Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS29890

Experiment: D,L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Lactate (C)
6,646,522	+		PFLU_RS29885	0.34	-1.9
6,646,522	+		PFLU_RS29885	0.34	-3.6
6,646,522	+		PFLU_RS29885	0.34	-2.8
6,646,523	-		PFLU_RS29885	0.34	-3.0
6,646,523	-		PFLU_RS29885	0.34	-3.3
6,646,523	-		PFLU_RS29885	0.34	-3.3
6,646,523	-		PFLU_RS29885	0.34	-2.5
6,646,523	-		PFLU_RS29885	0.34	-3.1
6,646,523	-		PFLU_RS29885	0.34	-2.6
6,646,594	-		PFLU_RS29885	0.41	-2.6
6,646,696	-		PFLU_RS29885	0.51	-1.1
6,646,696	-		PFLU_RS29885	0.51	-3.6
6,646,777	+		PFLU_RS29885	0.60	+0.6
6,646,777	+		PFLU_RS29885	0.60	-1.4
6,646,777	+		PFLU_RS29885	0.60	-3.4
6,646,777	+		PFLU_RS29885	0.60	-3.7
6,646,778	-		PFLU_RS29885	0.60	-3.8
6,646,778	-		PFLU_RS29885	0.60	-2.2
6,646,831	+		PFLU_RS29885	0.65	-3.3
6,646,831	+		PFLU_RS29885	0.65	-3.0
6,646,832	-		PFLU_RS29885	0.65	-0.7
6,646,832	-		PFLU_RS29885	0.65	-2.2
6,646,832	-		PFLU_RS29885	0.65	-2.7
6,646,832	-		PFLU_RS29885	0.65	-2.4
6,646,832	-		PFLU_RS29885	0.65	-2.2
6,646,905	-		PFLU_RS29885	0.73	-3.0
6,647,283	+				+1.3
6,647,284	-				-0.3
6,647,326	+				-0.4
6,647,327	-				-0.1
6,647,327	-				-1.1
6,647,327	-				-1.1
6,647,369	+				-0.7
6,647,369	+				+0.0
6,647,369	+				-2.6
6,647,369	+				+0.1
6,647,369	+				+0.3
6,647,369	+				+0.4
6,647,370	-				+0.4
6,647,370	-				+0.2
6,647,370	-				+0.9
6,647,370	-				-1.7
6,647,370	-				-0.7
6,647,370	-				-0.1
6,647,370	-				+0.3
6,647,370	-				+0.9
6,647,396	+				+1.0
6,647,439	+				+0.4
6,647,439	+				+1.2
6,647,439	+				-0.7
6,647,439	+				-0.2
6,647,439	+				+1.1
6,647,439	+				+0.9
6,647,440	-				+0.5
6,647,440	-				-0.7
6,647,440	-				-1.0
6,647,440	-				-0.4
6,647,455	+				-0.2
6,647,456	-				-3.0
6,647,510	+				+0.1
6,647,510	+				-0.5
6,647,510	+				+1.5
6,647,510	+				+0.8
6,647,510	+				+0.8
6,647,510	+				+0.5
6,647,510	+				+0.1
6,647,511	-				+0.6
6,647,511	-				-0.2
6,647,511	-				-0.8
6,647,511	-				-0.3
6,647,511	-				-0.1
6,647,511	-				-1.1
6,647,511	-				+0.2
6,647,519	-				-0.5
6,647,683	+		PFLU_RS29890	0.19	+0.5
6,647,683	+		PFLU_RS29890	0.19	+0.7
6,647,683	+		PFLU_RS29890	0.19	-0.4
6,647,683	+		PFLU_RS29890	0.19	+1.9
6,647,684	-		PFLU_RS29890	0.19	+1.2
6,647,684	-		PFLU_RS29890	0.19	+0.7
6,647,684	-		PFLU_RS29890	0.19	-0.3
6,647,684	-		PFLU_RS29890	0.19	-1.2
6,647,684	-		PFLU_RS29890	0.19	-0.1
6,647,905	+		PFLU_RS29890	0.45	-0.8
6,647,905	+		PFLU_RS29890	0.45	+0.4
6,647,905	+		PFLU_RS29890	0.45	+0.5
6,647,905	+		PFLU_RS29890	0.45	+1.1
6,647,905	+		PFLU_RS29890	0.45	+0.1
6,647,905	+		PFLU_RS29890	0.45	-0.3
6,647,905	+		PFLU_RS29890	0.45	+0.6
6,647,906	-		PFLU_RS29890	0.45	+0.3
6,647,906	-		PFLU_RS29890	0.45	+0.3
6,647,906	-		PFLU_RS29890	0.45	+0.6
6,647,983	+		PFLU_RS29890	0.54	+0.4
6,647,983	+		PFLU_RS29890	0.54	+1.2
6,647,983	+		PFLU_RS29890	0.54	-1.0
6,647,983	+		PFLU_RS29890	0.54	+1.6
6,647,983	+		PFLU_RS29890	0.54	+0.8
6,647,984	-		PFLU_RS29890	0.54	+0.2
6,647,984	-		PFLU_RS29890	0.54	+0.9
6,647,984	-		PFLU_RS29890	0.54	+0.2
6,647,984	-		PFLU_RS29890	0.54	-0.2
6,647,984	-		PFLU_RS29890	0.54	-0.4
6,647,984	-		PFLU_RS29890	0.54	+0.9
6,648,103	+		PFLU_RS29890	0.68	+1.0
6,648,104	-		PFLU_RS29890	0.68	+0.4
6,648,104	-		PFLU_RS29890	0.68	+0.8
6,648,343	-				-0.2
6,648,343	-				+1.4
6,648,366	-				-1.3
6,648,366	-				+0.4
6,648,366	-				+0.8
6,648,366	-				+0.4
6,648,401	-				+0.2
6,648,420	+				+0.4
6,648,420	+				-0.1
6,648,420	+				+0.8
6,648,420	+				-0.1
6,648,420	+				-1.2
6,648,420	+				+1.7
6,648,420	+				+0.6
6,648,420	+				+1.2
6,648,421	-				+0.2
6,648,421	-				+0.4
6,648,421	-				-1.1
6,648,421	-				+0.8
6,648,431	+				-0.4
6,648,432	-				-0.5
6,648,435	+				-1.0
6,648,435	+				+1.4
6,648,435	+				+1.0
6,648,436	-				+0.1
6,648,436	-				+0.4
6,648,436	-				-0.4
6,648,437	+				+0.3
6,648,437	+				-0.0
6,648,440	+				+0.4
6,648,476	+				-0.2
6,648,477	-				-1.2
6,648,503	-				-0.7
6,648,519	+				-1.4
6,648,520	-				-0.9
6,648,520	-				-0.2
6,648,520	-				-0.4
6,648,615	+				-0.3
6,648,615	+				-0.3
6,648,615	+				-0.3
6,648,616	-				-0.0
6,648,616	-				-0.4
6,648,721	+				+0.2
6,648,772	+				+0.8
6,648,773	-				+0.5
6,648,795	+				+1.4
6,648,795	+				-0.2
6,648,795	+				+1.2
6,648,795	+				-0.9
6,648,796	-				+0.5
6,648,796	-				+0.2
6,648,796	-				-0.0
6,648,796	-				-0.1
6,648,796	-				+0.5
6,648,809	-				-0.3
6,648,819	+				+0.6
6,648,819	+				-0.0
6,648,819	+				+0.5
6,648,819	+				+0.0
6,648,834	+		PFLU_RS29895	0.10	+0.0
6,648,923	+		PFLU_RS29895	0.13	+0.9
6,648,923	+		PFLU_RS29895	0.13	-0.1
6,648,923	+		PFLU_RS29895	0.13	+0.9
6,648,923	+		PFLU_RS29895	0.13	+0.8
6,648,924	-		PFLU_RS29895	0.13	-0.5
6,648,924	-		PFLU_RS29895	0.13	-0.5
6,648,924	-		PFLU_RS29895	0.13	+0.3
6,648,955	-		PFLU_RS29895	0.14	-0.4
6,649,247	+		PFLU_RS29895	0.25	+0.5
6,649,247	+		PFLU_RS29895	0.25	-0.2
6,649,247	+		PFLU_RS29895	0.25	-2.1
6,649,247	+		PFLU_RS29895	0.25	-0.1
6,649,247	+		PFLU_RS29895	0.25	-0.3
6,649,247	+		PFLU_RS29895	0.25	+1.9
6,649,247	+		PFLU_RS29895	0.25	+0.7
6,649,247	+		PFLU_RS29895	0.25	+0.3
6,649,247	+		PFLU_RS29895	0.25	-0.7
6,649,248	-		PFLU_RS29895	0.25	+0.9
6,649,248	-		PFLU_RS29895	0.25	-0.6
6,649,248	-		PFLU_RS29895	0.25	+0.8
6,649,248	-		PFLU_RS29895	0.25	+0.4
6,649,248	-		PFLU_RS29895	0.25	-0.0
6,649,248	-		PFLU_RS29895	0.25	+0.2
6,649,248	-		PFLU_RS29895	0.25	-1.8
6,649,248	-		PFLU_RS29895	0.25	+0.4
6,649,260	+		PFLU_RS29895	0.25	+1.8
6,649,260	+		PFLU_RS29895	0.25	-0.6
6,649,260	+		PFLU_RS29895	0.25	+0.8
6,649,260	+		PFLU_RS29895	0.25	+0.8
6,649,260	+		PFLU_RS29895	0.25	-0.0
6,649,261	-		PFLU_RS29895	0.25	-0.7
6,649,261	-		PFLU_RS29895	0.25	-0.0
6,649,261	-		PFLU_RS29895	0.25	-1.1
6,649,261	-		PFLU_RS29895	0.25	+0.5
6,649,261	-		PFLU_RS29895	0.25	+0.6
6,649,261	-		PFLU_RS29895	0.25	+0.1
6,649,353	+		PFLU_RS29895	0.28	+1.2
6,649,354	-		PFLU_RS29895	0.28	+0.8
6,649,354	-		PFLU_RS29895	0.28	+0.5
6,649,366	+		PFLU_RS29895	0.29	-1.9