Strain Fitness in Escherichia coli BW25113 around b1871
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
1,950,475 | + | yecN | b1869 | 0.47 | -0.6 |
1,950,475 | + | yecN | b1869 | 0.47 | +0.6 |
1,950,509 | + | yecN | b1869 | 0.55 | +0.4 |
1,950,517 | - | yecN | b1869 | 0.57 | -0.6 |
1,950,525 | + | yecN | b1869 | 0.59 | -1.1 |
1,950,525 | + | yecN | b1869 | 0.59 | +0.3 |
1,950,612 | + | yecN | b1869 | 0.81 | -0.1 |
1,950,612 | + | yecN | b1869 | 0.81 | +0.6 |
1,950,613 | - | yecN | b1869 | 0.82 | +0.0 |
1,950,613 | - | yecN | b1869 | 0.82 | +0.9 |
1,950,743 | + | +0.3 | |||
1,951,029 | + | yecO | b1870 | 0.41 | +0.2 |
1,951,519 | - | +0.2 | |||
1,951,579 | + | yecP | b1871 | 0.12 | -0.2 |
1,951,831 | - | yecP | b1871 | 0.38 | -0.4 |
1,951,831 | - | yecP | b1871 | 0.38 | +0.7 |
1,951,834 | + | yecP | b1871 | 0.38 | +0.0 |
1,951,834 | + | yecP | b1871 | 0.38 | +1.8 |
1,951,868 | + | yecP | b1871 | 0.41 | +0.4 |
1,951,912 | + | yecP | b1871 | 0.46 | +0.0 |
1,951,912 | + | yecP | b1871 | 0.46 | -1.0 |
1,951,920 | + | yecP | b1871 | 0.47 | +0.6 |
1,952,017 | - | yecP | b1871 | 0.57 | -0.6 |
1,952,017 | - | yecP | b1871 | 0.57 | +0.6 |
1,952,288 | - | yecP | b1871 | 0.85 | -0.1 |
1,952,330 | - | yecP | b1871 | 0.89 | -0.1 |
1,952,330 | - | yecP | b1871 | 0.89 | -1.3 |
1,952,419 | + | -0.1 | |||
1,952,530 | + | +0.2 | |||
1,952,786 | + | +0.0 | |||
1,952,794 | - | -0.1 | |||
1,952,794 | - | +1.0 | |||
1,952,972 | + | bisZ | b1872 | 0.15 | +1.3 |
1,952,986 | + | bisZ | b1872 | 0.16 | +1.0 |
1,953,062 | - | bisZ | b1872 | 0.19 | +0.6 |
1,953,078 | + | bisZ | b1872 | 0.20 | +0.1 |
1,953,208 | - | bisZ | b1872 | 0.25 | +2.0 |
1,953,262 | - | bisZ | b1872 | 0.27 | +0.4 |
1,953,262 | - | bisZ | b1872 | 0.27 | -0.4 |
1,953,262 | - | bisZ | b1872 | 0.27 | -0.2 |
1,953,270 | + | bisZ | b1872 | 0.27 | +0.2 |
1,953,298 | - | bisZ | b1872 | 0.29 | +0.8 |
Or see this region's nucleotide sequence