Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS08640

Experiment: D,L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Lactate (C)
1,921,907	-		PFLU_RS08630	0.78	-0.8
1,921,907	-		PFLU_RS08630	0.78	-0.4
1,921,907	-		PFLU_RS08630	0.78	+1.1
1,921,958	+		PFLU_RS08630	0.82	-0.4
1,921,959	-		PFLU_RS08630	0.83	+0.0
1,921,959	-		PFLU_RS08630	0.83	+0.3
1,922,002	+		PFLU_RS08630	0.86	+0.0
1,922,002	+		PFLU_RS08630	0.86	-1.7
1,922,002	+		PFLU_RS08630	0.86	+1.8
1,922,041	+		PFLU_RS08630	0.89	-1.9
1,922,041	+		PFLU_RS08630	0.89	+0.1
1,922,041	+		PFLU_RS08630	0.89	-0.6
1,922,042	-		PFLU_RS08630	0.89	+0.0
1,922,064	-				+0.6
1,922,220	-				-0.1
1,922,220	-				-0.3
1,922,220	-				+0.5
1,922,220	-				+0.3
1,922,220	-				+0.2
1,922,220	-				+0.3
1,922,220	-				-0.5
1,922,356	+		PFLU_RS31475	0.69	-0.4
1,922,356	+		PFLU_RS31475	0.69	+0.1
1,922,418	+				-0.4
1,922,418	+				+1.0
1,922,418	+				+1.3
1,922,419	-				-1.5
1,922,419	-				-1.2
1,922,482	+		PFLU_RS08635	0.18	-0.9
1,922,483	-		PFLU_RS08635	0.18	+0.6
1,922,483	-		PFLU_RS08635	0.18	-0.2
1,922,483	-		PFLU_RS08635	0.18	+0.1
1,922,545	+		PFLU_RS08635	0.37	-1.0
1,922,614	+		PFLU_RS08635	0.58	-0.3
1,922,614	+		PFLU_RS08635	0.58	+0.7
1,922,614	+		PFLU_RS08635	0.58	-1.2
1,922,614	+		PFLU_RS08635	0.58	-0.3
1,922,614	+		PFLU_RS08635	0.58	-0.3
1,922,614	+		PFLU_RS08635	0.58	-0.6
1,922,615	-		PFLU_RS08635	0.58	-0.2
1,922,615	-		PFLU_RS08635	0.58	+0.2
1,922,615	-		PFLU_RS08635	0.58	-2.0
1,922,615	-		PFLU_RS08635	0.58	-0.3
1,922,615	-		PFLU_RS08635	0.58	-0.5
1,922,710	+		PFLU_RS08635	0.87	+0.7
1,922,710	+		PFLU_RS08635	0.87	+0.4
1,922,710	+		PFLU_RS08635	0.87	-0.6
1,922,711	-		PFLU_RS08635	0.87	+0.1
1,922,711	-		PFLU_RS08635	0.87	+1.0
1,922,711	-		PFLU_RS08635	0.87	-0.6
1,923,409	+		PFLU_RS08640	0.42	+0.4
1,923,409	+		PFLU_RS08640	0.42	-1.1
1,923,410	-		PFLU_RS08640	0.42	+0.4
1,923,410	-		PFLU_RS08640	0.42	-2.9
1,923,437	+		PFLU_RS08640	0.44	+0.0
1,923,437	+		PFLU_RS08640	0.44	+0.7
1,923,437	+		PFLU_RS08640	0.44	-0.1
1,923,437	+		PFLU_RS08640	0.44	-0.9
1,923,438	-		PFLU_RS08640	0.44	+0.5
1,923,438	-		PFLU_RS08640	0.44	+1.5
1,923,438	-		PFLU_RS08640	0.44	+0.5
1,923,557	+		PFLU_RS08640	0.51	+0.4
1,923,558	-		PFLU_RS08640	0.51	+0.6
1,923,888	+		PFLU_RS08640	0.72	-0.3
1,923,888	+		PFLU_RS08640	0.72	+0.1
1,923,889	-		PFLU_RS08640	0.72	-0.8
1,923,973	+		PFLU_RS08640	0.78	-0.5
1,924,045	+		PFLU_RS08640	0.82	+0.1
1,924,045	+		PFLU_RS08640	0.82	-0.7
1,924,303	+				+0.1
1,924,304	-				-0.9
1,924,304	-				+0.1
1,924,304	-				+0.4
1,924,361	+				+0.2
1,924,361	+				-0.4
1,924,361	+				+0.4
1,924,362	-				-0.1
1,924,362	-				+1.0
1,924,380	+				+0.5
1,924,380	+				-0.1
1,924,380	+				+0.2
1,924,380	+				+0.1
1,924,380	+				+1.6
1,924,380	+				+0.1
1,924,380	+				+1.6
1,924,380	+				+0.7
1,924,380	+				+0.2
1,924,380	+				+0.9
1,924,380	+				+0.7
1,924,380	+				+0.7
1,924,380	+				-2.4
1,924,380	+				-0.9
1,924,380	+				-0.3
1,924,380	+				+1.2
1,924,380	+				+0.2
1,924,380	+				-0.7
1,924,380	+				-0.4
1,924,380	+				+0.0
1,924,380	+				-0.9
1,924,380	+				-0.1
1,924,380	+				-1.1
1,924,380	+				+0.0
1,924,380	+				+1.0
1,924,380	+				+0.0
1,924,380	+				+0.8
1,924,380	+				-0.4
1,924,380	+				+0.2
1,924,380	+				+0.1
1,924,380	+				+0.8
1,924,380	+				-1.0
1,924,380	+				-1.9
1,924,380	+				+0.1
1,924,380	+				-0.1
1,924,380	+				-0.1
1,924,380	+				+0.5
1,924,380	+				-0.4
1,924,380	+				+0.6
1,924,380	+				-0.0
1,924,380	+				-1.6
1,924,380	+				-0.7
1,924,380	+				+0.1
1,924,380	+				+0.3
1,924,380	+				+0.1
1,924,380	+				-0.5
1,924,380	+				+0.9
1,924,381	-				+0.1
1,924,381	-				-0.0
1,924,381	-				-0.3
1,924,381	-				-0.3
1,924,381	-				-0.6
1,924,381	-				+0.1
1,924,381	-				+0.9
1,924,381	-				+0.4
1,924,381	-				-1.0
1,924,381	-				-0.3
1,924,381	-				+0.4
1,924,381	-				+0.5
1,924,381	-				+0.6
1,924,381	-				-0.8
1,924,381	-				-0.1
1,924,381	-				-0.6
1,924,381	-				+1.2
1,924,381	-				-0.0
1,924,381	-				-0.0
1,924,381	-				-1.5
1,924,381	-				-0.2
1,924,381	-				+0.3
1,924,381	-				-0.3
1,924,381	-				+1.5
1,924,381	-				-1.3
1,924,381	-				+0.7
1,924,381	-				-1.0
1,924,381	-				-0.2
1,924,381	-				-0.1
1,924,381	-				+0.3
1,924,381	-				-0.5
1,924,381	-				+0.1
1,924,381	-				+0.5
1,924,381	-				+1.1
1,924,381	-				+0.6
1,924,381	-				-1.0
1,924,381	-				+0.4
1,924,381	-				-0.3
1,924,381	-				+0.4
1,924,381	-				+0.3
1,924,381	-				+0.0
1,924,381	-				+0.3
1,924,381	-				+0.1
1,924,381	-				-0.8
1,924,381	-				-1.2
1,924,381	-				+0.2
1,924,381	-				-0.5
1,924,381	-				+0.6
1,924,381	-				+0.7
1,924,382	+				+0.2
1,924,382	+				+0.0
1,924,382	+				+0.8
1,924,383	-				+1.6
1,924,383	-				+1.1
1,924,383	-				+0.0
1,924,383	-				+0.2
1,924,425	+				-0.5
1,924,425	+				-0.2
1,924,425	+				+0.2
1,924,425	+				-1.2
1,924,425	+				+1.1
1,924,426	-				+1.1
1,924,426	-				-0.5
1,924,426	-				+0.4
1,924,426	-				+0.2
1,924,426	-				+0.7
1,924,464	+				+1.3
1,924,464	+				-0.2
1,924,511	+				+1.0
1,924,512	-				+1.2
1,924,969	+		PFLU_RS08645	0.69	-0.5
1,924,970	-		PFLU_RS08645	0.69	-0.3