Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS24610

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS24605 and PFLU_RS24610 are separated by 69 nucleotidesPFLU_RS24610 and PFLU_RS24615 are separated by 258 nucleotidesPFLU_RS24615 and PFLU_RS24620 overlap by 4 nucleotides PFLU_RS24605: PFLU_RS24605 - formate-dependent phosphoribosylglycinamide formyltransferase, at 5,511,848 to 5,513,029 _RS24605 PFLU_RS24610: PFLU_RS24610 - preQ0 transporter, at 5,513,099 to 5,513,566 _RS24610 PFLU_RS24615: PFLU_RS24615 - DUF1289 domain-containing protein, at 5,513,825 to 5,514,040 _RS24615 PFLU_RS24620: PFLU_RS24620 - gamma carbonic anhydrase family protein, at 5,514,037 to 5,514,561 _RS24620 Position (kb) 5513 5514Strain fitness (log2 ratio) -2 -1 0 1 2at 5512.608 kb on + strand, within PFLU_RS24605at 5512.608 kb on + strand, within PFLU_RS24605at 5512.608 kb on + strand, within PFLU_RS24605at 5512.608 kb on + strand, within PFLU_RS24605at 5512.608 kb on + strand, within PFLU_RS24605at 5512.608 kb on + strand, within PFLU_RS24605at 5512.609 kb on - strand, within PFLU_RS24605at 5512.609 kb on - strand, within PFLU_RS24605at 5512.609 kb on - strand, within PFLU_RS24605at 5512.708 kb on + strand, within PFLU_RS24605at 5512.864 kb on + strand, within PFLU_RS24605at 5513.076 kb on + strandat 5513.076 kb on + strandat 5513.076 kb on + strandat 5513.076 kb on + strandat 5513.230 kb on + strand, within PFLU_RS24610at 5513.231 kb on - strand, within PFLU_RS24610at 5513.231 kb on - strand, within PFLU_RS24610at 5513.231 kb on - strand, within PFLU_RS24610at 5513.264 kb on + strand, within PFLU_RS24610at 5513.265 kb on - strand, within PFLU_RS24610at 5513.382 kb on + strand, within PFLU_RS24610at 5513.382 kb on + strand, within PFLU_RS24610at 5513.382 kb on + strand, within PFLU_RS24610at 5513.382 kb on + strand, within PFLU_RS24610at 5513.382 kb on + strand, within PFLU_RS24610at 5513.382 kb on + strand, within PFLU_RS24610at 5513.382 kb on + strand, within PFLU_RS24610at 5513.383 kb on - strand, within PFLU_RS24610at 5513.383 kb on - strand, within PFLU_RS24610at 5513.383 kb on - strand, within PFLU_RS24610at 5513.383 kb on - strand, within PFLU_RS24610at 5513.383 kb on - strand, within PFLU_RS24610at 5513.547 kb on + strandat 5513.547 kb on + strandat 5513.547 kb on + strandat 5513.548 kb on - strandat 5513.548 kb on - strandat 5513.548 kb on - strandat 5513.600 kb on + strandat 5513.600 kb on + strandat 5513.600 kb on + strandat 5513.601 kb on - strandat 5513.601 kb on - strandat 5513.601 kb on - strandat 5513.601 kb on - strandat 5513.619 kb on + strandat 5513.753 kb on - strandat 5513.819 kb on + strandat 5513.819 kb on + strandat 5513.851 kb on + strand, within PFLU_RS24615at 5513.851 kb on + strand, within PFLU_RS24615at 5513.851 kb on + strand, within PFLU_RS24615at 5513.953 kb on + strand, within PFLU_RS24615at 5513.953 kb on + strand, within PFLU_RS24615at 5513.953 kb on + strand, within PFLU_RS24615at 5513.953 kb on + strand, within PFLU_RS24615at 5513.954 kb on - strand, within PFLU_RS24615at 5513.972 kb on + strand, within PFLU_RS24615at 5513.972 kb on + strand, within PFLU_RS24615at 5513.972 kb on + strand, within PFLU_RS24615at 5513.972 kb on + strand, within PFLU_RS24615at 5513.972 kb on + strand, within PFLU_RS24615at 5513.972 kb on + strand, within PFLU_RS24615at 5513.972 kb on + strand, within PFLU_RS24615at 5513.972 kb on + strand, within PFLU_RS24615at 5513.972 kb on + strand, within PFLU_RS24615at 5513.972 kb on + strand, within PFLU_RS24615at 5513.972 kb on + strand, within PFLU_RS24615at 5513.972 kb on + strand, within PFLU_RS24615at 5513.972 kb on + strand, within PFLU_RS24615at 5513.972 kb on + strand, within PFLU_RS24615at 5513.972 kb on + strand, within PFLU_RS24615at 5513.972 kb on + strand, within PFLU_RS24615at 5513.972 kb on + strand, within PFLU_RS24615at 5513.972 kb on + strand, within PFLU_RS24615at 5513.972 kb on + strand, within PFLU_RS24615at 5513.972 kb on + strand, within PFLU_RS24615at 5513.972 kb on + strand, within PFLU_RS24615at 5513.972 kb on + strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5513.973 kb on - strand, within PFLU_RS24615at 5514.068 kb on + strandat 5514.089 kb on + strandat 5514.089 kb on + strandat 5514.089 kb on + strandat 5514.089 kb on + strandat 5514.090 kb on - strand, within PFLU_RS24620at 5514.090 kb on - strand, within PFLU_RS24620at 5514.267 kb on + strand, within PFLU_RS24620at 5514.267 kb on + strand, within PFLU_RS24620at 5514.268 kb on - strand, within PFLU_RS24620at 5514.268 kb on - strand, within PFLU_RS24620at 5514.285 kb on - strand, within PFLU_RS24620at 5514.285 kb on - strand, within PFLU_RS24620at 5514.285 kb on - strand, within PFLU_RS24620at 5514.319 kb on - strand, within PFLU_RS24620at 5514.396 kb on + strand, within PFLU_RS24620at 5514.396 kb on + strand, within PFLU_RS24620at 5514.397 kb on - strand, within PFLU_RS24620at 5514.397 kb on - strand, within PFLU_RS24620at 5514.554 kb on + strandat 5514.555 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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5,512,608 + PFLU_RS24605 0.64 -0.8
5,512,608 + PFLU_RS24605 0.64 +0.2
5,512,608 + PFLU_RS24605 0.64 -0.4
5,512,608 + PFLU_RS24605 0.64 +0.1
5,512,608 + PFLU_RS24605 0.64 -1.5
5,512,608 + PFLU_RS24605 0.64 -0.4
5,512,609 - PFLU_RS24605 0.64 +0.1
5,512,609 - PFLU_RS24605 0.64 -0.8
5,512,609 - PFLU_RS24605 0.64 -0.2
5,512,708 + PFLU_RS24605 0.73 +0.8
5,512,864 + PFLU_RS24605 0.86 +1.1
5,513,076 + -0.3
5,513,076 + +0.7
5,513,076 + -1.9
5,513,076 + -1.3
5,513,230 + PFLU_RS24610 0.28 +0.9
5,513,231 - PFLU_RS24610 0.28 -0.3
5,513,231 - PFLU_RS24610 0.28 +0.4
5,513,231 - PFLU_RS24610 0.28 -0.3
5,513,264 + PFLU_RS24610 0.35 +0.1
5,513,265 - PFLU_RS24610 0.35 -0.5
5,513,382 + PFLU_RS24610 0.60 +0.8
5,513,382 + PFLU_RS24610 0.60 +0.2
5,513,382 + PFLU_RS24610 0.60 -0.3
5,513,382 + PFLU_RS24610 0.60 +0.4
5,513,382 + PFLU_RS24610 0.60 +0.3
5,513,382 + PFLU_RS24610 0.60 -1.9
5,513,382 + PFLU_RS24610 0.60 -0.5
5,513,383 - PFLU_RS24610 0.61 -0.3
5,513,383 - PFLU_RS24610 0.61 -0.7
5,513,383 - PFLU_RS24610 0.61 -2.0
5,513,383 - PFLU_RS24610 0.61 +1.0
5,513,383 - PFLU_RS24610 0.61 -1.0
5,513,547 + +0.9
5,513,547 + +1.9
5,513,547 + +0.4
5,513,548 - -0.8
5,513,548 - -0.9
5,513,548 - -0.2
5,513,600 + -0.4
5,513,600 + -1.2
5,513,600 + -0.3
5,513,601 - +0.1
5,513,601 - +0.9
5,513,601 - +0.1
5,513,601 - -1.2
5,513,619 + +1.1
5,513,753 - -1.3
5,513,819 + +1.1
5,513,819 + -0.7
5,513,851 + PFLU_RS24615 0.12 +0.1
5,513,851 + PFLU_RS24615 0.12 -1.9
5,513,851 + PFLU_RS24615 0.12 -0.2
5,513,953 + PFLU_RS24615 0.59 -1.5
5,513,953 + PFLU_RS24615 0.59 +1.1
5,513,953 + PFLU_RS24615 0.59 +0.3
5,513,953 + PFLU_RS24615 0.59 +0.7
5,513,954 - PFLU_RS24615 0.60 -0.4
5,513,972 + PFLU_RS24615 0.68 -1.6
5,513,972 + PFLU_RS24615 0.68 +0.1
5,513,972 + PFLU_RS24615 0.68 +1.4
5,513,972 + PFLU_RS24615 0.68 +0.8
5,513,972 + PFLU_RS24615 0.68 +0.6
5,513,972 + PFLU_RS24615 0.68 +0.4
5,513,972 + PFLU_RS24615 0.68 -0.5
5,513,972 + PFLU_RS24615 0.68 -0.5
5,513,972 + PFLU_RS24615 0.68 +1.1
5,513,972 + PFLU_RS24615 0.68 +0.5
5,513,972 + PFLU_RS24615 0.68 +0.5
5,513,972 + PFLU_RS24615 0.68 +1.3
5,513,972 + PFLU_RS24615 0.68 -0.0
5,513,972 + PFLU_RS24615 0.68 +1.0
5,513,972 + PFLU_RS24615 0.68 +1.5
5,513,972 + PFLU_RS24615 0.68 +0.9
5,513,972 + PFLU_RS24615 0.68 +0.1
5,513,972 + PFLU_RS24615 0.68 +0.2
5,513,972 + PFLU_RS24615 0.68 -0.8
5,513,972 + PFLU_RS24615 0.68 -0.2
5,513,972 + PFLU_RS24615 0.68 +0.8
5,513,972 + PFLU_RS24615 0.68 -0.2
5,513,973 - PFLU_RS24615 0.69 -0.8
5,513,973 - PFLU_RS24615 0.69 -1.3
5,513,973 - PFLU_RS24615 0.69 +0.1
5,513,973 - PFLU_RS24615 0.69 +0.2
5,513,973 - PFLU_RS24615 0.69 +1.2
5,513,973 - PFLU_RS24615 0.69 +1.0
5,513,973 - PFLU_RS24615 0.69 -1.7
5,513,973 - PFLU_RS24615 0.69 -0.3
5,513,973 - PFLU_RS24615 0.69 -0.4
5,513,973 - PFLU_RS24615 0.69 -2.5
5,513,973 - PFLU_RS24615 0.69 +0.0
5,513,973 - PFLU_RS24615 0.69 -0.5
5,513,973 - PFLU_RS24615 0.69 +1.1
5,513,973 - PFLU_RS24615 0.69 +0.4
5,513,973 - PFLU_RS24615 0.69 +0.2
5,513,973 - PFLU_RS24615 0.69 -2.1
5,513,973 - PFLU_RS24615 0.69 -0.3
5,513,973 - PFLU_RS24615 0.69 +0.3
5,513,973 - PFLU_RS24615 0.69 +0.4
5,513,973 - PFLU_RS24615 0.69 +0.3
5,513,973 - PFLU_RS24615 0.69 -0.9
5,513,973 - PFLU_RS24615 0.69 -0.5
5,513,973 - PFLU_RS24615 0.69 -1.4
5,513,973 - PFLU_RS24615 0.69 -0.5
5,513,973 - PFLU_RS24615 0.69 +0.5
5,513,973 - PFLU_RS24615 0.69 -0.2
5,513,973 - PFLU_RS24615 0.69 +0.7
5,513,973 - PFLU_RS24615 0.69 -1.8
5,513,973 - PFLU_RS24615 0.69 +0.2
5,513,973 - PFLU_RS24615 0.69 -0.3
5,514,068 + +0.9
5,514,089 + +0.1
5,514,089 + -1.9
5,514,089 + -0.3
5,514,089 + +0.8
5,514,090 - PFLU_RS24620 0.10 +0.8
5,514,090 - PFLU_RS24620 0.10 +0.0
5,514,267 + PFLU_RS24620 0.44 +0.0
5,514,267 + PFLU_RS24620 0.44 -0.2
5,514,268 - PFLU_RS24620 0.44 +0.7
5,514,268 - PFLU_RS24620 0.44 +1.3
5,514,285 - PFLU_RS24620 0.47 -1.6
5,514,285 - PFLU_RS24620 0.47 +0.5
5,514,285 - PFLU_RS24620 0.47 +0.7
5,514,319 - PFLU_RS24620 0.54 +0.5
5,514,396 + PFLU_RS24620 0.68 +1.2
5,514,396 + PFLU_RS24620 0.68 +0.8
5,514,397 - PFLU_RS24620 0.69 +0.2
5,514,397 - PFLU_RS24620 0.69 +0.9
5,514,554 + -0.3
5,514,555 - +0.4

Or see this region's nucleotide sequence