Experiment: D-Xylose (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_05011 and PFR28_05012 are separated by 31 nucleotides PFR28_05012 and PFR28_05013 are separated by 179 nucleotides PFR28_05013 and PFR28_05014 are separated by 10 nucleotides
PFR28_05011: PFR28_05011 - Type 3 secretion system secretin, at 5,714,846 to 5,716,918
_05011
PFR28_05012: PFR28_05012 - Shikimate kinase 1, at 5,716,950 to 5,717,441
_05012
PFR28_05013: PFR28_05013 - 3-dehydroquinate synthase, at 5,717,621 to 5,718,721
_05013
PFR28_05014: PFR28_05014 - Cell division protein DamX, at 5,718,732 to 5,720,321
_05014
Position (kb) 5717
5718
5719 Strain fitness (log2 ratio) -1
0
1 at 5716.675 kb on - strand, within PFR28_05011 at 5716.759 kb on + strand at 5716.759 kb on + strand at 5716.759 kb on + strand at 5716.759 kb on + strand at 5716.759 kb on + strand at 5716.760 kb on - strand at 5716.776 kb on + strand at 5716.776 kb on + strand at 5716.776 kb on + strand at 5716.776 kb on + strand at 5716.777 kb on - strand at 5716.777 kb on - strand at 5716.777 kb on - strand at 5716.780 kb on + strand at 5716.780 kb on + strand at 5716.780 kb on + strand at 5716.780 kb on + strand at 5716.780 kb on + strand at 5716.781 kb on - strand at 5716.781 kb on - strand at 5716.781 kb on - strand at 5716.781 kb on - strand at 5716.781 kb on - strand at 5716.781 kb on - strand at 5716.781 kb on - strand at 5716.781 kb on - strand at 5716.781 kb on - strand at 5716.781 kb on - strand at 5716.781 kb on - strand at 5716.781 kb on - strand at 5716.809 kb on - strand at 5716.809 kb on - strand at 5716.809 kb on - strand at 5716.866 kb on + strand at 5716.866 kb on + strand at 5716.866 kb on + strand at 5716.866 kb on + strand at 5716.882 kb on + strand at 5716.883 kb on - strand at 5717.554 kb on + strand at 5717.554 kb on + strand at 5718.669 kb on + strand at 5718.669 kb on + strand at 5718.669 kb on + strand at 5718.712 kb on + strand at 5718.712 kb on + strand at 5718.719 kb on + strand at 5718.720 kb on - strand at 5718.722 kb on + strand at 5718.722 kb on + strand at 5718.722 kb on + strand at 5718.722 kb on + strand at 5718.723 kb on - strand at 5718.723 kb on - strand at 5718.723 kb on - strand at 5718.737 kb on + strand at 5718.737 kb on + strand at 5718.737 kb on + strand at 5718.737 kb on + strand at 5718.737 kb on + strand at 5718.738 kb on - strand at 5718.738 kb on - strand at 5718.738 kb on - strand at 5718.738 kb on - strand at 5718.738 kb on - strand at 5718.738 kb on - strand at 5718.873 kb on + strand at 5718.874 kb on - strand at 5719.113 kb on + strand, within PFR28_05014 at 5719.113 kb on + strand, within PFR28_05014 at 5719.113 kb on + strand, within PFR28_05014 at 5719.113 kb on + strand, within PFR28_05014 at 5719.114 kb on - strand, within PFR28_05014 at 5719.114 kb on - strand, within PFR28_05014 at 5719.114 kb on - strand, within PFR28_05014 at 5719.114 kb on - strand, within PFR28_05014 at 5719.296 kb on + strand, within PFR28_05014 at 5719.296 kb on + strand, within PFR28_05014 at 5719.296 kb on + strand, within PFR28_05014 at 5719.320 kb on + strand, within PFR28_05014 at 5719.493 kb on + strand, within PFR28_05014 at 5719.493 kb on + strand, within PFR28_05014 at 5719.493 kb on + strand, within PFR28_05014 at 5719.493 kb on + strand, within PFR28_05014 at 5719.494 kb on - strand, within PFR28_05014 at 5719.522 kb on + strand, within PFR28_05014 at 5719.522 kb on + strand, within PFR28_05014 at 5719.522 kb on + strand, within PFR28_05014 at 5719.522 kb on + strand, within PFR28_05014 at 5719.522 kb on + strand, within PFR28_05014 at 5719.522 kb on + strand, within PFR28_05014 at 5719.522 kb on + strand, within PFR28_05014 at 5719.523 kb on - strand, within PFR28_05014 at 5719.523 kb on - strand, within PFR28_05014 at 5719.523 kb on - strand, within PFR28_05014 at 5719.523 kb on - strand, within PFR28_05014
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) 10 mM remove 5,716,675 - PFR28_05011 0.88 +0.6 5,716,759 + -0.4 5,716,759 + +0.4 5,716,759 + -1.1 5,716,759 + -1.1 5,716,759 + -0.1 5,716,760 - +0.5 5,716,776 + -0.6 5,716,776 + -0.1 5,716,776 + -1.7 5,716,776 + -0.5 5,716,777 - +0.2 5,716,777 - +1.1 5,716,777 - -0.9 5,716,780 + -0.4 5,716,780 + -1.0 5,716,780 + -0.9 5,716,780 + -0.7 5,716,780 + +0.4 5,716,781 - +0.1 5,716,781 - -0.0 5,716,781 - +0.2 5,716,781 - -0.4 5,716,781 - +0.1 5,716,781 - +0.2 5,716,781 - -0.4 5,716,781 - +0.3 5,716,781 - -0.7 5,716,781 - -1.2 5,716,781 - -0.0 5,716,781 - +0.9 5,716,809 - -0.7 5,716,809 - -1.6 5,716,809 - -0.4 5,716,866 + -0.4 5,716,866 + +0.2 5,716,866 + +0.5 5,716,866 + -0.7 5,716,882 + -0.7 5,716,883 - +0.6 5,717,554 + -1.4 5,717,554 + -0.4 5,718,669 + +0.6 5,718,669 + +1.4 5,718,669 + -0.4 5,718,712 + -0.7 5,718,712 + -0.0 5,718,719 + -0.2 5,718,720 - -0.2 5,718,722 + +1.1 5,718,722 + +0.2 5,718,722 + +0.3 5,718,722 + -0.7 5,718,723 - -0.4 5,718,723 - +0.5 5,718,723 - +0.9 5,718,737 + +0.6 5,718,737 + +0.6 5,718,737 + +0.0 5,718,737 + +1.0 5,718,737 + +0.4 5,718,738 - +0.3 5,718,738 - +0.3 5,718,738 - +0.5 5,718,738 - +0.1 5,718,738 - -1.2 5,718,738 - -0.0 5,718,873 + +0.5 5,718,874 - -0.9 5,719,113 + PFR28_05014 0.24 +0.8 5,719,113 + PFR28_05014 0.24 -0.5 5,719,113 + PFR28_05014 0.24 +0.6 5,719,113 + PFR28_05014 0.24 -0.6 5,719,114 - PFR28_05014 0.24 +0.7 5,719,114 - PFR28_05014 0.24 +0.1 5,719,114 - PFR28_05014 0.24 -0.4 5,719,114 - PFR28_05014 0.24 +0.7 5,719,296 + PFR28_05014 0.35 -0.7 5,719,296 + PFR28_05014 0.35 +0.0 5,719,296 + PFR28_05014 0.35 -0.1 5,719,320 + PFR28_05014 0.37 -0.2 5,719,493 + PFR28_05014 0.48 +0.4 5,719,493 + PFR28_05014 0.48 +0.4 5,719,493 + PFR28_05014 0.48 +0.4 5,719,493 + PFR28_05014 0.48 +0.3 5,719,494 - PFR28_05014 0.48 +0.1 5,719,522 + PFR28_05014 0.50 -0.1 5,719,522 + PFR28_05014 0.50 +0.5 5,719,522 + PFR28_05014 0.50 +0.6 5,719,522 + PFR28_05014 0.50 +0.2 5,719,522 + PFR28_05014 0.50 +0.6 5,719,522 + PFR28_05014 0.50 -0.1 5,719,522 + PFR28_05014 0.50 +0.4 5,719,523 - PFR28_05014 0.50 +0.1 5,719,523 - PFR28_05014 0.50 +0.8 5,719,523 - PFR28_05014 0.50 +0.0 5,719,523 - PFR28_05014 0.50 -0.1
Or see this region's nucleotide sequence