Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS08000

Experiment: D,L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Lactate (C)
1,782,450	+		PFLU_RS07995	0.42	+0.4
1,782,461	+		PFLU_RS07995	0.43	-0.1
1,782,462	-		PFLU_RS07995	0.43	-0.0
1,782,518	+		PFLU_RS07995	0.48	-0.5
1,782,518	+		PFLU_RS07995	0.48	+0.1
1,782,518	+		PFLU_RS07995	0.48	-0.0
1,782,518	+		PFLU_RS07995	0.48	+0.0
1,782,518	+		PFLU_RS07995	0.48	-0.1
1,782,519	-		PFLU_RS07995	0.48	+0.3
1,782,537	-		PFLU_RS07995	0.49	+0.1
1,782,762	+		PFLU_RS07995	0.68	-0.1
1,782,762	+		PFLU_RS07995	0.68	-0.7
1,782,762	+		PFLU_RS07995	0.68	-0.8
1,783,121	+				+0.3
1,783,122	-				+0.2
1,783,122	-				+0.0
1,783,177	+				+0.5
1,783,177	+				+0.8
1,783,177	+				+0.2
1,783,177	+				+1.2
1,783,178	-				-2.2
1,783,178	-				-0.1
1,783,178	-				-0.0
1,783,178	-				+0.2
1,783,178	-				-0.0
1,783,178	-				-0.0
1,783,178	-				-0.2
1,783,189	+				+0.4
1,783,189	+				+0.2
1,783,190	-				-0.4
1,783,308	+				+0.2
1,783,308	+				-0.0
1,783,308	+				-0.3
1,783,309	-				-0.1
1,783,309	-				+1.5
1,783,309	-				-0.2
1,783,693	+		PFLU_RS08000	0.48	-0.6
1,783,693	+		PFLU_RS08000	0.48	+0.1
1,783,693	+		PFLU_RS08000	0.48	+0.3
1,783,693	+		PFLU_RS08000	0.48	+0.8
1,783,693	+		PFLU_RS08000	0.48	-0.0
1,783,740	+		PFLU_RS08000	0.53	-1.0
1,783,769	+		PFLU_RS08000	0.56	-0.3
1,783,769	+		PFLU_RS08000	0.56	+1.1
1,783,769	+		PFLU_RS08000	0.56	+0.8
1,783,769	+		PFLU_RS08000	0.56	+0.9
1,783,769	+		PFLU_RS08000	0.56	-0.1
1,783,769	+		PFLU_RS08000	0.56	-0.7
1,783,769	+		PFLU_RS08000	0.56	-0.7
1,783,770	-		PFLU_RS08000	0.57	-0.9
1,783,770	-		PFLU_RS08000	0.57	+1.1
1,783,779	+		PFLU_RS08000	0.57	+0.4
1,783,779	+		PFLU_RS08000	0.57	+1.1
1,783,779	+		PFLU_RS08000	0.57	-0.7
1,783,779	+		PFLU_RS08000	0.57	+2.1
1,783,779	+		PFLU_RS08000	0.57	-0.9
1,783,780	-		PFLU_RS08000	0.58	-0.3
1,783,780	-		PFLU_RS08000	0.58	+0.7
1,783,780	-		PFLU_RS08000	0.58	+0.1
1,783,780	-		PFLU_RS08000	0.58	+1.5
1,783,788	+		PFLU_RS08000	0.58	-0.3
1,783,789	-		PFLU_RS08000	0.59	-0.7
1,784,000	+		PFLU_RS08000	0.82	+0.0
1,784,001	-		PFLU_RS08000	0.82	-0.5
1,784,001	-		PFLU_RS08000	0.82	-3.6
1,784,064	+		PFLU_RS08000	0.89	+0.2
1,784,064	+		PFLU_RS08000	0.89	+0.3
1,784,064	+		PFLU_RS08000	0.89	+1.1
1,784,064	+		PFLU_RS08000	0.89	-0.2
1,784,064	+		PFLU_RS08000	0.89	+0.3
1,784,064	+		PFLU_RS08000	0.89	+0.9
1,784,064	+		PFLU_RS08000	0.89	+0.8
1,784,064	+		PFLU_RS08000	0.89	+0.1
1,784,064	+		PFLU_RS08000	0.89	-0.6
1,784,064	+		PFLU_RS08000	0.89	-0.5
1,784,064	+		PFLU_RS08000	0.89	+0.6
1,784,064	+		PFLU_RS08000	0.89	-0.1
1,784,065	-		PFLU_RS08000	0.89	-0.5
1,784,065	-		PFLU_RS08000	0.89	-0.2
1,784,065	-		PFLU_RS08000	0.89	+1.1
1,784,065	-		PFLU_RS08000	0.89	-0.2
1,784,065	-		PFLU_RS08000	0.89	+0.0
1,784,065	-		PFLU_RS08000	0.89	+0.0
1,784,065	-		PFLU_RS08000	0.89	+0.1
1,784,065	-		PFLU_RS08000	0.89	+0.2
1,784,065	-		PFLU_RS08000	0.89	-0.7
1,784,065	-		PFLU_RS08000	0.89	+0.3
1,784,071	+		PFLU_RS08000	0.89	+0.6
1,784,154	+				-0.4
1,784,154	+				-0.4
1,784,155	-				+0.2
1,784,193	-				+0.8
1,784,225	+				-0.2
1,784,226	-				+1.0
1,784,261	-				+0.9
1,784,317	+				-0.4
1,784,318	-				+0.4
1,784,318	-				-0.0
1,784,362	+				-0.6
1,784,362	+				+0.1
1,784,362	+				+0.2
1,784,362	+				+0.3
1,784,362	+				+0.3
1,784,362	+				-0.4
1,784,362	+				-1.0
1,784,362	+				+0.2
1,784,362	+				+0.6
1,784,362	+				-1.1
1,784,362	+				+1.1
1,784,362	+				+0.7
1,784,362	+				+1.4
1,784,362	+				-0.5
1,784,362	+				-0.0
1,784,362	+				-0.4
1,784,362	+				-0.1
1,784,362	+				-0.2
1,784,362	+				-0.5
1,784,362	+				-1.6
1,784,362	+				-0.1
1,784,362	+				-0.1
1,784,362	+				+0.4
1,784,362	+				-0.6
1,784,362	+				-0.5
1,784,362	+				+1.0
1,784,362	+				+1.0
1,784,362	+				-1.4
1,784,362	+				-0.8
1,784,363	-				+0.9
1,784,363	-				+0.6
1,784,363	-				-1.0
1,784,363	-				-0.0
1,784,363	-				+0.5
1,784,363	-				+0.1
1,784,363	-				+0.1
1,784,363	-				+0.2
1,784,363	-				-0.0
1,784,363	-				+0.4
1,784,363	-				-0.1
1,784,363	-				+0.2
1,784,363	-				-2.0
1,784,363	-				+0.3
1,784,363	-				-0.9
1,784,363	-				-1.2
1,784,363	-				+0.1
1,784,363	-				+1.4
1,784,363	-				+0.8
1,784,363	-				+1.0
1,784,363	-				-0.4
1,784,363	-				+0.7
1,784,363	-				-0.1
1,784,363	-				+0.5
1,784,363	-				-0.9
1,784,363	-				-0.2
1,784,363	-				-0.8
1,784,363	-				-1.0
1,784,363	-				-1.0
1,784,363	-				+1.1
1,784,363	-				+0.7
1,784,363	-				-0.4
1,784,363	-				-0.5
1,784,363	-				-0.2
1,784,363	-				+0.4
1,784,363	-				-0.9
1,784,363	-				-0.6
1,784,363	-				+0.3
1,784,363	-				+0.5
1,784,363	-				+0.9
1,784,363	-				+0.8
1,784,363	-				-1.0
1,784,363	-				+1.0
1,784,363	-				+0.6
1,784,363	-				+0.8
1,784,363	-				-0.8
1,784,434	-		PFLU_RS08005	0.12	+0.5
1,784,595	+		PFLU_RS08005	0.26	-0.1
1,784,595	+		PFLU_RS08005	0.26	-0.7
1,784,595	+		PFLU_RS08005	0.26	+0.7
1,784,595	+		PFLU_RS08005	0.26	-0.5
1,784,596	-		PFLU_RS08005	0.26	-0.2
1,784,596	-		PFLU_RS08005	0.26	-0.1
1,784,596	-		PFLU_RS08005	0.26	-0.4
1,784,596	-		PFLU_RS08005	0.26	-0.8
1,784,748	-		PFLU_RS08005	0.39	-0.7
1,784,783	+		PFLU_RS08005	0.42	-0.9
1,784,783	+		PFLU_RS08005	0.42	-0.3
1,784,783	+		PFLU_RS08005	0.42	+0.7
1,784,783	+		PFLU_RS08005	0.42	+0.3
1,784,783	+		PFLU_RS08005	0.42	+0.4
1,784,783	+		PFLU_RS08005	0.42	+1.3
1,784,783	+		PFLU_RS08005	0.42	+1.7
1,784,783	+		PFLU_RS08005	0.42	-0.4
1,784,783	+		PFLU_RS08005	0.42	-1.7
1,784,784	-		PFLU_RS08005	0.42	-1.0
1,784,784	-		PFLU_RS08005	0.42	-0.5
1,784,784	-		PFLU_RS08005	0.42	+1.1
1,784,784	-		PFLU_RS08005	0.42	-0.4
1,784,784	-		PFLU_RS08005	0.42	-0.9
1,784,807	+		PFLU_RS08005	0.44	-1.2
1,784,832	+		PFLU_RS08005	0.46	-0.2
1,784,998	+		PFLU_RS08005	0.60	+0.7
1,785,025	+		PFLU_RS08005	0.62	-0.6
1,785,025	+		PFLU_RS08005	0.62	+1.4
1,785,025	+		PFLU_RS08005	0.62	+0.0
1,785,025	+		PFLU_RS08005	0.62	+0.7
1,785,025	+		PFLU_RS08005	0.62	+0.5
1,785,025	+		PFLU_RS08005	0.62	-0.7
1,785,025	+		PFLU_RS08005	0.62	-1.3
1,785,025	+		PFLU_RS08005	0.62	-0.6
1,785,025	+		PFLU_RS08005	0.62	+0.7
1,785,025	+		PFLU_RS08005	0.62	-0.2
1,785,025	+		PFLU_RS08005	0.62	-1.0
1,785,026	-		PFLU_RS08005	0.62	-1.2
1,785,026	-		PFLU_RS08005	0.62	-0.1
1,785,026	-		PFLU_RS08005	0.62	+0.7
1,785,026	-		PFLU_RS08005	0.62	+0.4
1,785,026	-		PFLU_RS08005	0.62	-0.7
1,785,026	-		PFLU_RS08005	0.62	+1.0
1,785,026	-		PFLU_RS08005	0.62	+0.5
1,785,026	-		PFLU_RS08005	0.62	-1.0
1,785,026	-		PFLU_RS08005	0.62	+0.5
1,785,026	-		PFLU_RS08005	0.62	-0.1
1,785,026	-		PFLU_RS08005	0.62	+0.8
1,785,026	-		PFLU_RS08005	0.62	+0.1
1,785,026	-		PFLU_RS08005	0.62	-1.2
1,785,061	+		PFLU_RS08005	0.65	-0.0
1,785,061	+		PFLU_RS08005	0.65	-0.3
1,785,127	+		PFLU_RS08005	0.71	-0.5
1,785,151	+		PFLU_RS08005	0.73	+0.5
1,785,151	+		PFLU_RS08005	0.73	+0.3
1,785,151	+		PFLU_RS08005	0.73	+0.3
1,785,151	+		PFLU_RS08005	0.73	-0.5
1,785,151	+		PFLU_RS08005	0.73	-2.0
1,785,151	+		PFLU_RS08005	0.73	+0.4
1,785,151	+		PFLU_RS08005	0.73	-0.6
1,785,151	+		PFLU_RS08005	0.73	-0.5
1,785,152	-		PFLU_RS08005	0.73	-0.2
1,785,152	-		PFLU_RS08005	0.73	-0.2
1,785,152	-		PFLU_RS08005	0.73	-0.1
1,785,152	-		PFLU_RS08005	0.73	-0.0
1,785,152	-		PFLU_RS08005	0.73	-0.5
1,785,152	-		PFLU_RS08005	0.73	-0.3
1,785,152	-		PFLU_RS08005	0.73	+0.8