Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS05360

Experiment: D,L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Lactate (C)
1,193,176	-		PFLU_RS05355	0.65	-0.2
1,193,268	+		PFLU_RS05355	0.73	-0.4
1,193,268	+		PFLU_RS05355	0.73	-1.6
1,193,268	+		PFLU_RS05355	0.73	+0.5
1,193,269	-		PFLU_RS05355	0.73	+0.2
1,193,269	-		PFLU_RS05355	0.73	+0.4
1,193,274	+		PFLU_RS05355	0.74	+0.7
1,193,274	+		PFLU_RS05355	0.74	+0.7
1,193,275	-		PFLU_RS05355	0.74	+0.8
1,193,275	-		PFLU_RS05355	0.74	+0.3
1,193,328	+		PFLU_RS05355	0.78	+0.7
1,193,328	+		PFLU_RS05355	0.78	-1.7
1,193,329	-		PFLU_RS05355	0.78	+0.9
1,193,331	+		PFLU_RS05355	0.79	-0.2
1,193,331	+		PFLU_RS05355	0.79	+1.1
1,193,331	+		PFLU_RS05355	0.79	+0.3
1,193,331	+		PFLU_RS05355	0.79	-3.5
1,193,331	+		PFLU_RS05355	0.79	-0.2
1,193,331	+		PFLU_RS05355	0.79	-0.4
1,193,331	+		PFLU_RS05355	0.79	+0.7
1,193,331	+		PFLU_RS05355	0.79	-0.4
1,193,331	+		PFLU_RS05355	0.79	-0.4
1,193,331	+		PFLU_RS05355	0.79	+0.1
1,193,331	+		PFLU_RS05355	0.79	-0.3
1,193,331	+		PFLU_RS05355	0.79	+0.1
1,193,331	+		PFLU_RS05355	0.79	-0.8
1,193,331	+		PFLU_RS05355	0.79	+0.9
1,193,331	+		PFLU_RS05355	0.79	-0.5
1,193,332	-		PFLU_RS05355	0.79	+0.8
1,193,332	-		PFLU_RS05355	0.79	+0.2
1,193,332	-		PFLU_RS05355	0.79	+0.1
1,193,332	-		PFLU_RS05355	0.79	-1.5
1,193,332	-		PFLU_RS05355	0.79	+0.6
1,193,332	-		PFLU_RS05355	0.79	+0.6
1,193,332	-		PFLU_RS05355	0.79	-0.4
1,193,332	-		PFLU_RS05355	0.79	-0.1
1,193,332	-		PFLU_RS05355	0.79	-1.8
1,193,332	-		PFLU_RS05355	0.79	-1.0
1,193,332	-		PFLU_RS05355	0.79	-1.1
1,193,332	-		PFLU_RS05355	0.79	+0.4
1,193,332	-		PFLU_RS05355	0.79	-0.8
1,193,332	-		PFLU_RS05355	0.79	+0.5
1,193,385	+		PFLU_RS05355	0.83	-0.5
1,193,391	+		PFLU_RS05355	0.84	+1.0
1,193,391	+		PFLU_RS05355	0.84	-0.6
1,193,392	-		PFLU_RS05355	0.84	-0.2
1,193,399	+		PFLU_RS05355	0.84	+0.4
1,193,478	+				+0.1
1,193,478	+				+0.5
1,193,478	+				+0.3
1,193,478	+				-0.4
1,193,478	+				+1.2
1,193,478	+				-1.4
1,193,478	+				-0.7
1,193,479	-				+1.4
1,193,479	-				-1.2
1,193,479	-				-1.6
1,193,479	-				-0.2
1,193,479	-				-0.2
1,193,479	-				+0.3
1,193,479	-				-0.1
1,193,479	-				+0.0
1,193,498	+				+0.6
1,193,499	-				-0.4
1,193,499	-				-0.6
1,193,531	+				+0.2
1,193,531	+				-0.8
1,193,531	+				-0.1
1,193,531	+				+0.1
1,193,531	+				+0.2
1,193,531	+				-2.1
1,193,531	+				+0.7
1,193,532	-				+0.4
1,193,532	-				+0.1
1,193,532	-				-0.2
1,193,532	-				+0.5
1,193,532	-				+0.9
1,193,532	-				-0.7
1,193,532	-				-0.4
1,193,532	-				+0.6
1,193,532	-				+1.3
1,193,532	-				+0.1
1,193,535	+				+0.3
1,193,535	+				+1.4
1,193,535	+				+1.6
1,193,535	+				+0.1
1,193,535	+				-0.2
1,193,535	+				+0.8
1,193,536	-				+0.9
1,193,536	-				-1.1
1,193,536	-				-1.5
1,193,536	-				+1.2
1,193,536	-				-1.5
1,193,536	-				-0.6
1,193,536	-				+0.3
1,193,536	-				+0.2
1,193,561	+				+1.0
1,193,592	+				+0.2
1,193,592	+				-0.4
1,193,593	-				-1.2
1,193,593	-				+1.1
1,193,593	-				-0.5
1,193,593	-				-1.3
1,193,593	-				+0.7
1,193,593	-				+1.3
1,193,593	-				-0.6
1,193,697	+				+0.2
1,193,698	-				-1.2
1,193,754	+				-0.3
1,193,754	+				+0.3
1,193,754	+				-1.6
1,193,754	+				+0.8
1,193,754	+				+0.5
1,193,754	+				-1.6
1,193,755	-				-1.7
1,193,760	-				+0.3
1,193,760	-				-0.6
1,193,866	+				+0.8
1,193,866	+				+0.3
1,193,866	+				+0.5
1,193,866	+				+0.0
1,193,866	+				+0.4
1,193,866	+				+0.4
1,193,866	+				-0.6
1,193,866	+				-0.5
1,193,877	+				+0.1
1,193,878	-				-0.3
1,193,878	-				+0.6
1,193,878	-				+0.9
1,193,955	+				-0.2
1,194,000	-				-0.4
1,194,000	-				+0.0
1,194,177	+				+0.3
1,194,202	+				-2.2
1,194,202	+				-1.2
1,194,206	+				+0.4
1,194,206	+				-0.4
1,194,206	+				-0.2
1,194,206	+				-0.5
1,194,206	+				+0.4
1,194,206	+				+0.8
1,194,206	+				-0.2
1,194,207	-				+0.6
1,194,207	-				+1.4
1,194,207	-				-0.8
1,194,207	-				+0.8
1,194,207	-				-1.3
1,194,207	-				+0.0
1,194,207	-				+0.2
1,194,207	-				+0.3
1,194,207	-				-0.6
1,194,448	-		PFLU_RS05360	0.14	-1.0
1,194,516	-		PFLU_RS05360	0.17	+0.7
1,194,516	-		PFLU_RS05360	0.17	-0.3
1,194,587	+		PFLU_RS05360	0.20	-0.3
1,194,587	+		PFLU_RS05360	0.20	-0.1
1,194,588	-		PFLU_RS05360	0.20	+0.4
1,194,588	-		PFLU_RS05360	0.20	+0.4
1,194,765	-		PFLU_RS05360	0.27	-0.9
1,194,781	+		PFLU_RS05360	0.28	+1.2
1,194,833	+		PFLU_RS05360	0.30	-0.3
1,195,289	+		PFLU_RS05360	0.50	-1.5
1,195,289	+		PFLU_RS05360	0.50	+1.1
1,195,290	-		PFLU_RS05360	0.50	+0.1
1,195,290	-		PFLU_RS05360	0.50	-0.8
1,195,290	-		PFLU_RS05360	0.50	+0.1
1,195,293	+		PFLU_RS05360	0.50	-0.2
1,195,293	+		PFLU_RS05360	0.50	-3.6
1,195,293	+		PFLU_RS05360	0.50	+0.3
1,195,294	-		PFLU_RS05360	0.50	+0.1
1,195,294	-		PFLU_RS05360	0.50	+0.1
1,195,294	-		PFLU_RS05360	0.50	-0.3
1,195,294	-		PFLU_RS05360	0.50	-1.2
1,195,294	-		PFLU_RS05360	0.50	-0.2
1,195,294	-		PFLU_RS05360	0.50	+0.3
1,195,294	-		PFLU_RS05360	0.50	+0.1
1,195,414	+		PFLU_RS05360	0.55	+0.6
1,195,414	+		PFLU_RS05360	0.55	-1.4
1,195,414	+		PFLU_RS05360	0.55	-1.4
1,195,414	+		PFLU_RS05360	0.55	+0.6
1,195,414	+		PFLU_RS05360	0.55	+0.8
1,195,415	-		PFLU_RS05360	0.55	-0.4
1,195,415	-		PFLU_RS05360	0.55	+0.4
1,195,415	-		PFLU_RS05360	0.55	-0.7
1,195,415	-		PFLU_RS05360	0.55	+0.3
1,195,415	-		PFLU_RS05360	0.55	+0.1
1,195,415	-		PFLU_RS05360	0.55	+0.5
1,195,491	-		PFLU_RS05360	0.58	-0.5
1,195,517	-		PFLU_RS05360	0.59	+0.3
1,195,565	+		PFLU_RS05360	0.61	-1.8
1,195,659	-		PFLU_RS05360	0.66	-0.8
1,195,659	-		PFLU_RS05360	0.66	+0.4
1,195,751	+		PFLU_RS05360	0.69	-0.2
1,195,752	-		PFLU_RS05360	0.69	+0.2
1,195,972	+		PFLU_RS05360	0.79	-1.0
1,195,972	+		PFLU_RS05360	0.79	-1.7
1,195,972	+		PFLU_RS05360	0.79	-1.4
1,195,973	-		PFLU_RS05360	0.79	-0.1
1,195,973	-		PFLU_RS05360	0.79	+0.9
1,196,368	-				-1.3
1,196,393	+				+0.3
1,196,393	+				+1.0
1,196,393	+				-0.8
1,196,394	-				+0.6
1,196,394	-				+0.6
1,196,462	+				-0.9
1,196,462	+				+1.3
1,196,462	+				-0.1
1,196,462	+				+0.2
1,196,462	+				-1.2
1,196,462	+				+0.9
1,196,462	+				+1.1
1,196,462	+				+0.0
1,196,463	-				+0.0
1,196,463	-				+0.3
1,196,463	-				-0.0
1,196,463	-				-1.6
1,196,463	-				-1.0
1,196,463	-				+1.5
1,196,463	-				+0.6
1,196,463	-				+0.6
1,196,463	-				+0.2
1,196,467	-				-0.6
1,196,467	-				+0.3
1,196,467	-				+0.1
1,196,467	-				-1.3
1,196,467	-				+0.0
1,196,535	+				+0.1
1,196,535	+				+0.8
1,196,535	+				-2.1
1,196,536	-				+0.5
1,196,536	-				+0.5
1,196,536	-				-1.5
1,196,536	-				-0.5
1,196,569	+				-0.3
1,196,569	+				+0.3
1,196,570	-				-0.2
1,196,595	-				+1.2
1,196,651	+				-0.7
1,196,652	-				+0.3
1,196,766	-		PFLU_RS05365	0.13	+0.2
1,196,899	+		PFLU_RS05365	0.33	+0.4
1,196,926	+		PFLU_RS05365	0.37	+0.5
1,196,927	-		PFLU_RS05365	0.37	-0.5
1,196,927	-		PFLU_RS05365	0.37	+0.6
1,196,935	+		PFLU_RS05365	0.38	+0.2
1,196,936	-		PFLU_RS05365	0.38	+0.6
1,196,936	-		PFLU_RS05365	0.38	+1.5
1,196,951	+		PFLU_RS05365	0.41	-1.2
1,196,951	+		PFLU_RS05365	0.41	+0.0
1,197,025	+		PFLU_RS05365	0.52	-0.7
1,197,026	-		PFLU_RS05365	0.52	+1.0
1,197,077	+		PFLU_RS05365	0.59	+0.5
1,197,077	+		PFLU_RS05365	0.59	+0.2
1,197,077	+		PFLU_RS05365	0.59	-0.2
1,197,077	+		PFLU_RS05365	0.59	+0.7
1,197,077	+		PFLU_RS05365	0.59	+0.5
1,197,077	+		PFLU_RS05365	0.59	+0.2
1,197,077	+		PFLU_RS05365	0.59	+0.7
1,197,077	+		PFLU_RS05365	0.59	-0.8
1,197,077	+		PFLU_RS05365	0.59	+0.3
1,197,077	+		PFLU_RS05365	0.59	+0.5
1,197,077	+		PFLU_RS05365	0.59	+0.3
1,197,078	-		PFLU_RS05365	0.59	+3.0
1,197,078	-		PFLU_RS05365	0.59	+0.8
1,197,078	-		PFLU_RS05365	0.59	-0.4
1,197,078	-		PFLU_RS05365	0.59	+0.8
1,197,078	-		PFLU_RS05365	0.59	+0.5
1,197,078	-		PFLU_RS05365	0.59	+1.1
1,197,078	-		PFLU_RS05365	0.59	-0.9
1,197,079	+		PFLU_RS05365	0.60	-0.3
1,197,079	+		PFLU_RS05365	0.60	+0.7
1,197,079	+		PFLU_RS05365	0.60	+0.1
1,197,079	+		PFLU_RS05365	0.60	+0.9
1,197,079	+		PFLU_RS05365	0.60	-0.6
1,197,079	+		PFLU_RS05365	0.60	+0.5
1,197,079	+		PFLU_RS05365	0.60	-0.0
1,197,080	-		PFLU_RS05365	0.60	-1.8
1,197,080	-		PFLU_RS05365	0.60	+0.8
1,197,080	-		PFLU_RS05365	0.60	-0.5
1,197,080	-		PFLU_RS05365	0.60	+0.8
1,197,080	-		PFLU_RS05365	0.60	-0.9
1,197,080	-		PFLU_RS05365	0.60	-1.7
1,197,083	+		PFLU_RS05365	0.60	-0.9
1,197,083	+		PFLU_RS05365	0.60	-0.3
1,197,083	+		PFLU_RS05365	0.60	-1.7
1,197,083	+		PFLU_RS05365	0.60	-0.2
1,197,083	+		PFLU_RS05365	0.60	-0.3
1,197,083	+		PFLU_RS05365	0.60	-0.3
1,197,083	+		PFLU_RS05365	0.60	+0.4
1,197,083	+		PFLU_RS05365	0.60	-0.9
1,197,083	+		PFLU_RS05365	0.60	-0.7
1,197,084	-		PFLU_RS05365	0.60	+0.8
1,197,084	-		PFLU_RS05365	0.60	-0.0
1,197,084	-		PFLU_RS05365	0.60	+0.7
1,197,084	-		PFLU_RS05365	0.60	-1.1
1,197,084	-		PFLU_RS05365	0.60	+0.1
1,197,084	-		PFLU_RS05365	0.60	-0.4
1,197,084	-		PFLU_RS05365	0.60	+0.3
1,197,084	-		PFLU_RS05365	0.60	-2.4
1,197,084	-		PFLU_RS05365	0.60	+0.6
1,197,084	-		PFLU_RS05365	0.60	+0.2
1,197,084	-		PFLU_RS05365	0.60	-1.1
1,197,084	-		PFLU_RS05365	0.60	+0.3
1,197,084	-		PFLU_RS05365	0.60	+1.3
1,197,084	-		PFLU_RS05365	0.60	+0.8
1,197,084	-		PFLU_RS05365	0.60	-0.3
1,197,084	-		PFLU_RS05365	0.60	+0.2
1,197,162	-		PFLU_RS05365	0.72	-0.3
1,197,174	+		PFLU_RS05365	0.74	-1.0
1,197,175	-		PFLU_RS05365	0.74	-0.6
1,197,175	-		PFLU_RS05365	0.74	+0.3
1,197,350	+				+0.6
1,197,350	+				+0.2
1,197,350	+				-0.1
1,197,351	-				+0.5
1,197,351	-				-1.3
1,197,351	-				+1.1
1,197,351	-				-0.5
1,197,414	+				+0.6
1,197,414	+				+0.7
1,197,414	+				+0.0
1,197,414	+				-0.2
1,197,415	-				-0.8
1,197,415	-				-0.1
1,197,415	-				-1.5
1,197,415	-				+0.9
1,197,415	-				+0.6
1,197,415	-				+1.7
1,197,449	-				-0.1