Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS31690

Experiment: D-Xylose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose (C)
4,296,069	+		PFLU_RS18985	0.47	+0.8
4,296,069	+		PFLU_RS18985	0.47	-0.5
4,296,163	-		PFLU_RS18985	0.61	+0.3
4,296,171	+		PFLU_RS18985	0.63	-0.2
4,296,171	+		PFLU_RS18985	0.63	+1.2
4,296,171	+		PFLU_RS18985	0.63	-0.5
4,296,172	-		PFLU_RS18985	0.63	+0.5
4,296,172	-		PFLU_RS18985	0.63	+0.2
4,296,172	-		PFLU_RS18985	0.63	-0.0
4,296,400	+				+0.6
4,296,418	+				+0.1
4,296,418	+				+0.8
4,296,418	+				-0.4
4,296,419	-				-0.4
4,296,419	-				+0.5
4,296,419	-				-0.1
4,296,419	-				+1.3
4,296,442	+				-0.2
4,296,443	-				+0.2
4,296,453	+				-0.3
4,296,453	+				-0.1
4,296,453	+				+1.0
4,296,453	+				+0.2
4,296,454	-				-0.8
4,296,454	-				+1.0
4,296,454	-				+0.5
4,296,457	-				+0.6
4,296,463	+				+0.4
4,296,463	+				-0.9
4,296,463	+				-0.5
4,296,463	+				-1.9
4,296,463	+				+1.2
4,296,473	+				+1.1
4,296,473	+				-0.1
4,296,473	+				+1.4
4,296,473	+				+0.6
4,296,474	-				+1.3
4,296,474	-				+0.7
4,296,477	+				+1.2
4,296,477	+				+0.6
4,296,477	+				+0.6
4,296,477	+				-1.3
4,296,478	-				+1.2
4,296,478	-				+0.9
4,296,482	+				+0.7
4,296,482	+				-2.5
4,296,486	+				-0.5
4,296,486	+				-1.1
4,296,486	+				-0.0
4,296,486	+				-0.1
4,296,486	+				+0.1
4,296,486	+				+0.7
4,296,486	+				-1.6
4,296,486	+				-0.9
4,296,486	+				-0.7
4,296,486	+				+1.0
4,296,486	+				-0.0
4,296,486	+				+0.6
4,296,486	+				+0.8
4,296,486	+				-0.5
4,296,486	+				-0.4
4,296,486	+				+0.1
4,296,486	+				+0.1
4,296,486	+				+0.2
4,296,486	+				-0.6
4,296,486	+				+0.5
4,296,486	+				+0.6
4,296,487	-				-1.5
4,296,487	-				-1.9
4,296,487	-				+0.5
4,296,487	-				-0.4
4,296,487	-				-0.2
4,296,487	-				+0.9
4,296,487	-				-1.0
4,296,487	-				-0.0
4,296,487	-				-0.8
4,296,487	-				+0.0
4,296,487	-				+0.6
4,296,487	-				-0.1
4,296,487	-				+0.5
4,296,487	-				+0.7
4,296,487	-				-1.4
4,296,487	-				+1.0
4,296,487	-				-0.2
4,296,487	-				-0.1
4,296,487	-				+0.5
4,296,487	-				+0.7
4,296,487	-				+1.1
4,296,487	-				+0.7
4,296,487	-				-2.2
4,296,487	-				-0.9
4,296,487	-				-0.1
4,296,489	+				+0.5
4,296,489	+				+0.5
4,296,489	+				-0.6
4,296,489	+				+0.5
4,296,490	-				-0.6
4,296,501	+				+0.6
4,296,501	+				+0.6
4,296,501	+				-1.4
4,296,502	-				-0.1
4,296,502	-				-1.3
4,296,502	-				+0.6
4,296,502	-				+0.2
4,296,502	-				+0.0
4,296,633	+		PFLU_RS18990	0.27	+0.7
4,296,647	+		PFLU_RS18990	0.31	+0.4
4,296,647	+		PFLU_RS18990	0.31	-1.2
4,296,648	-		PFLU_RS18990	0.32	-0.1
4,296,648	-		PFLU_RS18990	0.32	+2.1
4,296,648	-		PFLU_RS18990	0.32	-0.4
4,296,648	-		PFLU_RS18990	0.32	-0.5
4,296,648	-		PFLU_RS18990	0.32	+0.8
4,296,648	-		PFLU_RS18990	0.32	-0.7
4,296,648	-		PFLU_RS18990	0.32	+0.3
4,296,677	-		PFLU_RS18990	0.40	-0.8
4,296,677	-		PFLU_RS18990	0.40	+0.0
4,296,718	+		PFLU_RS18990	0.52	-0.7
4,296,719	-		PFLU_RS18990	0.52	-0.0
4,296,759	+		PFLU_RS18990	0.63	+0.1
4,296,759	+		PFLU_RS18990	0.63	-0.6
4,296,816	+		PFLU_RS18990	0.79	+0.9
4,296,816	+		PFLU_RS18990	0.79	-0.6
4,296,816	+		PFLU_RS18990	0.79	-0.4
4,296,816	+		PFLU_RS18990	0.79	+0.4
4,296,816	+		PFLU_RS18990	0.79	-1.1
4,296,817	-		PFLU_RS18990	0.80	-1.8
4,296,817	-		PFLU_RS18990	0.80	+1.5
4,296,817	-		PFLU_RS18990	0.80	+0.3
4,296,817	-		PFLU_RS18990	0.80	+0.7
4,296,817	-		PFLU_RS18990	0.80	-0.0
4,296,817	-		PFLU_RS18990	0.80	-0.6
4,296,817	-		PFLU_RS18990	0.80	-0.1
4,296,827	+		PFLU_RS18990	0.83	+0.5
4,296,828	-		PFLU_RS18990	0.83	-0.3
4,296,828	-		PFLU_RS18990	0.83	-1.1
4,296,911	+				+0.1
4,296,911	+				-0.2
4,296,912	-				+0.0
4,296,957	-				-0.9
4,296,989	-				+0.3
4,297,003	+				+0.8
4,297,003	+				-0.1
4,297,003	+				-0.7
4,297,003	+				-0.1
4,297,003	+				+0.1
4,297,003	+				+1.7
4,297,003	+				+0.4
4,297,003	+				+0.2
4,297,003	+				+1.0
4,297,004	-				+1.4
4,297,004	-				+0.3
4,297,004	-				-0.4
4,297,004	-				+0.2
4,297,004	-				+0.8
4,297,004	-				+1.1
4,297,004	-				+0.2
4,297,038	-				+0.5
4,297,206	-		PFLU_RS31690	0.78	-0.1
4,297,228	-		PFLU_RS31690	0.88	-2.0
4,297,234	+				+0.7
4,297,234	+				+1.0
4,297,234	+				+0.5
4,297,235	-				-0.5
4,297,235	-				+1.2
4,297,316	+				-0.8
4,297,316	+				+0.5
4,297,316	+				-0.7
4,297,316	+				+0.8
4,297,316	+				+0.2
4,297,316	+				-2.1
4,297,317	-				-0.1
4,297,317	-				-0.0
4,297,317	-				+0.3
4,297,317	-				+0.5
4,297,319	+				-2.2
4,297,319	+				-0.0
4,297,338	+				-1.8
4,297,338	+				+0.1
4,297,338	+				+0.1
4,297,338	+				+0.5
4,297,339	-				-0.7
4,297,339	-				+0.5
4,297,339	-				-0.7
4,297,355	+				+0.8
4,297,356	-				+0.1
4,297,418	-				+2.6
4,297,437	+				+0.7
4,297,437	+				+0.4
4,297,567	-		PFLU_RS18995	0.18	-1.1
4,297,587	+		PFLU_RS18995	0.20	-0.4
4,297,587	+		PFLU_RS18995	0.20	-0.6
4,297,588	-		PFLU_RS18995	0.20	-0.0
4,297,605	+		PFLU_RS18995	0.22	-1.8
4,297,605	+		PFLU_RS18995	0.22	+1.0
4,297,605	+		PFLU_RS18995	0.22	+1.2
4,297,605	+		PFLU_RS18995	0.22	-0.8
4,297,605	+		PFLU_RS18995	0.22	+0.2
4,297,606	-		PFLU_RS18995	0.22	+0.5
4,297,606	-		PFLU_RS18995	0.22	-1.2
4,297,606	-		PFLU_RS18995	0.22	-2.4
4,297,606	-		PFLU_RS18995	0.22	-0.4
4,297,614	-		PFLU_RS18995	0.22	+0.4
4,297,614	-		PFLU_RS18995	0.22	+0.3
4,297,701	+		PFLU_RS18995	0.30	-0.3
4,297,701	+		PFLU_RS18995	0.30	-0.0
4,297,713	+		PFLU_RS18995	0.31	-2.0
4,297,713	+		PFLU_RS18995	0.31	-0.5
4,297,714	-		PFLU_RS18995	0.31	-0.1
4,297,819	+		PFLU_RS18995	0.40	-0.7
4,297,819	+		PFLU_RS18995	0.40	-1.2
4,297,819	+		PFLU_RS18995	0.40	+0.2
4,297,819	+		PFLU_RS18995	0.40	-0.2
4,297,819	+		PFLU_RS18995	0.40	+0.0
4,297,819	+		PFLU_RS18995	0.40	-0.3
4,297,819	+		PFLU_RS18995	0.40	+1.1
4,297,820	-		PFLU_RS18995	0.40	-0.5
4,297,820	-		PFLU_RS18995	0.40	+0.4
4,297,820	-		PFLU_RS18995	0.40	+1.2
4,297,820	-		PFLU_RS18995	0.40	+1.0
4,297,820	-		PFLU_RS18995	0.40	+0.2
4,297,820	-		PFLU_RS18995	0.40	-0.9
4,297,904	+		PFLU_RS18995	0.48	+0.2
4,297,904	+		PFLU_RS18995	0.48	+0.8
4,297,905	-		PFLU_RS18995	0.48	-1.2
4,297,905	-		PFLU_RS18995	0.48	-0.1
4,297,980	+		PFLU_RS18995	0.54	-0.2
4,297,981	-		PFLU_RS18995	0.54	+0.0
4,298,054	+		PFLU_RS18995	0.61	-0.1
4,298,108	-		PFLU_RS18995	0.65	+0.3
4,298,108	-		PFLU_RS18995	0.65	+0.4
4,298,108	-		PFLU_RS18995	0.65	+0.7
4,298,127	+		PFLU_RS18995	0.67	-0.5
4,298,175	+		PFLU_RS18995	0.71	+0.9
4,298,175	+		PFLU_RS18995	0.71	+0.5
4,298,213	+		PFLU_RS18995	0.74	-0.0
4,298,213	+		PFLU_RS18995	0.74	+0.7
4,298,213	+		PFLU_RS18995	0.74	+0.3
4,298,213	+		PFLU_RS18995	0.74	+0.5
4,298,214	-		PFLU_RS18995	0.74	+0.2
4,298,214	-		PFLU_RS18995	0.74	+1.5