_08070: OLJFJH_08070 - acyl-CoA thioesterase, at 1,669,627 to 1,670,010 _08070 OLJFJH_08075: OLJFJH_08075 - biphenyl 2 3-dioxygenase, at 1,670,066 to 1,670,485 _08075 OLJFJH_08080: OLJFJH_08080 - type III secretion system export apparatus subunit SctU, at 1,670,547 to 1,671,629 _08080 Position (kb) 1669 1670 1671Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1668.668 kb on + strand, within OLJFJH_08065at 1668.669 kb on - strand, within OLJFJH_08065at 1668.879 kb on + strand, within OLJFJH_08065at 1668.880 kb on - strand, within OLJFJH_08065at 1668.880 kb on - strand, within OLJFJH_08065at 1668.885 kb on - strand, within OLJFJH_08065at 1668.912 kb on + strand, within OLJFJH_08065at 1668.912 kb on + strand, within OLJFJH_08065at 1668.919 kb on + strand, within OLJFJH_08065at 1668.919 kb on + strand, within OLJFJH_08065at 1668.919 kb on + strand, within OLJFJH_08065at 1668.919 kb on + strand, within OLJFJH_08065at 1668.919 kb on + strand, within OLJFJH_08065at 1668.920 kb on - strand, within OLJFJH_08065at 1668.920 kb on - strand, within OLJFJH_08065at 1668.969 kb on + strand, within OLJFJH_08065at 1668.970 kb on - strand, within OLJFJH_08065at 1668.990 kb on + strand, within OLJFJH_08065at 1669.061 kb on + strand, within OLJFJH_08065at 1669.062 kb on - strand, within OLJFJH_08065at 1669.104 kb on + strand, within OLJFJH_08065at 1669.104 kb on + strand, within OLJFJH_08065at 1669.111 kb on + strand, within OLJFJH_08065at 1669.111 kb on + strand, within OLJFJH_08065at 1669.112 kb on - strand, within OLJFJH_08065at 1669.112 kb on - strand, within OLJFJH_08065at 1669.147 kb on + strand, within OLJFJH_08065at 1669.195 kb on + strand, within OLJFJH_08065at 1669.195 kb on + strand, within OLJFJH_08065at 1669.195 kb on - strand, within OLJFJH_08065at 1669.196 kb on - strand, within OLJFJH_08065at 1669.235 kb on - strand, within OLJFJH_08065at 1669.296 kb on + strand, within OLJFJH_08065at 1669.297 kb on - strand, within OLJFJH_08065at 1669.302 kb on + strand, within OLJFJH_08065at 1669.302 kb on + strand, within OLJFJH_08065at 1669.302 kb on + strand, within OLJFJH_08065at 1669.303 kb on - strand, within OLJFJH_08065at 1669.305 kb on - strand, within OLJFJH_08065at 1669.317 kb on - strand, within OLJFJH_08065at 1669.344 kb on + strand, within OLJFJH_08065at 1669.344 kb on + strand, within OLJFJH_08065at 1669.344 kb on + strand, within OLJFJH_08065at 1669.345 kb on - strand, within OLJFJH_08065at 1669.345 kb on - strand, within OLJFJH_08065at 1669.457 kb on + strandat 1669.554 kb on + strandat 1669.554 kb on + strandat 1669.555 kb on - strandat 1669.555 kb on - strandat 1669.697 kb on - strand, within OLJFJH_08070at 1669.793 kb on - strand, within OLJFJH_08070at 1669.793 kb on - strand, within OLJFJH_08070at 1669.833 kb on + strand, within OLJFJH_08070at 1669.833 kb on + strand, within OLJFJH_08070at 1669.834 kb on - strand, within OLJFJH_08070at 1669.835 kb on + strand, within OLJFJH_08070at 1669.836 kb on - strand, within OLJFJH_08070at 1669.836 kb on - strand, within OLJFJH_08070at 1669.836 kb on - strand, within OLJFJH_08070at 1669.836 kb on - strand, within OLJFJH_08070at 1669.848 kb on + strand, within OLJFJH_08070at 1669.848 kb on + strand, within OLJFJH_08070at 1669.849 kb on - strand, within OLJFJH_08070at 1669.854 kb on + strand, within OLJFJH_08070at 1669.907 kb on + strand, within OLJFJH_08070at 1669.907 kb on + strand, within OLJFJH_08070at 1669.907 kb on + strand, within OLJFJH_08070at 1669.907 kb on + strand, within OLJFJH_08070at 1669.908 kb on - strand, within OLJFJH_08070at 1669.908 kb on - strand, within OLJFJH_08070at 1669.908 kb on - strand, within OLJFJH_08070at 1669.908 kb on - strand, within OLJFJH_08070at 1669.908 kb on - strand, within OLJFJH_08070at 1669.943 kb on + strand, within OLJFJH_08070at 1669.944 kb on - strand, within OLJFJH_08070at 1669.944 kb on - strand, within OLJFJH_08070at 1669.995 kb on - strandat 1670.021 kb on + strandat 1670.021 kb on + strandat 1670.022 kb on - strandat 1670.054 kb on - strandat 1670.091 kb on + strandat 1670.091 kb on + strandat 1670.091 kb on + strandat 1670.299 kb on + strand, within OLJFJH_08075at 1670.300 kb on - strand, within OLJFJH_08075at 1670.300 kb on - strand, within OLJFJH_08075at 1670.403 kb on + strand, within OLJFJH_08075at 1670.403 kb on + strand, within OLJFJH_08075at 1670.403 kb on + strand, within OLJFJH_08075at 1670.404 kb on - strand, within OLJFJH_08075at 1670.475 kb on - strandat 1670.479 kb on + strandat 1670.479 kb on + strandat 1670.480 kb on - strandat 1670.480 kb on - strandat 1670.480 kb on - strandat 1670.517 kb on + strandat 1670.517 kb on + strandat 1670.538 kb on + strandat 1670.538 kb on + strandat 1670.539 kb on - strandat 1670.636 kb on + strandat 1670.637 kb on - strandat 1670.637 kb on - strandat 1670.637 kb on - strandat 1670.693 kb on + strand, within OLJFJH_08080at 1670.765 kb on + strand, within OLJFJH_08080at 1670.765 kb on + strand, within OLJFJH_08080at 1670.774 kb on + strand, within OLJFJH_08080at 1670.775 kb on - strand, within OLJFJH_08080at 1670.806 kb on + strand, within OLJFJH_08080at 1670.807 kb on - strand, within OLJFJH_08080at 1670.807 kb on - strand, within OLJFJH_08080at 1670.894 kb on + strand, within OLJFJH_08080at 1671.010 kb on + strand, within OLJFJH_08080

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-4
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1,668,668 + OLJFJH_08065 0.29 +2.3
1,668,669 - OLJFJH_08065 0.29 +0.7
1,668,879 + OLJFJH_08065 0.46 -0.2
1,668,880 - OLJFJH_08065 0.46 -0.9
1,668,880 - OLJFJH_08065 0.46 +1.5
1,668,885 - OLJFJH_08065 0.46 +2.1
1,668,912 + OLJFJH_08065 0.48 -0.2
1,668,912 + OLJFJH_08065 0.48 -1.5
1,668,919 + OLJFJH_08065 0.49 -1.1
1,668,919 + OLJFJH_08065 0.49 -0.9
1,668,919 + OLJFJH_08065 0.49 -2.3
1,668,919 + OLJFJH_08065 0.49 +4.1
1,668,919 + OLJFJH_08065 0.49 +1.4
1,668,920 - OLJFJH_08065 0.49 -2.1
1,668,920 - OLJFJH_08065 0.49 +0.2
1,668,969 + OLJFJH_08065 0.53 +1.0
1,668,970 - OLJFJH_08065 0.53 -1.0
1,668,990 + OLJFJH_08065 0.55 -1.0
1,669,061 + OLJFJH_08065 0.60 -1.4
1,669,062 - OLJFJH_08065 0.60 -0.3
1,669,104 + OLJFJH_08065 0.64 -0.2
1,669,104 + OLJFJH_08065 0.64 -1.1
1,669,111 + OLJFJH_08065 0.64 -1.0
1,669,111 + OLJFJH_08065 0.64 -0.3
1,669,112 - OLJFJH_08065 0.64 -0.2
1,669,112 - OLJFJH_08065 0.64 -0.2
1,669,147 + OLJFJH_08065 0.67 +0.2
1,669,195 + OLJFJH_08065 0.71 -0.3
1,669,195 + OLJFJH_08065 0.71 -0.1
1,669,195 - OLJFJH_08065 0.71 -0.5
1,669,196 - OLJFJH_08065 0.71 +0.4
1,669,235 - OLJFJH_08065 0.74 -1.0
1,669,296 + OLJFJH_08065 0.79 -1.8
1,669,297 - OLJFJH_08065 0.79 +0.6
1,669,302 + OLJFJH_08065 0.80 -1.3
1,669,302 + OLJFJH_08065 0.80 -0.4
1,669,302 + OLJFJH_08065 0.80 -1.2
1,669,303 - OLJFJH_08065 0.80 +0.2
1,669,305 - OLJFJH_08065 0.80 +2.2
1,669,317 - OLJFJH_08065 0.81 -0.1
1,669,344 + OLJFJH_08065 0.83 -0.1
1,669,344 + OLJFJH_08065 0.83 +1.0
1,669,344 + OLJFJH_08065 0.83 +0.5
1,669,345 - OLJFJH_08065 0.83 +1.4
1,669,345 - OLJFJH_08065 0.83 +0.1
1,669,457 + +0.5
1,669,554 + -0.6
1,669,554 + -1.8
1,669,555 - +1.4
1,669,555 - -1.2
1,669,697 - OLJFJH_08070 0.18 +0.2
1,669,793 - OLJFJH_08070 0.43 -0.7
1,669,793 - OLJFJH_08070 0.43 +1.2
1,669,833 + OLJFJH_08070 0.54 +0.7
1,669,833 + OLJFJH_08070 0.54 -1.1
1,669,834 - OLJFJH_08070 0.54 +0.2
1,669,835 + OLJFJH_08070 0.54 -0.0
1,669,836 - OLJFJH_08070 0.54 +1.3
1,669,836 - OLJFJH_08070 0.54 +0.6
1,669,836 - OLJFJH_08070 0.54 +1.9
1,669,836 - OLJFJH_08070 0.54 -0.3
1,669,848 + OLJFJH_08070 0.58 +0.1
1,669,848 + OLJFJH_08070 0.58 +1.0
1,669,849 - OLJFJH_08070 0.58 +0.0
1,669,854 + OLJFJH_08070 0.59 +0.2
1,669,907 + OLJFJH_08070 0.73 -1.6
1,669,907 + OLJFJH_08070 0.73 +0.2
1,669,907 + OLJFJH_08070 0.73 +0.3
1,669,907 + OLJFJH_08070 0.73 +0.2
1,669,908 - OLJFJH_08070 0.73 +0.6
1,669,908 - OLJFJH_08070 0.73 +0.8
1,669,908 - OLJFJH_08070 0.73 -1.2
1,669,908 - OLJFJH_08070 0.73 -1.9
1,669,908 - OLJFJH_08070 0.73 -1.4
1,669,943 + OLJFJH_08070 0.82 +0.6
1,669,944 - OLJFJH_08070 0.83 +0.9
1,669,944 - OLJFJH_08070 0.83 +0.7
1,669,995 - -1.1
1,670,021 + -1.2
1,670,021 + +0.0
1,670,022 - -1.2
1,670,054 - -1.1
1,670,091 + +0.6
1,670,091 + -0.7
1,670,091 + +1.9
1,670,299 + OLJFJH_08075 0.55 -0.5
1,670,300 - OLJFJH_08075 0.56 +0.1
1,670,300 - OLJFJH_08075 0.56 -0.9
1,670,403 + OLJFJH_08075 0.80 +0.3
1,670,403 + OLJFJH_08075 0.80 +1.6
1,670,403 + OLJFJH_08075 0.80 +0.9
1,670,404 - OLJFJH_08075 0.80 -0.9
1,670,475 - +0.6
1,670,479 + +0.3
1,670,479 + -0.9
1,670,480 - +3.6
1,670,480 - -0.1
1,670,480 - +0.1
1,670,517 + -0.8
1,670,517 + -0.4
1,670,538 + +1.2
1,670,538 + +2.6
1,670,539 - +1.5
1,670,636 + +0.6
1,670,637 - -0.0
1,670,637 - -0.8
1,670,637 - -1.2
1,670,693 + OLJFJH_08080 0.13 -0.7
1,670,765 + OLJFJH_08080 0.20 -0.6
1,670,765 + OLJFJH_08080 0.20 -0.9
1,670,774 + OLJFJH_08080 0.21 +0.1
1,670,775 - OLJFJH_08080 0.21 -1.5
1,670,806 + OLJFJH_08080 0.24 +1.7
1,670,807 - OLJFJH_08080 0.24 -1.0
1,670,807 - OLJFJH_08080 0.24 +0.4
1,670,894 + OLJFJH_08080 0.32 -0.1
1,671,010 + OLJFJH_08080 0.43 -0.5

Or see this region's nucleotide sequence