Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS06115 and PFLU_RS06120 are separated by 55 nucleotides PFLU_RS06120 and PFLU_RS06125 are separated by 273 nucleotides PFLU_RS06125 and PFLU_RS06130 are separated by 184 nucleotides
PFLU_RS06115: PFLU_RS06115 - OmpA family protein, at 1,368,943 to 1,369,728
_RS06115
PFLU_RS06120: PFLU_RS06120 - DUF4398 domain-containing protein, at 1,369,784 to 1,370,209
_RS06120
PFLU_RS06125: PFLU_RS06125 - hypothetical protein, at 1,370,483 to 1,370,827
_RS06125
PFLU_RS06130: PFLU_RS06130 - phosphoenolpyruvate carboxylase, at 1,371,012 to 1,373,639
_RS06130
Position (kb) 1370
1371 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1369.491 kb on - strand, within PFLU_RS06115 at 1369.491 kb on - strand, within PFLU_RS06115 at 1369.491 kb on - strand, within PFLU_RS06115 at 1369.491 kb on - strand, within PFLU_RS06115 at 1369.491 kb on - strand, within PFLU_RS06115 at 1369.525 kb on - strand, within PFLU_RS06115 at 1369.728 kb on + strand at 1369.728 kb on + strand at 1369.729 kb on - strand at 1369.785 kb on + strand at 1369.785 kb on + strand at 1369.785 kb on + strand at 1369.786 kb on - strand at 1369.823 kb on - strand at 1369.823 kb on - strand at 1369.888 kb on + strand, within PFLU_RS06120 at 1369.888 kb on + strand, within PFLU_RS06120 at 1369.888 kb on + strand, within PFLU_RS06120 at 1369.888 kb on + strand, within PFLU_RS06120 at 1369.888 kb on + strand, within PFLU_RS06120 at 1369.888 kb on + strand, within PFLU_RS06120 at 1369.889 kb on - strand, within PFLU_RS06120 at 1369.947 kb on + strand, within PFLU_RS06120 at 1369.947 kb on + strand, within PFLU_RS06120 at 1369.948 kb on - strand, within PFLU_RS06120 at 1369.948 kb on - strand, within PFLU_RS06120 at 1369.948 kb on - strand, within PFLU_RS06120 at 1369.948 kb on - strand, within PFLU_RS06120 at 1369.948 kb on - strand, within PFLU_RS06120 at 1370.009 kb on + strand, within PFLU_RS06120 at 1370.009 kb on + strand, within PFLU_RS06120 at 1370.009 kb on + strand, within PFLU_RS06120 at 1370.010 kb on - strand, within PFLU_RS06120 at 1370.010 kb on - strand, within PFLU_RS06120 at 1370.010 kb on - strand, within PFLU_RS06120 at 1370.010 kb on - strand, within PFLU_RS06120 at 1370.010 kb on - strand, within PFLU_RS06120 at 1370.019 kb on + strand, within PFLU_RS06120 at 1370.019 kb on + strand, within PFLU_RS06120 at 1370.019 kb on + strand, within PFLU_RS06120 at 1370.073 kb on + strand, within PFLU_RS06120 at 1370.074 kb on - strand, within PFLU_RS06120 at 1370.215 kb on - strand at 1370.232 kb on + strand at 1370.232 kb on + strand at 1370.233 kb on - strand at 1370.233 kb on - strand at 1370.316 kb on + strand at 1370.317 kb on - strand at 1370.460 kb on + strand at 1370.460 kb on + strand at 1370.460 kb on + strand at 1370.481 kb on + strand at 1370.481 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.515 kb on + strand at 1370.516 kb on - strand at 1370.516 kb on - strand at 1370.516 kb on - strand at 1370.516 kb on - strand at 1370.516 kb on - strand at 1370.516 kb on - strand at 1370.516 kb on - strand at 1370.516 kb on - strand at 1370.516 kb on - strand at 1370.516 kb on - strand at 1370.516 kb on - strand at 1370.516 kb on - strand at 1370.516 kb on - strand at 1370.516 kb on - strand at 1370.516 kb on - strand at 1370.516 kb on - strand at 1370.516 kb on - strand at 1370.516 kb on - strand at 1370.516 kb on - strand at 1370.516 kb on - strand at 1370.516 kb on - strand at 1370.516 kb on - strand at 1370.516 kb on - strand at 1370.526 kb on + strand, within PFLU_RS06125 at 1370.557 kb on + strand, within PFLU_RS06125 at 1370.558 kb on - strand, within PFLU_RS06125 at 1370.558 kb on - strand, within PFLU_RS06125 at 1370.574 kb on + strand, within PFLU_RS06125 at 1370.574 kb on + strand, within PFLU_RS06125 at 1370.574 kb on + strand, within PFLU_RS06125 at 1370.574 kb on + strand, within PFLU_RS06125 at 1370.574 kb on + strand, within PFLU_RS06125 at 1370.574 kb on + strand, within PFLU_RS06125 at 1370.574 kb on + strand, within PFLU_RS06125 at 1370.574 kb on + strand, within PFLU_RS06125 at 1370.575 kb on - strand, within PFLU_RS06125 at 1370.575 kb on - strand, within PFLU_RS06125 at 1370.625 kb on + strand, within PFLU_RS06125 at 1370.625 kb on + strand, within PFLU_RS06125 at 1370.626 kb on - strand, within PFLU_RS06125 at 1370.626 kb on - strand, within PFLU_RS06125 at 1370.626 kb on - strand, within PFLU_RS06125 at 1370.626 kb on - strand, within PFLU_RS06125 at 1370.704 kb on - strand, within PFLU_RS06125 at 1370.760 kb on + strand, within PFLU_RS06125 at 1370.839 kb on + strand at 1370.914 kb on + strand at 1370.914 kb on + strand at 1370.914 kb on + strand at 1370.914 kb on + strand at 1370.915 kb on - strand at 1370.915 kb on - strand at 1370.915 kb on - strand at 1370.915 kb on - strand at 1370.915 kb on - strand at 1370.915 kb on - strand at 1370.934 kb on + strand at 1370.934 kb on + strand at 1370.934 kb on + strand at 1370.947 kb on + strand at 1370.948 kb on - strand at 1371.090 kb on + strand at 1371.091 kb on - strand at 1371.264 kb on + strand at 1371.264 kb on + strand at 1371.319 kb on + strand, within PFLU_RS06130 at 1371.320 kb on - strand, within PFLU_RS06130 at 1371.459 kb on + strand, within PFLU_RS06130 at 1371.459 kb on + strand, within PFLU_RS06130 at 1371.459 kb on + strand, within PFLU_RS06130 at 1371.459 kb on + strand, within PFLU_RS06130 at 1371.459 kb on + strand, within PFLU_RS06130 at 1371.459 kb on + strand, within PFLU_RS06130 at 1371.460 kb on - strand, within PFLU_RS06130 at 1371.460 kb on - strand, within PFLU_RS06130 at 1371.460 kb on - strand, within PFLU_RS06130 at 1371.460 kb on - strand, within PFLU_RS06130 at 1371.460 kb on - strand, within PFLU_RS06130 at 1371.460 kb on - strand, within PFLU_RS06130 at 1371.460 kb on - strand, within PFLU_RS06130 at 1371.666 kb on + strand, within PFLU_RS06130 at 1371.666 kb on + strand, within PFLU_RS06130 at 1371.667 kb on - strand, within PFLU_RS06130 at 1371.667 kb on - strand, within PFLU_RS06130 at 1371.667 kb on - strand, within PFLU_RS06130
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,369,491 - PFLU_RS06115 0.70 -0.3 1,369,491 - PFLU_RS06115 0.70 +1.5 1,369,491 - PFLU_RS06115 0.70 +0.9 1,369,491 - PFLU_RS06115 0.70 -0.1 1,369,491 - PFLU_RS06115 0.70 +0.5 1,369,525 - PFLU_RS06115 0.74 +1.0 1,369,728 + -0.1 1,369,728 + -0.0 1,369,729 - +0.5 1,369,785 + -1.8 1,369,785 + +0.8 1,369,785 + +0.9 1,369,786 - -0.8 1,369,823 - +0.0 1,369,823 - -0.2 1,369,888 + PFLU_RS06120 0.24 -0.2 1,369,888 + PFLU_RS06120 0.24 +0.6 1,369,888 + PFLU_RS06120 0.24 +0.3 1,369,888 + PFLU_RS06120 0.24 -1.5 1,369,888 + PFLU_RS06120 0.24 +0.7 1,369,888 + PFLU_RS06120 0.24 +0.9 1,369,889 - PFLU_RS06120 0.25 +0.1 1,369,947 + PFLU_RS06120 0.38 -0.2 1,369,947 + PFLU_RS06120 0.38 -0.8 1,369,948 - PFLU_RS06120 0.38 -0.1 1,369,948 - PFLU_RS06120 0.38 -0.2 1,369,948 - PFLU_RS06120 0.38 +0.3 1,369,948 - PFLU_RS06120 0.38 +2.6 1,369,948 - PFLU_RS06120 0.38 -0.2 1,370,009 + PFLU_RS06120 0.53 -0.0 1,370,009 + PFLU_RS06120 0.53 +2.1 1,370,009 + PFLU_RS06120 0.53 +0.2 1,370,010 - PFLU_RS06120 0.53 -0.3 1,370,010 - PFLU_RS06120 0.53 -1.2 1,370,010 - PFLU_RS06120 0.53 +0.3 1,370,010 - PFLU_RS06120 0.53 -0.5 1,370,010 - PFLU_RS06120 0.53 -0.4 1,370,019 + PFLU_RS06120 0.55 -1.2 1,370,019 + PFLU_RS06120 0.55 +0.1 1,370,019 + PFLU_RS06120 0.55 +0.0 1,370,073 + PFLU_RS06120 0.68 -0.2 1,370,074 - PFLU_RS06120 0.68 -2.2 1,370,215 - -0.6 1,370,232 + +0.0 1,370,232 + -0.3 1,370,233 - -1.3 1,370,233 - +1.0 1,370,316 + +0.0 1,370,317 - -1.0 1,370,460 + -1.1 1,370,460 + -0.1 1,370,460 + +1.3 1,370,481 + -0.4 1,370,481 + -0.3 1,370,515 + -0.5 1,370,515 + -2.7 1,370,515 + -0.3 1,370,515 + -0.4 1,370,515 + -0.4 1,370,515 + -0.5 1,370,515 + -0.0 1,370,515 + -0.1 1,370,515 + +0.8 1,370,515 + +1.2 1,370,515 + +0.3 1,370,515 + -0.1 1,370,515 + +0.3 1,370,515 + -0.2 1,370,515 + -0.3 1,370,515 + -2.9 1,370,515 + +1.7 1,370,515 + +0.5 1,370,515 + -0.4 1,370,515 + +0.7 1,370,515 + -2.1 1,370,515 + +0.0 1,370,515 + -0.8 1,370,515 + +0.3 1,370,515 + +1.5 1,370,515 + -0.3 1,370,515 + +0.0 1,370,515 + -0.8 1,370,515 + -0.6 1,370,515 + +1.0 1,370,515 + +0.2 1,370,515 + -0.6 1,370,516 - +0.3 1,370,516 - +0.6 1,370,516 - +0.4 1,370,516 - -0.6 1,370,516 - -0.0 1,370,516 - -0.7 1,370,516 - +0.5 1,370,516 - -2.1 1,370,516 - +1.0 1,370,516 - -0.7 1,370,516 - -0.3 1,370,516 - +0.7 1,370,516 - -0.3 1,370,516 - +0.4 1,370,516 - -2.4 1,370,516 - +0.5 1,370,516 - -0.2 1,370,516 - +0.1 1,370,516 - +1.1 1,370,516 - +0.6 1,370,516 - +0.3 1,370,516 - +0.7 1,370,516 - +0.1 1,370,526 + PFLU_RS06125 0.12 -0.5 1,370,557 + PFLU_RS06125 0.21 +0.2 1,370,558 - PFLU_RS06125 0.22 -0.3 1,370,558 - PFLU_RS06125 0.22 -0.1 1,370,574 + PFLU_RS06125 0.26 +0.6 1,370,574 + PFLU_RS06125 0.26 +0.3 1,370,574 + PFLU_RS06125 0.26 +1.7 1,370,574 + PFLU_RS06125 0.26 -0.4 1,370,574 + PFLU_RS06125 0.26 -0.6 1,370,574 + PFLU_RS06125 0.26 +0.4 1,370,574 + PFLU_RS06125 0.26 +0.2 1,370,574 + PFLU_RS06125 0.26 -0.3 1,370,575 - PFLU_RS06125 0.27 +0.4 1,370,575 - PFLU_RS06125 0.27 -3.0 1,370,625 + PFLU_RS06125 0.41 +0.1 1,370,625 + PFLU_RS06125 0.41 +0.6 1,370,626 - PFLU_RS06125 0.41 -2.4 1,370,626 - PFLU_RS06125 0.41 -0.3 1,370,626 - PFLU_RS06125 0.41 -1.1 1,370,626 - PFLU_RS06125 0.41 -0.1 1,370,704 - PFLU_RS06125 0.64 +0.8 1,370,760 + PFLU_RS06125 0.80 +0.2 1,370,839 + +0.6 1,370,914 + -0.0 1,370,914 + -1.4 1,370,914 + -0.7 1,370,914 + +1.1 1,370,915 - -1.1 1,370,915 - -1.2 1,370,915 - -1.7 1,370,915 - -0.0 1,370,915 - -0.1 1,370,915 - +1.1 1,370,934 + +0.6 1,370,934 + -0.9 1,370,934 + +0.3 1,370,947 + +1.4 1,370,948 - -1.0 1,371,090 + +0.5 1,371,091 - -0.3 1,371,264 + +0.5 1,371,264 + +0.7 1,371,319 + PFLU_RS06130 0.12 -0.1 1,371,320 - PFLU_RS06130 0.12 -0.3 1,371,459 + PFLU_RS06130 0.17 +0.3 1,371,459 + PFLU_RS06130 0.17 -0.3 1,371,459 + PFLU_RS06130 0.17 -0.0 1,371,459 + PFLU_RS06130 0.17 -1.6 1,371,459 + PFLU_RS06130 0.17 -0.6 1,371,459 + PFLU_RS06130 0.17 -0.3 1,371,460 - PFLU_RS06130 0.17 +1.1 1,371,460 - PFLU_RS06130 0.17 +0.2 1,371,460 - PFLU_RS06130 0.17 +0.2 1,371,460 - PFLU_RS06130 0.17 +1.9 1,371,460 - PFLU_RS06130 0.17 +0.6 1,371,460 - PFLU_RS06130 0.17 +0.7 1,371,460 - PFLU_RS06130 0.17 -0.2 1,371,666 + PFLU_RS06130 0.25 -0.2 1,371,666 + PFLU_RS06130 0.25 +1.4 1,371,667 - PFLU_RS06130 0.25 -2.3 1,371,667 - PFLU_RS06130 0.25 +0.6 1,371,667 - PFLU_RS06130 0.25 -0.2
Or see this region's nucleotide sequence