Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt napH and napG overlap by 14 nucleotides napG and napA are separated by 6 nucleotides napA and napD overlap by 4 nucleotides napD and napF overlap by 11 nucleotides napF and yojO are separated by 108 nucleotides
b2204: napH - quinol dehydrogenase membrane component (NCBI), at 2,296,737 to 2,297,600
napH
b2205: napG - quinol dehydrogenase periplasmic component (NCBI), at 2,297,587 to 2,298,282
napG
b2206: napA - nitrate reductase, periplasmic, large subunit (NCBI), at 2,298,289 to 2,300,775
napA
b2207: napD - assembly protein for periplasmic nitrate reductase (NCBI), at 2,300,772 to 2,301,035
napD
b2208: napF - ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) (NCBI), at 2,301,025 to 2,301,519
napF
b4604: yojO - hypothetical protein (RefSeq), at 2,301,628 to 2,301,792
yojO
Position (kb)
2298
2299
2300
2301 Strain fitness (log2 ratio)
-1
0
1
2 at 2297.341 kb on + strand, within napH at 2297.444 kb on - strand, within napH at 2297.464 kb on + strand, within napH at 2297.476 kb on - strand, within napH at 2297.476 kb on - strand, within napH at 2297.517 kb on + strand at 2297.535 kb on - strand at 2297.535 kb on - strand at 2297.585 kb on - strand at 2297.585 kb on - strand at 2297.615 kb on - strand at 2297.676 kb on - strand, within napG at 2297.791 kb on + strand, within napG at 2297.798 kb on + strand, within napG at 2297.949 kb on + strand, within napG at 2297.953 kb on - strand, within napG at 2298.068 kb on + strand, within napG at 2298.073 kb on + strand, within napG at 2298.161 kb on - strand, within napG at 2298.190 kb on + strand, within napG at 2298.194 kb on + strand, within napG at 2298.340 kb on - strand at 2298.340 kb on - strand at 2298.469 kb on + strand at 2298.562 kb on + strand, within napA at 2298.565 kb on + strand, within napA at 2298.570 kb on - strand, within napA at 2298.572 kb on + strand, within napA at 2298.578 kb on - strand, within napA at 2298.582 kb on + strand, within napA at 2298.582 kb on + strand, within napA at 2298.604 kb on - strand, within napA at 2298.604 kb on - strand, within napA at 2298.790 kb on + strand, within napA at 2298.882 kb on - strand, within napA at 2298.981 kb on + strand, within napA at 2298.981 kb on + strand, within napA at 2298.983 kb on + strand, within napA at 2298.983 kb on + strand, within napA at 2299.128 kb on + strand, within napA at 2299.128 kb on + strand, within napA at 2299.139 kb on + strand, within napA at 2299.195 kb on + strand, within napA at 2299.195 kb on + strand, within napA at 2299.267 kb on - strand, within napA at 2299.299 kb on + strand, within napA at 2299.299 kb on + strand, within napA at 2299.342 kb on - strand, within napA at 2299.381 kb on + strand, within napA at 2299.467 kb on + strand, within napA at 2299.503 kb on + strand, within napA at 2299.503 kb on + strand, within napA at 2299.519 kb on - strand, within napA at 2299.519 kb on - strand, within napA at 2299.679 kb on + strand, within napA at 2299.697 kb on + strand, within napA at 2299.697 kb on + strand, within napA at 2299.817 kb on - strand, within napA at 2299.859 kb on + strand, within napA at 2300.072 kb on + strand, within napA at 2300.072 kb on + strand, within napA at 2300.114 kb on + strand, within napA at 2300.239 kb on + strand, within napA at 2300.240 kb on - strand, within napA at 2300.245 kb on - strand, within napA at 2300.338 kb on + strand, within napA at 2300.365 kb on + strand, within napA at 2300.365 kb on + strand, within napA at 2300.421 kb on - strand, within napA at 2300.421 kb on - strand, within napA at 2300.605 kb on + strand at 2300.832 kb on + strand, within napD at 2300.841 kb on + strand, within napD at 2300.865 kb on - strand, within napD at 2300.965 kb on + strand, within napD at 2301.037 kb on + strand at 2301.037 kb on + strand at 2301.060 kb on + strand at 2301.060 kb on + strand at 2301.084 kb on + strand, within napF at 2301.183 kb on - strand, within napF at 2301.210 kb on - strand, within napF at 2301.210 kb on - strand, within napF at 2301.256 kb on - strand, within napF at 2301.257 kb on - strand, within napF at 2301.286 kb on + strand, within napF at 2301.415 kb on - strand, within napF at 2301.496 kb on - strand at 2301.620 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,297,341 + napH b2204 0.70 +0.1 2,297,444 - napH b2204 0.82 -0.2 2,297,464 + napH b2204 0.84 +0.0 2,297,476 - napH b2204 0.86 +0.8 2,297,476 - napH b2204 0.86 +0.7 2,297,517 + +0.3 2,297,535 - -1.1 2,297,535 - +0.7 2,297,585 - -0.1 2,297,585 - -1.0 2,297,615 - -0.1 2,297,676 - napG b2205 0.13 -1.0 2,297,791 + napG b2205 0.29 +0.6 2,297,798 + napG b2205 0.30 -0.1 2,297,949 + napG b2205 0.52 +0.9 2,297,953 - napG b2205 0.53 +0.1 2,298,068 + napG b2205 0.69 -0.0 2,298,073 + napG b2205 0.70 +0.4 2,298,161 - napG b2205 0.82 +0.2 2,298,190 + napG b2205 0.87 +0.1 2,298,194 + napG b2205 0.87 -0.8 2,298,340 - +0.0 2,298,340 - +0.2 2,298,469 + +0.3 2,298,562 + napA b2206 0.11 -0.1 2,298,565 + napA b2206 0.11 +0.6 2,298,570 - napA b2206 0.11 -0.7 2,298,572 + napA b2206 0.11 -0.4 2,298,578 - napA b2206 0.12 +0.3 2,298,582 + napA b2206 0.12 +0.3 2,298,582 + napA b2206 0.12 +0.5 2,298,604 - napA b2206 0.13 +0.2 2,298,604 - napA b2206 0.13 +0.8 2,298,790 + napA b2206 0.20 +0.7 2,298,882 - napA b2206 0.24 +0.6 2,298,981 + napA b2206 0.28 -0.1 2,298,981 + napA b2206 0.28 -0.9 2,298,983 + napA b2206 0.28 +0.1 2,298,983 + napA b2206 0.28 -0.0 2,299,128 + napA b2206 0.34 -0.6 2,299,128 + napA b2206 0.34 +0.5 2,299,139 + napA b2206 0.34 +0.3 2,299,195 + napA b2206 0.36 +0.4 2,299,195 + napA b2206 0.36 -0.5 2,299,267 - napA b2206 0.39 -0.3 2,299,299 + napA b2206 0.41 -0.4 2,299,299 + napA b2206 0.41 +0.4 2,299,342 - napA b2206 0.42 +0.3 2,299,381 + napA b2206 0.44 +0.6 2,299,467 + napA b2206 0.47 +0.4 2,299,503 + napA b2206 0.49 +0.7 2,299,503 + napA b2206 0.49 +0.2 2,299,519 - napA b2206 0.49 -0.3 2,299,519 - napA b2206 0.49 -1.6 2,299,679 + napA b2206 0.56 +0.2 2,299,697 + napA b2206 0.57 +1.0 2,299,697 + napA b2206 0.57 +0.6 2,299,817 - napA b2206 0.61 +0.0 2,299,859 + napA b2206 0.63 -0.8 2,300,072 + napA b2206 0.72 +0.6 2,300,072 + napA b2206 0.72 -0.4 2,300,114 + napA b2206 0.73 +0.1 2,300,239 + napA b2206 0.78 -0.1 2,300,240 - napA b2206 0.78 +0.5 2,300,245 - napA b2206 0.79 +0.7 2,300,338 + napA b2206 0.82 +0.3 2,300,365 + napA b2206 0.83 -0.1 2,300,365 + napA b2206 0.83 -0.2 2,300,421 - napA b2206 0.86 -0.8 2,300,421 - napA b2206 0.86 +0.8 2,300,605 + +2.1 2,300,832 + napD b2207 0.23 -0.5 2,300,841 + napD b2207 0.26 -0.5 2,300,865 - napD b2207 0.35 +0.2 2,300,965 + napD b2207 0.73 +0.1 2,301,037 + +1.0 2,301,037 + +0.9 2,301,060 + +0.8 2,301,060 + +0.6 2,301,084 + napF b2208 0.12 +0.4 2,301,183 - napF b2208 0.32 -0.1 2,301,210 - napF b2208 0.37 +1.6 2,301,210 - napF b2208 0.37 +1.6 2,301,256 - napF b2208 0.47 +0.0 2,301,257 - napF b2208 0.47 -0.3 2,301,286 + napF b2208 0.53 -0.5 2,301,415 - napF b2208 0.79 -0.1 2,301,496 - +0.0 2,301,620 + -0.3
Or see this region's nucleotide sequence