Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS13805

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS13800 and PFLU_RS13805 are separated by 48 nucleotidesPFLU_RS13805 and PFLU_RS13810 are separated by 237 nucleotidesPFLU_RS13810 and PFLU_RS13815 overlap by 17 nucleotidesPFLU_RS13815 and PFLU_RS13820 are separated by 69 nucleotides PFLU_RS13800: PFLU_RS13800 - DNA cytosine methyltransferase, at 3,114,565 to 3,116,478 _RS13800 PFLU_RS13805: PFLU_RS13805 - hypothetical protein, at 3,116,527 to 3,117,210 _RS13805 PFLU_RS13810: PFLU_RS13810 - hypothetical protein, at 3,117,448 to 3,117,762 _RS13810 PFLU_RS13815: PFLU_RS13815 - hypothetical protein, at 3,117,746 to 3,118,090 _RS13815 PFLU_RS13820: PFLU_RS13820 - hypothetical protein, at 3,118,160 to 3,118,630 _RS13820 Position (kb) 3116 3117 3118Strain fitness (log2 ratio) -2 -1 0 1 2at 3115.606 kb on + strand, within PFLU_RS13800at 3115.623 kb on + strand, within PFLU_RS13800at 3115.623 kb on + strand, within PFLU_RS13800at 3115.623 kb on + strand, within PFLU_RS13800at 3115.623 kb on + strand, within PFLU_RS13800at 3115.624 kb on - strand, within PFLU_RS13800at 3115.624 kb on - strand, within PFLU_RS13800at 3115.624 kb on - strand, within PFLU_RS13800at 3115.809 kb on - strand, within PFLU_RS13800at 3115.872 kb on + strand, within PFLU_RS13800at 3115.872 kb on + strand, within PFLU_RS13800at 3115.872 kb on + strand, within PFLU_RS13800at 3115.872 kb on + strand, within PFLU_RS13800at 3115.872 kb on + strand, within PFLU_RS13800at 3115.872 kb on + strand, within PFLU_RS13800at 3115.872 kb on + strand, within PFLU_RS13800at 3115.872 kb on + strand, within PFLU_RS13800at 3115.872 kb on + strand, within PFLU_RS13800at 3115.872 kb on + strand, within PFLU_RS13800at 3115.873 kb on - strand, within PFLU_RS13800at 3115.873 kb on - strand, within PFLU_RS13800at 3115.873 kb on - strand, within PFLU_RS13800at 3115.873 kb on - strand, within PFLU_RS13800at 3115.873 kb on - strand, within PFLU_RS13800at 3115.873 kb on - strand, within PFLU_RS13800at 3115.873 kb on - strand, within PFLU_RS13800at 3115.874 kb on + strand, within PFLU_RS13800at 3115.874 kb on + strand, within PFLU_RS13800at 3115.874 kb on + strand, within PFLU_RS13800at 3115.874 kb on + strand, within PFLU_RS13800at 3115.875 kb on - strand, within PFLU_RS13800at 3115.875 kb on - strand, within PFLU_RS13800at 3116.038 kb on + strand, within PFLU_RS13800at 3116.038 kb on + strand, within PFLU_RS13800at 3116.038 kb on + strand, within PFLU_RS13800at 3116.038 kb on + strand, within PFLU_RS13800at 3116.038 kb on + strand, within PFLU_RS13800at 3116.038 kb on + strand, within PFLU_RS13800at 3116.039 kb on - strand, within PFLU_RS13800at 3116.039 kb on - strand, within PFLU_RS13800at 3116.039 kb on - strand, within PFLU_RS13800at 3116.039 kb on - strand, within PFLU_RS13800at 3116.267 kb on + strand, within PFLU_RS13800at 3116.267 kb on + strand, within PFLU_RS13800at 3116.267 kb on + strand, within PFLU_RS13800at 3116.267 kb on + strand, within PFLU_RS13800at 3116.267 kb on + strand, within PFLU_RS13800at 3116.267 kb on + strand, within PFLU_RS13800at 3116.267 kb on + strand, within PFLU_RS13800at 3116.267 kb on + strand, within PFLU_RS13800at 3116.267 kb on + strand, within PFLU_RS13800at 3116.268 kb on - strand, within PFLU_RS13800at 3116.268 kb on - strand, within PFLU_RS13800at 3116.478 kb on + strandat 3116.478 kb on + strandat 3116.478 kb on + strandat 3116.495 kb on + strandat 3116.495 kb on + strandat 3116.495 kb on + strandat 3116.495 kb on + strandat 3116.495 kb on + strandat 3116.496 kb on - strandat 3116.496 kb on - strandat 3116.496 kb on - strandat 3116.496 kb on - strandat 3116.496 kb on - strandat 3116.496 kb on - strandat 3116.496 kb on - strandat 3116.498 kb on - strandat 3116.498 kb on - strandat 3116.509 kb on - strandat 3116.557 kb on + strandat 3116.559 kb on + strandat 3116.583 kb on + strandat 3116.584 kb on - strandat 3116.651 kb on - strand, within PFLU_RS13805at 3116.712 kb on + strand, within PFLU_RS13805at 3116.713 kb on - strand, within PFLU_RS13805at 3116.713 kb on - strand, within PFLU_RS13805at 3116.720 kb on + strand, within PFLU_RS13805at 3116.851 kb on - strand, within PFLU_RS13805at 3116.866 kb on - strand, within PFLU_RS13805at 3116.866 kb on - strand, within PFLU_RS13805at 3116.904 kb on + strand, within PFLU_RS13805at 3116.909 kb on + strand, within PFLU_RS13805at 3116.909 kb on + strand, within PFLU_RS13805at 3116.910 kb on - strand, within PFLU_RS13805at 3116.910 kb on - strand, within PFLU_RS13805at 3116.910 kb on - strand, within PFLU_RS13805at 3116.910 kb on - strand, within PFLU_RS13805at 3116.910 kb on - strand, within PFLU_RS13805at 3116.910 kb on - strand, within PFLU_RS13805at 3116.910 kb on - strand, within PFLU_RS13805at 3116.910 kb on - strand, within PFLU_RS13805at 3116.951 kb on - strand, within PFLU_RS13805at 3116.954 kb on + strand, within PFLU_RS13805at 3116.954 kb on + strand, within PFLU_RS13805at 3116.955 kb on - strand, within PFLU_RS13805at 3116.955 kb on - strand, within PFLU_RS13805at 3116.955 kb on - strand, within PFLU_RS13805at 3116.972 kb on + strand, within PFLU_RS13805at 3116.972 kb on + strand, within PFLU_RS13805at 3116.973 kb on - strand, within PFLU_RS13805at 3116.975 kb on + strand, within PFLU_RS13805at 3116.975 kb on + strand, within PFLU_RS13805at 3116.975 kb on + strand, within PFLU_RS13805at 3116.975 kb on + strand, within PFLU_RS13805at 3117.012 kb on + strand, within PFLU_RS13805at 3117.058 kb on - strand, within PFLU_RS13805at 3117.141 kb on + strand, within PFLU_RS13805at 3117.142 kb on - strandat 3117.153 kb on + strandat 3117.153 kb on + strandat 3117.153 kb on + strandat 3117.153 kb on + strandat 3117.153 kb on + strandat 3117.153 kb on + strandat 3117.153 kb on + strandat 3117.153 kb on + strandat 3117.153 kb on + strandat 3117.153 kb on + strandat 3117.153 kb on + strandat 3117.153 kb on + strandat 3117.153 kb on + strandat 3117.153 kb on + strandat 3117.153 kb on + strandat 3117.154 kb on - strandat 3117.154 kb on - strandat 3117.154 kb on - strandat 3117.154 kb on - strandat 3117.154 kb on - strandat 3117.154 kb on - strandat 3117.154 kb on - strandat 3117.208 kb on + strandat 3117.209 kb on - strandat 3117.209 kb on - strandat 3117.209 kb on - strandat 3117.222 kb on + strandat 3117.222 kb on + strandat 3117.222 kb on + strandat 3117.223 kb on - strandat 3117.223 kb on - strandat 3117.288 kb on + strandat 3117.288 kb on + strandat 3117.316 kb on + strandat 3117.316 kb on + strandat 3117.338 kb on - strandat 3117.398 kb on - strandat 3117.398 kb on - strandat 3117.401 kb on - strandat 3117.401 kb on - strandat 3117.537 kb on + strand, within PFLU_RS13810at 3117.537 kb on + strand, within PFLU_RS13810at 3117.538 kb on - strand, within PFLU_RS13810at 3117.543 kb on + strand, within PFLU_RS13810at 3117.544 kb on - strand, within PFLU_RS13810at 3117.612 kb on + strand, within PFLU_RS13810at 3117.612 kb on + strand, within PFLU_RS13810at 3117.613 kb on - strand, within PFLU_RS13810at 3117.730 kb on + strand, within PFLU_RS13810at 3117.730 kb on + strand, within PFLU_RS13810at 3117.730 kb on + strand, within PFLU_RS13810at 3117.730 kb on + strand, within PFLU_RS13810at 3117.730 kb on + strand, within PFLU_RS13810at 3117.730 kb on + strand, within PFLU_RS13810at 3117.730 kb on + strand, within PFLU_RS13810at 3117.731 kb on - strandat 3117.731 kb on - strandat 3117.731 kb on - strandat 3117.732 kb on + strandat 3117.732 kb on + strandat 3117.733 kb on - strandat 3117.747 kb on + strandat 3117.750 kb on + strandat 3117.751 kb on - strandat 3117.760 kb on + strandat 3117.761 kb on - strandat 3117.779 kb on + strandat 3117.779 kb on + strandat 3117.779 kb on + strandat 3117.780 kb on - strandat 3117.780 kb on - strandat 3117.780 kb on - strandat 3117.780 kb on - strandat 3117.780 kb on - strandat 3117.780 kb on - strandat 3117.850 kb on + strand, within PFLU_RS13815at 3117.977 kb on - strand, within PFLU_RS13815at 3118.095 kb on + strandat 3118.095 kb on + strandat 3118.096 kb on - strandat 3118.096 kb on - strandat 3118.096 kb on - strandat 3118.104 kb on + strandat 3118.104 kb on + strandat 3118.104 kb on + strandat 3118.104 kb on + strandat 3118.155 kb on - strandat 3118.162 kb on - strandat 3118.162 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,115,606 + PFLU_RS13800 0.54 -0.9
3,115,623 + PFLU_RS13800 0.55 +0.2
3,115,623 + PFLU_RS13800 0.55 -0.3
3,115,623 + PFLU_RS13800 0.55 -0.5
3,115,623 + PFLU_RS13800 0.55 +1.4
3,115,624 - PFLU_RS13800 0.55 -0.2
3,115,624 - PFLU_RS13800 0.55 -2.5
3,115,624 - PFLU_RS13800 0.55 +0.4
3,115,809 - PFLU_RS13800 0.65 +1.0
3,115,872 + PFLU_RS13800 0.68 +1.0
3,115,872 + PFLU_RS13800 0.68 -0.5
3,115,872 + PFLU_RS13800 0.68 -0.6
3,115,872 + PFLU_RS13800 0.68 -1.3
3,115,872 + PFLU_RS13800 0.68 +0.3
3,115,872 + PFLU_RS13800 0.68 +0.1
3,115,872 + PFLU_RS13800 0.68 +0.3
3,115,872 + PFLU_RS13800 0.68 +0.4
3,115,872 + PFLU_RS13800 0.68 +0.2
3,115,872 + PFLU_RS13800 0.68 -0.4
3,115,873 - PFLU_RS13800 0.68 -0.5
3,115,873 - PFLU_RS13800 0.68 -1.4
3,115,873 - PFLU_RS13800 0.68 +1.5
3,115,873 - PFLU_RS13800 0.68 +1.1
3,115,873 - PFLU_RS13800 0.68 -0.8
3,115,873 - PFLU_RS13800 0.68 -0.3
3,115,873 - PFLU_RS13800 0.68 -0.3
3,115,874 + PFLU_RS13800 0.68 -0.6
3,115,874 + PFLU_RS13800 0.68 -1.0
3,115,874 + PFLU_RS13800 0.68 +1.3
3,115,874 + PFLU_RS13800 0.68 -1.6
3,115,875 - PFLU_RS13800 0.68 +0.7
3,115,875 - PFLU_RS13800 0.68 -1.1
3,116,038 + PFLU_RS13800 0.77 +1.0
3,116,038 + PFLU_RS13800 0.77 +1.2
3,116,038 + PFLU_RS13800 0.77 +0.4
3,116,038 + PFLU_RS13800 0.77 +0.9
3,116,038 + PFLU_RS13800 0.77 +0.5
3,116,038 + PFLU_RS13800 0.77 +0.5
3,116,039 - PFLU_RS13800 0.77 -0.5
3,116,039 - PFLU_RS13800 0.77 +1.0
3,116,039 - PFLU_RS13800 0.77 +0.0
3,116,039 - PFLU_RS13800 0.77 +0.7
3,116,267 + PFLU_RS13800 0.89 +0.2
3,116,267 + PFLU_RS13800 0.89 -0.2
3,116,267 + PFLU_RS13800 0.89 -1.0
3,116,267 + PFLU_RS13800 0.89 +0.6
3,116,267 + PFLU_RS13800 0.89 -1.5
3,116,267 + PFLU_RS13800 0.89 +0.2
3,116,267 + PFLU_RS13800 0.89 -0.1
3,116,267 + PFLU_RS13800 0.89 -1.9
3,116,267 + PFLU_RS13800 0.89 -0.6
3,116,268 - PFLU_RS13800 0.89 -0.9
3,116,268 - PFLU_RS13800 0.89 +0.4
3,116,478 + +0.6
3,116,478 + -2.1
3,116,478 + +0.7
3,116,495 + +1.1
3,116,495 + -0.1
3,116,495 + -1.0
3,116,495 + +0.7
3,116,495 + +0.7
3,116,496 - -0.1
3,116,496 - +0.3
3,116,496 - -0.5
3,116,496 - +1.2
3,116,496 - +0.9
3,116,496 - +0.6
3,116,496 - -0.1
3,116,498 - +0.2
3,116,498 - +0.7
3,116,509 - -1.0
3,116,557 + -0.6
3,116,559 + -0.3
3,116,583 + +0.8
3,116,584 - +0.2
3,116,651 - PFLU_RS13805 0.18 -1.3
3,116,712 + PFLU_RS13805 0.27 -0.1
3,116,713 - PFLU_RS13805 0.27 -0.1
3,116,713 - PFLU_RS13805 0.27 -0.6
3,116,720 + PFLU_RS13805 0.28 +0.5
3,116,851 - PFLU_RS13805 0.47 -0.2
3,116,866 - PFLU_RS13805 0.50 -0.6
3,116,866 - PFLU_RS13805 0.50 +0.6
3,116,904 + PFLU_RS13805 0.55 -0.3
3,116,909 + PFLU_RS13805 0.56 +0.1
3,116,909 + PFLU_RS13805 0.56 -0.8
3,116,910 - PFLU_RS13805 0.56 +0.4
3,116,910 - PFLU_RS13805 0.56 -0.2
3,116,910 - PFLU_RS13805 0.56 +0.5
3,116,910 - PFLU_RS13805 0.56 -0.0
3,116,910 - PFLU_RS13805 0.56 +0.7
3,116,910 - PFLU_RS13805 0.56 +0.7
3,116,910 - PFLU_RS13805 0.56 -0.9
3,116,910 - PFLU_RS13805 0.56 +0.5
3,116,951 - PFLU_RS13805 0.62 -1.6
3,116,954 + PFLU_RS13805 0.62 +0.1
3,116,954 + PFLU_RS13805 0.62 -1.4
3,116,955 - PFLU_RS13805 0.63 +0.7
3,116,955 - PFLU_RS13805 0.63 -0.7
3,116,955 - PFLU_RS13805 0.63 +0.4
3,116,972 + PFLU_RS13805 0.65 -0.6
3,116,972 + PFLU_RS13805 0.65 -0.6
3,116,973 - PFLU_RS13805 0.65 -0.2
3,116,975 + PFLU_RS13805 0.65 +0.1
3,116,975 + PFLU_RS13805 0.65 +0.9
3,116,975 + PFLU_RS13805 0.65 +0.7
3,116,975 + PFLU_RS13805 0.65 +0.7
3,117,012 + PFLU_RS13805 0.71 +0.4
3,117,058 - PFLU_RS13805 0.78 -0.4
3,117,141 + PFLU_RS13805 0.90 -0.8
3,117,142 - -0.4
3,117,153 + +0.3
3,117,153 + +0.7
3,117,153 + +0.5
3,117,153 + +0.0
3,117,153 + +0.3
3,117,153 + +0.5
3,117,153 + -0.3
3,117,153 + -0.1
3,117,153 + +0.9
3,117,153 + +0.0
3,117,153 + -0.6
3,117,153 + +0.4
3,117,153 + +0.4
3,117,153 + +0.4
3,117,153 + -0.9
3,117,154 - +0.3
3,117,154 - -1.5
3,117,154 - +0.5
3,117,154 - +0.4
3,117,154 - +1.5
3,117,154 - -0.2
3,117,154 - -0.4
3,117,208 + -0.2
3,117,209 - +0.4
3,117,209 - -0.7
3,117,209 - -0.2
3,117,222 + -0.1
3,117,222 + +0.4
3,117,222 + +2.0
3,117,223 - +0.2
3,117,223 - -0.4
3,117,288 + +0.0
3,117,288 + +0.9
3,117,316 + +0.2
3,117,316 + +0.3
3,117,338 - +0.1
3,117,398 - +1.7
3,117,398 - +0.2
3,117,401 - -0.0
3,117,401 - -0.3
3,117,537 + PFLU_RS13810 0.28 -0.3
3,117,537 + PFLU_RS13810 0.28 +0.8
3,117,538 - PFLU_RS13810 0.29 -0.5
3,117,543 + PFLU_RS13810 0.30 +0.5
3,117,544 - PFLU_RS13810 0.30 -0.9
3,117,612 + PFLU_RS13810 0.52 +0.2
3,117,612 + PFLU_RS13810 0.52 +0.7
3,117,613 - PFLU_RS13810 0.52 +0.5
3,117,730 + PFLU_RS13810 0.90 +0.5
3,117,730 + PFLU_RS13810 0.90 +0.3
3,117,730 + PFLU_RS13810 0.90 -0.1
3,117,730 + PFLU_RS13810 0.90 +0.8
3,117,730 + PFLU_RS13810 0.90 -0.6
3,117,730 + PFLU_RS13810 0.90 +0.5
3,117,730 + PFLU_RS13810 0.90 -2.3
3,117,731 - +0.9
3,117,731 - +0.6
3,117,731 - +0.1
3,117,732 + +0.3
3,117,732 + -0.8
3,117,733 - +0.1
3,117,747 + -1.5
3,117,750 + +0.2
3,117,751 - -0.2
3,117,760 + -0.1
3,117,761 - +0.0
3,117,779 + -0.8
3,117,779 + -0.1
3,117,779 + -0.2
3,117,780 - -1.2
3,117,780 - -0.2
3,117,780 - +1.2
3,117,780 - +0.1
3,117,780 - -0.6
3,117,780 - +1.6
3,117,850 + PFLU_RS13815 0.30 -0.7
3,117,977 - PFLU_RS13815 0.67 -0.4
3,118,095 + -0.1
3,118,095 + -1.1
3,118,096 - -0.2
3,118,096 - +1.4
3,118,096 - +2.1
3,118,104 + +0.9
3,118,104 + +1.4
3,118,104 + +1.1
3,118,104 + +1.5
3,118,155 - -0.1
3,118,162 - -0.2
3,118,162 - +0.3

Or see this region's nucleotide sequence