Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS16995

Experiment: D,L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Lactate (C)
3,852,807	-		PFLU_RS16990	0.25	+0.9
3,852,974	-		PFLU_RS16990	0.38	+1.0
3,852,974	-		PFLU_RS16990	0.38	-0.2
3,853,021	+		PFLU_RS16990	0.42	-0.3
3,853,021	+		PFLU_RS16990	0.42	+1.1
3,853,021	+		PFLU_RS16990	0.42	-0.3
3,853,021	+		PFLU_RS16990	0.42	+1.1
3,853,021	+		PFLU_RS16990	0.42	+0.5
3,853,021	+		PFLU_RS16990	0.42	+1.0
3,853,021	+		PFLU_RS16990	0.42	+0.6
3,853,021	+		PFLU_RS16990	0.42	+0.9
3,853,021	+		PFLU_RS16990	0.42	-0.9
3,853,021	+		PFLU_RS16990	0.42	+0.3
3,853,021	+		PFLU_RS16990	0.42	-0.4
3,853,021	+		PFLU_RS16990	0.42	-0.7
3,853,021	+		PFLU_RS16990	0.42	-0.2
3,853,021	+		PFLU_RS16990	0.42	-0.2
3,853,022	-		PFLU_RS16990	0.42	+0.1
3,853,022	-		PFLU_RS16990	0.42	-1.6
3,853,022	-		PFLU_RS16990	0.42	+1.4
3,853,022	-		PFLU_RS16990	0.42	-0.1
3,853,022	-		PFLU_RS16990	0.42	-0.0
3,853,022	-		PFLU_RS16990	0.42	+0.1
3,853,022	-		PFLU_RS16990	0.42	-0.9
3,853,022	-		PFLU_RS16990	0.42	+1.3
3,853,022	-		PFLU_RS16990	0.42	-0.1
3,853,022	-		PFLU_RS16990	0.42	+0.8
3,853,022	-		PFLU_RS16990	0.42	-2.1
3,853,022	-		PFLU_RS16990	0.42	+0.7
3,853,022	-		PFLU_RS16990	0.42	+0.2
3,853,283	+		PFLU_RS16990	0.62	+0.0
3,853,284	-		PFLU_RS16990	0.62	-0.4
3,853,284	-		PFLU_RS16990	0.62	-1.7
3,853,284	-		PFLU_RS16990	0.62	-0.3
3,853,321	+		PFLU_RS16990	0.65	+0.3
3,853,321	+		PFLU_RS16990	0.65	+0.1
3,853,357	+		PFLU_RS16990	0.68	+1.2
3,853,357	+		PFLU_RS16990	0.68	+1.2
3,853,358	-		PFLU_RS16990	0.68	-0.5
3,853,369	+		PFLU_RS16990	0.69	+1.2
3,853,370	-		PFLU_RS16990	0.69	+1.1
3,853,370	-		PFLU_RS16990	0.69	+0.2
3,853,401	-		PFLU_RS16990	0.72	+0.6
3,853,403	+		PFLU_RS16990	0.72	+1.3
3,853,403	+		PFLU_RS16990	0.72	-0.1
3,853,404	-		PFLU_RS16990	0.72	+1.5
3,853,404	-		PFLU_RS16990	0.72	+0.8
3,853,404	-		PFLU_RS16990	0.72	-0.5
3,853,458	+		PFLU_RS16990	0.76	+0.7
3,853,459	-		PFLU_RS16990	0.76	-0.4
3,853,621	+		PFLU_RS16990	0.89	+0.3
3,853,651	+				+0.8
3,853,651	+				+0.5
3,853,651	+				-0.8
3,853,651	+				-0.4
3,853,651	+				+0.3
3,853,651	+				+0.7
3,853,651	+				-0.0
3,853,652	-				+1.3
3,853,652	-				+0.0
3,853,690	+				+1.5
3,853,690	+				+0.1
3,853,690	+				+0.3
3,853,690	+				-0.7
3,853,690	+				+0.7
3,853,690	+				+0.1
3,853,690	+				+1.3
3,853,690	+				+0.3
3,853,690	+				-0.7
3,853,690	+				-2.0
3,853,690	+				-0.6
3,853,690	+				+0.4
3,853,691	-				+0.8
3,853,691	-				-0.1
3,853,691	-				+0.6
3,853,691	-				-0.1
3,853,691	-				-0.6
3,853,738	+				-0.8
3,853,738	+				-0.3
3,853,738	+				-0.3
3,853,738	+				+0.8
3,853,738	+				+0.2
3,853,738	+				-0.0
3,853,739	-				+0.3
3,853,739	-				-0.7
3,853,739	-				-0.8
3,853,750	+				-0.0
3,853,750	+				-0.9
3,853,750	+				+0.1
3,853,750	+				+0.1
3,853,750	+				-0.7
3,853,750	+				-0.8
3,853,751	-				-0.0
3,853,751	-				+0.8
3,853,751	-				+0.2
3,853,765	+				-0.2
3,853,765	+				+0.2
3,853,765	+				+0.0
3,853,766	-				-0.8
3,853,766	-				+1.1
3,853,795	+				+0.5
3,853,795	+				+0.1
3,853,796	-				-0.4
3,853,796	-				+0.3
3,853,841	+		PFLU_RS16995	0.11	+0.4
3,853,842	-		PFLU_RS16995	0.11	-1.0
3,853,873	+		PFLU_RS16995	0.15	+0.4
3,853,873	+		PFLU_RS16995	0.15	-0.8
3,853,873	+		PFLU_RS16995	0.15	+0.9
3,853,873	+		PFLU_RS16995	0.15	-2.5
3,853,873	+		PFLU_RS16995	0.15	-0.9
3,853,873	+		PFLU_RS16995	0.15	+1.0
3,853,873	+		PFLU_RS16995	0.15	+1.2
3,853,873	+		PFLU_RS16995	0.15	-0.9
3,853,874	-		PFLU_RS16995	0.16	+0.2
3,853,874	-		PFLU_RS16995	0.16	+0.4
3,853,874	-		PFLU_RS16995	0.16	+0.6
3,853,874	-		PFLU_RS16995	0.16	-2.2
3,853,874	-		PFLU_RS16995	0.16	+0.6
3,853,874	-		PFLU_RS16995	0.16	-0.3
3,853,874	-		PFLU_RS16995	0.16	+0.5
3,853,874	-		PFLU_RS16995	0.16	+1.0
3,853,994	+		PFLU_RS16995	0.32	+0.2
3,854,164	+		PFLU_RS16995	0.56	+0.4
3,854,164	+		PFLU_RS16995	0.56	+0.3
3,854,164	+		PFLU_RS16995	0.56	-0.4
3,854,165	-		PFLU_RS16995	0.57	-0.8
3,854,165	-		PFLU_RS16995	0.57	-0.6
3,854,165	-		PFLU_RS16995	0.57	-0.8
3,854,196	-		PFLU_RS16995	0.61	+0.1
3,854,196	-		PFLU_RS16995	0.61	-1.1
3,854,307	+		PFLU_RS16995	0.77	+0.5
3,854,308	-		PFLU_RS16995	0.77	+0.3
3,854,308	-		PFLU_RS16995	0.77	+0.7
3,854,308	-		PFLU_RS16995	0.77	+0.2
3,854,472	-				-1.1
3,854,511	+				-1.6
3,854,511	+				+0.3
3,854,511	+				+0.1
3,854,511	+				-0.7
3,854,513	+				-0.6
3,854,513	+				-0.1
3,854,513	+				-0.2
3,854,513	+				+0.3
3,854,513	+				-1.2
3,854,513	+				-0.0
3,854,513	+				+1.3
3,854,513	+				+1.1
3,854,513	+				-0.9
3,854,513	+				+0.4
3,854,513	+				-0.0
3,854,513	+				-0.8
3,854,513	+				+0.7
3,854,513	+				-0.7
3,854,513	+				-0.4
3,854,513	+				-0.5
3,854,513	+				+1.1
3,854,513	+				-0.4
3,854,513	+				-0.7
3,854,514	-				-0.9
3,854,514	-				-1.4
3,854,514	-				-0.5
3,854,514	-				+0.1
3,854,514	-				+0.0
3,854,514	-				-0.2
3,854,514	-				+0.2
3,854,514	-				-0.4
3,854,514	-				-0.4
3,854,514	-				+0.4
3,854,514	-				-0.7
3,854,514	-				-0.2
3,854,514	-				+0.8
3,854,514	-				+1.1
3,854,514	-				+1.3
3,854,514	-				+0.8
3,854,533	+				-2.0
3,854,534	-				-0.8
3,854,576	-				+0.5
3,854,592	+				+0.7
3,854,592	+				-0.2
3,854,592	+				+0.8
3,854,592	+				-0.4
3,854,593	-				+0.0
3,854,593	-				+0.5
3,854,593	-				+0.4
3,854,593	-				+0.3
3,854,593	-				+0.4
3,854,593	-				+0.2
3,854,593	-				-1.1
3,854,616	+				-0.3
3,854,616	+				+1.0
3,854,616	+				+0.8
3,854,616	+				-1.3
3,854,617	-				+0.3
3,854,617	-				-2.4
3,854,617	-				+0.7
3,854,617	-				+0.7
3,854,617	-				-1.3
3,854,617	-				+0.1
3,854,617	-				+0.2
3,854,617	-				-1.2
3,854,628	+				-0.2
3,854,628	+				+1.3
3,854,628	+				+0.9
3,854,629	-				+0.8
3,854,629	-				+0.4
3,854,629	-				-0.4
3,854,629	-				+0.4
3,854,641	+				-0.8
3,854,701	-				+0.3
3,854,845	-		PFLU_RS17000	0.18	+0.4
3,854,845	-		PFLU_RS17000	0.18	+0.5
3,854,910	+		PFLU_RS17000	0.23	-0.2
3,854,911	-		PFLU_RS17000	0.23	-0.6
3,854,911	-		PFLU_RS17000	0.23	-0.4
3,854,915	-		PFLU_RS17000	0.24	-0.7
3,854,931	-		PFLU_RS17000	0.25	-0.2
3,854,994	+		PFLU_RS17000	0.30	+0.8
3,854,995	-		PFLU_RS17000	0.30	+1.6
3,854,995	-		PFLU_RS17000	0.30	-0.2
3,854,995	-		PFLU_RS17000	0.30	+1.8
3,855,007	+		PFLU_RS17000	0.32	+0.1
3,855,007	+		PFLU_RS17000	0.32	-0.0
3,855,007	+		PFLU_RS17000	0.32	+0.4
3,855,007	+		PFLU_RS17000	0.32	+0.6
3,855,008	-		PFLU_RS17000	0.32	+0.3
3,855,013	+		PFLU_RS17000	0.32	-1.1
3,855,013	+		PFLU_RS17000	0.32	+1.0
3,855,013	+		PFLU_RS17000	0.32	+0.9
3,855,013	+		PFLU_RS17000	0.32	-0.2
3,855,013	+		PFLU_RS17000	0.32	-0.1
3,855,013	+		PFLU_RS17000	0.32	-0.3
3,855,014	-		PFLU_RS17000	0.32	+0.9
3,855,014	-		PFLU_RS17000	0.32	-0.9
3,855,014	-		PFLU_RS17000	0.32	-0.3
3,855,014	-		PFLU_RS17000	0.32	+0.3
3,855,031	+		PFLU_RS17000	0.34	-0.8
3,855,032	-		PFLU_RS17000	0.34	-0.7
3,855,032	-		PFLU_RS17000	0.34	-3.0
3,855,098	+		PFLU_RS17000	0.39	+1.3
3,855,219	+		PFLU_RS17000	0.49	+0.8
3,855,219	+		PFLU_RS17000	0.49	+0.9
3,855,219	+		PFLU_RS17000	0.49	+0.2
3,855,220	-		PFLU_RS17000	0.49	-0.0
3,855,255	+		PFLU_RS17000	0.52	-0.0
3,855,256	-		PFLU_RS17000	0.52	-0.5
3,855,382	+		PFLU_RS17000	0.63	+1.0
3,855,382	+		PFLU_RS17000	0.63	+0.1
3,855,383	-		PFLU_RS17000	0.63	-2.4
3,855,383	-		PFLU_RS17000	0.63	-0.4