Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS22250

Experiment: D,L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Lactate (C)
5,002,120	+		PFLU_RS22245	0.34	-0.2
5,002,120	+		PFLU_RS22245	0.34	+0.7
5,002,181	+		PFLU_RS22245	0.38	-0.3
5,002,181	+		PFLU_RS22245	0.38	-0.5
5,002,181	+		PFLU_RS22245	0.38	+0.7
5,002,182	-		PFLU_RS22245	0.38	+0.3
5,002,190	-		PFLU_RS22245	0.39	+0.4
5,002,217	+		PFLU_RS22245	0.41	-0.3
5,002,217	+		PFLU_RS22245	0.41	+1.0
5,002,218	-		PFLU_RS22245	0.41	+0.3
5,002,218	-		PFLU_RS22245	0.41	-1.4
5,002,218	-		PFLU_RS22245	0.41	-1.5
5,002,218	-		PFLU_RS22245	0.41	+1.7
5,002,226	+		PFLU_RS22245	0.42	+1.0
5,002,227	-		PFLU_RS22245	0.42	-0.6
5,002,227	-		PFLU_RS22245	0.42	+0.8
5,002,227	-		PFLU_RS22245	0.42	-1.5
5,002,346	+		PFLU_RS22245	0.50	-0.6
5,002,346	+		PFLU_RS22245	0.50	-1.0
5,002,346	+		PFLU_RS22245	0.50	+0.6
5,002,346	+		PFLU_RS22245	0.50	+0.4
5,002,346	+		PFLU_RS22245	0.50	+0.7
5,002,346	+		PFLU_RS22245	0.50	-0.1
5,002,346	+		PFLU_RS22245	0.50	+0.9
5,002,346	+		PFLU_RS22245	0.50	+0.1
5,002,346	+		PFLU_RS22245	0.50	-0.2
5,002,346	+		PFLU_RS22245	0.50	-0.1
5,002,346	+		PFLU_RS22245	0.50	-0.6
5,002,346	+		PFLU_RS22245	0.50	-1.6
5,002,346	+		PFLU_RS22245	0.50	-0.3
5,002,346	+		PFLU_RS22245	0.50	-1.9
5,002,346	+		PFLU_RS22245	0.50	+1.1
5,002,347	-		PFLU_RS22245	0.51	+1.5
5,002,347	-		PFLU_RS22245	0.51	-1.7
5,002,347	-		PFLU_RS22245	0.51	+0.2
5,002,347	-		PFLU_RS22245	0.51	+0.8
5,002,347	-		PFLU_RS22245	0.51	+0.5
5,002,347	-		PFLU_RS22245	0.51	-0.6
5,002,347	-		PFLU_RS22245	0.51	-1.3
5,002,347	-		PFLU_RS22245	0.51	-0.1
5,002,347	-		PFLU_RS22245	0.51	+1.0
5,002,347	-		PFLU_RS22245	0.51	-1.9
5,002,397	+		PFLU_RS22245	0.54	+1.2
5,002,397	+		PFLU_RS22245	0.54	+2.0
5,002,397	+		PFLU_RS22245	0.54	+0.2
5,002,397	+		PFLU_RS22245	0.54	+1.8
5,002,397	+		PFLU_RS22245	0.54	-0.6
5,002,397	+		PFLU_RS22245	0.54	+0.5
5,002,397	+		PFLU_RS22245	0.54	+0.0
5,002,397	+		PFLU_RS22245	0.54	+0.3
5,002,397	+		PFLU_RS22245	0.54	-1.4
5,002,397	+		PFLU_RS22245	0.54	+0.4
5,002,397	+		PFLU_RS22245	0.54	+0.3
5,002,397	+		PFLU_RS22245	0.54	+0.9
5,002,397	+		PFLU_RS22245	0.54	+1.2
5,002,398	-		PFLU_RS22245	0.54	+0.8
5,002,398	-		PFLU_RS22245	0.54	-0.3
5,002,398	-		PFLU_RS22245	0.54	+0.1
5,002,398	-		PFLU_RS22245	0.54	-1.6
5,002,398	-		PFLU_RS22245	0.54	-0.6
5,002,398	-		PFLU_RS22245	0.54	+0.1
5,002,436	+		PFLU_RS22245	0.57	+0.4
5,002,526	+		PFLU_RS22245	0.64	-0.2
5,002,526	+		PFLU_RS22245	0.64	-0.3
5,002,526	+		PFLU_RS22245	0.64	-1.2
5,002,526	+		PFLU_RS22245	0.64	+1.1
5,002,526	+		PFLU_RS22245	0.64	-0.3
5,002,526	+		PFLU_RS22245	0.64	+0.3
5,002,526	+		PFLU_RS22245	0.64	-0.7
5,002,526	+		PFLU_RS22245	0.64	-0.2
5,002,526	+		PFLU_RS22245	0.64	+0.4
5,002,526	+		PFLU_RS22245	0.64	+0.6
5,002,527	-		PFLU_RS22245	0.64	+0.4
5,002,527	-		PFLU_RS22245	0.64	-0.2
5,002,527	-		PFLU_RS22245	0.64	+0.7
5,002,527	-		PFLU_RS22245	0.64	-0.9
5,002,527	-		PFLU_RS22245	0.64	+0.5
5,002,527	-		PFLU_RS22245	0.64	+0.6
5,002,527	-		PFLU_RS22245	0.64	+0.0
5,002,527	-		PFLU_RS22245	0.64	+1.1
5,002,532	+		PFLU_RS22245	0.64	+1.2
5,002,581	+		PFLU_RS22245	0.68	-1.3
5,002,581	+		PFLU_RS22245	0.68	+0.5
5,002,582	-		PFLU_RS22245	0.68	+0.6
5,002,582	-		PFLU_RS22245	0.68	-0.0
5,002,582	-		PFLU_RS22245	0.68	-0.1
5,002,582	-		PFLU_RS22245	0.68	-0.8
5,002,625	+		PFLU_RS22245	0.71	+1.4
5,002,626	-		PFLU_RS22245	0.71	-0.5
5,002,626	-		PFLU_RS22245	0.71	+0.3
5,002,626	-		PFLU_RS22245	0.71	+1.0
5,002,679	+		PFLU_RS22245	0.75	+0.4
5,002,688	+		PFLU_RS22245	0.76	-0.8
5,002,688	+		PFLU_RS22245	0.76	+1.2
5,002,689	-		PFLU_RS22245	0.76	-0.4
5,002,692	+		PFLU_RS22245	0.76	+0.4
5,002,692	+		PFLU_RS22245	0.76	+0.5
5,002,693	-		PFLU_RS22245	0.76	+0.6
5,002,775	+		PFLU_RS22245	0.82	-1.0
5,002,775	+		PFLU_RS22245	0.82	-0.6
5,002,775	+		PFLU_RS22245	0.82	+0.3
5,002,776	-		PFLU_RS22245	0.82	-0.1
5,002,776	-		PFLU_RS22245	0.82	+0.5
5,002,776	-		PFLU_RS22245	0.82	-1.7
5,002,776	-		PFLU_RS22245	0.82	+0.1
5,002,776	-		PFLU_RS22245	0.82	+0.8
5,002,782	-		PFLU_RS22245	0.83	+1.5
5,002,782	-		PFLU_RS22245	0.83	+0.7
5,002,782	-		PFLU_RS22245	0.83	+1.4
5,002,791	+		PFLU_RS22245	0.84	+0.4
5,002,791	+		PFLU_RS22245	0.84	-0.4
5,002,819	+		PFLU_RS22245	0.86	-1.5
5,002,880	+				+1.2
5,002,916	+				+0.1
5,002,916	+				-0.7
5,002,916	+				-1.5
5,002,916	+				+0.4
5,002,916	+				+0.5
5,002,916	+				-0.5
5,002,916	+				-0.1
5,002,917	-				+1.5
5,002,917	-				+0.1
5,002,917	-				+0.3
5,002,917	-				-0.2
5,002,917	-				+0.5
5,002,917	-				+0.5
5,002,940	+				+0.7
5,002,940	+				+0.5
5,002,940	+				+0.5
5,002,941	-				-1.8
5,002,941	-				+0.0
5,002,941	-				-0.3
5,002,941	-				-0.2
5,002,941	-				-0.2
5,002,941	-				-1.2
5,002,941	-				-1.9
5,002,941	-				+0.4
5,002,941	-				+0.4
5,002,941	-				-0.2
5,002,941	-				-0.6
5,003,010	-				-1.3
5,003,010	-				+0.6
5,003,024	+				-1.6
5,003,024	+				-0.9
5,003,024	+				-0.2
5,003,024	+				+0.2
5,003,024	+				-0.8
5,003,025	-				+0.1
5,003,119	+				-0.4
5,003,119	+				+0.7
5,003,323	+		PFLU_RS22250	0.83	+0.2
5,003,324	-		PFLU_RS22250	0.84	-1.2
5,003,324	-		PFLU_RS22250	0.84	-0.5
5,003,324	-		PFLU_RS22250	0.84	+0.2
5,003,324	-		PFLU_RS22250	0.84	-0.4
5,003,351	+				+1.0
5,003,351	+				+1.9
5,003,352	-				+0.3
5,003,352	-				+0.5
5,003,404	+				+0.9
5,003,404	+				-0.1
5,003,461	+		PFLU_RS22255	0.17	+0.4
5,003,542	+		PFLU_RS22255	0.30	-1.5
5,003,542	+		PFLU_RS22255	0.30	-0.0
5,003,542	+		PFLU_RS22255	0.30	+0.4
5,003,542	+		PFLU_RS22255	0.30	+0.7
5,003,542	+		PFLU_RS22255	0.30	-0.7
5,003,542	+		PFLU_RS22255	0.30	+0.9
5,003,542	+		PFLU_RS22255	0.30	+0.8
5,003,542	+		PFLU_RS22255	0.30	+0.2
5,003,542	+		PFLU_RS22255	0.30	-0.1
5,003,542	+		PFLU_RS22255	0.30	+0.0
5,003,542	+		PFLU_RS22255	0.30	+0.7
5,003,542	+		PFLU_RS22255	0.30	-0.2
5,003,542	+		PFLU_RS22255	0.30	+0.2
5,003,542	+		PFLU_RS22255	0.30	+1.5
5,003,542	+		PFLU_RS22255	0.30	+0.6
5,003,542	+		PFLU_RS22255	0.30	-0.4
5,003,543	-		PFLU_RS22255	0.30	+0.6
5,003,543	-		PFLU_RS22255	0.30	+0.2
5,003,543	-		PFLU_RS22255	0.30	-1.0
5,003,543	-		PFLU_RS22255	0.30	+0.7
5,003,543	-		PFLU_RS22255	0.30	+1.0
5,003,543	-		PFLU_RS22255	0.30	-0.3
5,003,543	-		PFLU_RS22255	0.30	-0.5
5,003,543	-		PFLU_RS22255	0.30	-0.5
5,003,543	-		PFLU_RS22255	0.30	+0.9
5,003,543	-		PFLU_RS22255	0.30	-0.9
5,003,543	-		PFLU_RS22255	0.30	+0.2
5,003,543	-		PFLU_RS22255	0.30	-0.3
5,003,543	-		PFLU_RS22255	0.30	+0.3
5,003,543	-		PFLU_RS22255	0.30	-1.6
5,003,543	-		PFLU_RS22255	0.30	+0.5
5,003,718	+		PFLU_RS22255	0.59	-0.7
5,003,719	-		PFLU_RS22255	0.59	+0.1
5,003,797	+		PFLU_RS22255	0.72	-0.8
5,003,797	+		PFLU_RS22255	0.72	+1.3
5,003,797	+		PFLU_RS22255	0.72	-0.0
5,003,797	+		PFLU_RS22255	0.72	+0.7
5,003,798	-		PFLU_RS22255	0.72	+0.2
5,003,798	-		PFLU_RS22255	0.72	-0.5
5,003,798	-		PFLU_RS22255	0.72	+1.2
5,003,802	-		PFLU_RS22255	0.72	+0.5
5,003,802	-		PFLU_RS22255	0.72	+0.0
5,003,802	-		PFLU_RS22255	0.72	+0.8
5,003,862	+		PFLU_RS22255	0.82	+1.5
5,003,862	+		PFLU_RS22255	0.82	+0.7
5,003,863	-		PFLU_RS22255	0.82	+0.3
5,003,863	-		PFLU_RS22255	0.82	-1.9
5,003,863	-		PFLU_RS22255	0.82	-0.5
5,003,889	+		PFLU_RS22255	0.87	+0.7
5,003,889	+		PFLU_RS22255	0.87	+0.5
5,003,890	-		PFLU_RS22255	0.87	-0.2
5,003,890	-		PFLU_RS22255	0.87	+0.8
5,003,910	+				-1.2
5,003,911	-				-0.5
5,003,911	-				+0.8
5,003,975	+				+1.1
5,003,976	-				+0.5
5,004,045	+		PFLU_RS31775	0.41	+0.8
5,004,045	+		PFLU_RS31775	0.41	+0.7
5,004,045	+		PFLU_RS31775	0.41	+0.2
5,004,045	+		PFLU_RS31775	0.41	-0.6
5,004,045	+		PFLU_RS31775	0.41	+0.5
5,004,045	+		PFLU_RS31775	0.41	-1.3
5,004,046	-		PFLU_RS31775	0.42	-0.1
5,004,046	-		PFLU_RS31775	0.42	-1.2
5,004,046	-		PFLU_RS31775	0.42	+0.6
5,004,046	-		PFLU_RS31775	0.42	+0.2
5,004,046	-		PFLU_RS31775	0.42	+1.8
5,004,046	-		PFLU_RS31775	0.42	+0.5
5,004,068	+		PFLU_RS31775	0.54	-2.2
5,004,150	+				+1.0
5,004,150	+				+1.7
5,004,207	+				+0.9
5,004,208	-				-0.5
5,004,244	+		PFLU_RS22260	0.11	-1.6
5,004,245	-		PFLU_RS22260	0.11	-0.8
5,004,252	+		PFLU_RS22260	0.12	-0.3
5,004,252	+		PFLU_RS22260	0.12	-2.0
5,004,252	+		PFLU_RS22260	0.12	+1.1
5,004,252	+		PFLU_RS22260	0.12	-0.5
5,004,253	-		PFLU_RS22260	0.12	-0.5
5,004,253	-		PFLU_RS22260	0.12	+0.3
5,004,257	-		PFLU_RS22260	0.13	+0.7