Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS22235 and PFLU_RS22240 are separated by 335 nucleotides PFLU_RS22240 and PFLU_RS22245 are separated by 284 nucleotides
PFLU_RS22235: PFLU_RS22235 - ABC transporter ATP-binding protein, at 4,998,091 to 4,999,923
_RS22235
PFLU_RS22240: PFLU_RS22240 - N-acetyltransferase, at 5,000,259 to 5,001,383
_RS22240
PFLU_RS22245: PFLU_RS22245 - hypothetical protein, at 5,001,668 to 5,003,011
_RS22245
Position (kb) 5000
5001
5002 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4999.324 kb on + strand, within PFLU_RS22235 at 4999.325 kb on - strand, within PFLU_RS22235 at 4999.325 kb on - strand, within PFLU_RS22235 at 4999.325 kb on - strand, within PFLU_RS22235 at 4999.325 kb on - strand, within PFLU_RS22235 at 4999.747 kb on - strand at 4999.747 kb on - strand at 4999.873 kb on + strand at 4999.874 kb on - strand at 4999.874 kb on - strand at 4999.937 kb on + strand at 4999.992 kb on - strand at 4999.992 kb on - strand at 4999.992 kb on - strand at 4999.992 kb on - strand at 4999.992 kb on - strand at 4999.992 kb on - strand at 4999.992 kb on - strand at 4999.992 kb on - strand at 5000.010 kb on - strand at 5000.148 kb on + strand at 5000.148 kb on + strand at 5000.148 kb on + strand at 5000.148 kb on + strand at 5000.149 kb on - strand at 5000.213 kb on + strand at 5000.213 kb on + strand at 5000.213 kb on + strand at 5000.213 kb on + strand at 5000.213 kb on + strand at 5000.213 kb on + strand at 5000.213 kb on + strand at 5000.213 kb on + strand at 5000.213 kb on + strand at 5000.213 kb on + strand at 5000.213 kb on + strand at 5000.213 kb on + strand at 5000.213 kb on + strand at 5000.213 kb on + strand at 5000.213 kb on + strand at 5000.213 kb on + strand at 5000.213 kb on + strand at 5000.213 kb on + strand at 5000.213 kb on + strand at 5000.213 kb on + strand at 5000.214 kb on - strand at 5000.214 kb on - strand at 5000.214 kb on - strand at 5000.214 kb on - strand at 5000.214 kb on - strand at 5000.214 kb on - strand at 5000.214 kb on - strand at 5000.214 kb on - strand at 5000.214 kb on - strand at 5000.214 kb on - strand at 5000.214 kb on - strand at 5000.214 kb on - strand at 5000.214 kb on - strand at 5000.214 kb on - strand at 5000.214 kb on - strand at 5000.214 kb on - strand at 5000.214 kb on - strand at 5000.214 kb on - strand at 5000.214 kb on - strand at 5000.246 kb on + strand at 5000.246 kb on + strand at 5000.246 kb on + strand at 5000.247 kb on - strand at 5000.247 kb on - strand at 5000.247 kb on - strand at 5000.248 kb on + strand at 5000.248 kb on + strand at 5000.248 kb on + strand at 5000.248 kb on + strand at 5000.248 kb on + strand at 5000.248 kb on + strand at 5000.248 kb on + strand at 5000.248 kb on + strand at 5000.248 kb on + strand at 5000.248 kb on + strand at 5000.248 kb on + strand at 5000.248 kb on + strand at 5000.248 kb on + strand at 5000.248 kb on + strand at 5000.248 kb on + strand at 5000.248 kb on + strand at 5000.248 kb on + strand at 5000.248 kb on + strand at 5000.248 kb on + strand at 5000.248 kb on + strand at 5000.249 kb on - strand at 5000.249 kb on - strand at 5000.249 kb on - strand at 5000.249 kb on - strand at 5000.249 kb on - strand at 5000.249 kb on - strand at 5000.249 kb on - strand at 5000.249 kb on - strand at 5000.249 kb on - strand at 5000.249 kb on - strand at 5000.249 kb on - strand at 5000.260 kb on + strand at 5000.260 kb on + strand at 5000.260 kb on + strand at 5000.261 kb on - strand at 5000.302 kb on + strand at 5000.302 kb on + strand at 5000.302 kb on + strand at 5000.374 kb on + strand, within PFLU_RS22240 at 5000.374 kb on + strand, within PFLU_RS22240 at 5000.473 kb on + strand, within PFLU_RS22240 at 5000.473 kb on + strand, within PFLU_RS22240 at 5000.474 kb on - strand, within PFLU_RS22240 at 5000.474 kb on - strand, within PFLU_RS22240 at 5000.488 kb on + strand, within PFLU_RS22240 at 5000.488 kb on + strand, within PFLU_RS22240 at 5000.548 kb on + strand, within PFLU_RS22240 at 5000.548 kb on + strand, within PFLU_RS22240 at 5000.548 kb on + strand, within PFLU_RS22240 at 5000.548 kb on + strand, within PFLU_RS22240 at 5000.549 kb on - strand, within PFLU_RS22240 at 5000.549 kb on - strand, within PFLU_RS22240 at 5000.549 kb on - strand, within PFLU_RS22240 at 5000.549 kb on - strand, within PFLU_RS22240 at 5000.549 kb on - strand, within PFLU_RS22240 at 5000.549 kb on - strand, within PFLU_RS22240 at 5000.674 kb on + strand, within PFLU_RS22240 at 5000.674 kb on + strand, within PFLU_RS22240 at 5000.699 kb on - strand, within PFLU_RS22240 at 5000.720 kb on - strand, within PFLU_RS22240 at 5000.720 kb on - strand, within PFLU_RS22240 at 5000.720 kb on - strand, within PFLU_RS22240 at 5001.103 kb on + strand, within PFLU_RS22240 at 5001.103 kb on + strand, within PFLU_RS22240 at 5001.103 kb on + strand, within PFLU_RS22240 at 5001.104 kb on - strand, within PFLU_RS22240 at 5001.104 kb on - strand, within PFLU_RS22240 at 5001.154 kb on + strand, within PFLU_RS22240 at 5001.154 kb on + strand, within PFLU_RS22240 at 5001.154 kb on + strand, within PFLU_RS22240 at 5001.155 kb on - strand, within PFLU_RS22240 at 5001.155 kb on - strand, within PFLU_RS22240 at 5001.155 kb on - strand, within PFLU_RS22240 at 5001.155 kb on - strand, within PFLU_RS22240 at 5001.155 kb on - strand, within PFLU_RS22240 at 5001.164 kb on - strand, within PFLU_RS22240 at 5001.396 kb on + strand at 5001.396 kb on + strand at 5001.397 kb on - strand at 5001.481 kb on + strand at 5001.595 kb on + strand at 5001.595 kb on + strand at 5001.595 kb on + strand at 5001.595 kb on + strand at 5001.595 kb on + strand at 5001.595 kb on + strand at 5001.596 kb on - strand at 5001.596 kb on - strand at 5001.596 kb on - strand at 5001.596 kb on - strand at 5001.667 kb on + strand at 5001.667 kb on + strand at 5001.668 kb on - strand at 5001.668 kb on - strand at 5001.685 kb on + strand at 5001.718 kb on - strand at 5001.718 kb on - strand at 5001.757 kb on + strand at 5001.806 kb on + strand, within PFLU_RS22245 at 5001.806 kb on + strand, within PFLU_RS22245 at 5001.806 kb on + strand, within PFLU_RS22245 at 5001.806 kb on + strand, within PFLU_RS22245 at 5001.807 kb on - strand, within PFLU_RS22245 at 5001.807 kb on - strand, within PFLU_RS22245 at 5001.807 kb on - strand, within PFLU_RS22245 at 5001.807 kb on - strand, within PFLU_RS22245 at 5002.088 kb on + strand, within PFLU_RS22245 at 5002.089 kb on - strand, within PFLU_RS22245 at 5002.120 kb on + strand, within PFLU_RS22245 at 5002.120 kb on + strand, within PFLU_RS22245 at 5002.181 kb on + strand, within PFLU_RS22245 at 5002.181 kb on + strand, within PFLU_RS22245 at 5002.181 kb on + strand, within PFLU_RS22245 at 5002.182 kb on - strand, within PFLU_RS22245 at 5002.190 kb on - strand, within PFLU_RS22245 at 5002.217 kb on + strand, within PFLU_RS22245 at 5002.217 kb on + strand, within PFLU_RS22245 at 5002.218 kb on - strand, within PFLU_RS22245 at 5002.218 kb on - strand, within PFLU_RS22245 at 5002.218 kb on - strand, within PFLU_RS22245 at 5002.218 kb on - strand, within PFLU_RS22245 at 5002.226 kb on + strand, within PFLU_RS22245 at 5002.227 kb on - strand, within PFLU_RS22245 at 5002.227 kb on - strand, within PFLU_RS22245 at 5002.227 kb on - strand, within PFLU_RS22245 at 5002.346 kb on + strand, within PFLU_RS22245 at 5002.346 kb on + strand, within PFLU_RS22245 at 5002.346 kb on + strand, within PFLU_RS22245 at 5002.346 kb on + strand, within PFLU_RS22245 at 5002.346 kb on + strand, within PFLU_RS22245 at 5002.346 kb on + strand, within PFLU_RS22245 at 5002.346 kb on + strand, within PFLU_RS22245 at 5002.346 kb on + strand, within PFLU_RS22245 at 5002.346 kb on + strand, within PFLU_RS22245 at 5002.346 kb on + strand, within PFLU_RS22245 at 5002.346 kb on + strand, within PFLU_RS22245 at 5002.346 kb on + strand, within PFLU_RS22245 at 5002.346 kb on + strand, within PFLU_RS22245 at 5002.346 kb on + strand, within PFLU_RS22245 at 5002.346 kb on + strand, within PFLU_RS22245 at 5002.347 kb on - strand, within PFLU_RS22245 at 5002.347 kb on - strand, within PFLU_RS22245 at 5002.347 kb on - strand, within PFLU_RS22245 at 5002.347 kb on - strand, within PFLU_RS22245 at 5002.347 kb on - strand, within PFLU_RS22245 at 5002.347 kb on - strand, within PFLU_RS22245 at 5002.347 kb on - strand, within PFLU_RS22245 at 5002.347 kb on - strand, within PFLU_RS22245 at 5002.347 kb on - strand, within PFLU_RS22245 at 5002.347 kb on - strand, within PFLU_RS22245
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 4,999,324 + PFLU_RS22235 0.67 -0.3 4,999,325 - PFLU_RS22235 0.67 -1.5 4,999,325 - PFLU_RS22235 0.67 -1.2 4,999,325 - PFLU_RS22235 0.67 +0.6 4,999,325 - PFLU_RS22235 0.67 +0.2 4,999,747 - -0.4 4,999,747 - +0.3 4,999,873 + -0.1 4,999,874 - +0.6 4,999,874 - +1.3 4,999,937 + -0.1 4,999,992 - -0.0 4,999,992 - -1.4 4,999,992 - -0.5 4,999,992 - -0.4 4,999,992 - +0.8 4,999,992 - +0.3 4,999,992 - -0.3 4,999,992 - +0.0 5,000,010 - +0.0 5,000,148 + +0.6 5,000,148 + -0.1 5,000,148 + -1.0 5,000,148 + -0.3 5,000,149 - +0.4 5,000,213 + +0.5 5,000,213 + +1.0 5,000,213 + -0.5 5,000,213 + -0.5 5,000,213 + -0.1 5,000,213 + -0.0 5,000,213 + +0.0 5,000,213 + -0.4 5,000,213 + +0.9 5,000,213 + -0.6 5,000,213 + -1.1 5,000,213 + -0.6 5,000,213 + -1.3 5,000,213 + +1.4 5,000,213 + -0.9 5,000,213 + +0.9 5,000,213 + +0.3 5,000,213 + +1.0 5,000,213 + +1.8 5,000,213 + +1.2 5,000,214 - -1.8 5,000,214 - -0.4 5,000,214 - +1.2 5,000,214 - +0.8 5,000,214 - +1.1 5,000,214 - -0.0 5,000,214 - +0.1 5,000,214 - -0.2 5,000,214 - +0.9 5,000,214 - +0.8 5,000,214 - -0.6 5,000,214 - +0.2 5,000,214 - +0.9 5,000,214 - -1.2 5,000,214 - -0.1 5,000,214 - +0.2 5,000,214 - +0.0 5,000,214 - +0.2 5,000,214 - -1.0 5,000,246 + +0.0 5,000,246 + +0.4 5,000,246 + +1.0 5,000,247 - +1.6 5,000,247 - +0.2 5,000,247 - -0.0 5,000,248 + +0.5 5,000,248 + +1.3 5,000,248 + +1.0 5,000,248 + -0.7 5,000,248 + -0.0 5,000,248 + -0.5 5,000,248 + +0.2 5,000,248 + -1.4 5,000,248 + +0.6 5,000,248 + +0.3 5,000,248 + -0.4 5,000,248 + +0.7 5,000,248 + +0.5 5,000,248 + -0.6 5,000,248 + +0.5 5,000,248 + +1.4 5,000,248 + -0.5 5,000,248 + -0.2 5,000,248 + -0.0 5,000,248 + -0.3 5,000,249 - -0.7 5,000,249 - +0.0 5,000,249 - +0.2 5,000,249 - -2.2 5,000,249 - +1.7 5,000,249 - +0.5 5,000,249 - +0.4 5,000,249 - -2.1 5,000,249 - -1.1 5,000,249 - +0.9 5,000,249 - +0.1 5,000,260 + +0.5 5,000,260 + +0.7 5,000,260 + +0.4 5,000,261 - -1.0 5,000,302 + +0.3 5,000,302 + +0.9 5,000,302 + -0.4 5,000,374 + PFLU_RS22240 0.10 +0.3 5,000,374 + PFLU_RS22240 0.10 -2.3 5,000,473 + PFLU_RS22240 0.19 -0.9 5,000,473 + PFLU_RS22240 0.19 +0.7 5,000,474 - PFLU_RS22240 0.19 +0.2 5,000,474 - PFLU_RS22240 0.19 +0.2 5,000,488 + PFLU_RS22240 0.20 -0.3 5,000,488 + PFLU_RS22240 0.20 +0.7 5,000,548 + PFLU_RS22240 0.26 +0.4 5,000,548 + PFLU_RS22240 0.26 +0.1 5,000,548 + PFLU_RS22240 0.26 +0.0 5,000,548 + PFLU_RS22240 0.26 -0.3 5,000,549 - PFLU_RS22240 0.26 +0.1 5,000,549 - PFLU_RS22240 0.26 -0.5 5,000,549 - PFLU_RS22240 0.26 +0.9 5,000,549 - PFLU_RS22240 0.26 -0.2 5,000,549 - PFLU_RS22240 0.26 +2.5 5,000,549 - PFLU_RS22240 0.26 -0.2 5,000,674 + PFLU_RS22240 0.37 +0.4 5,000,674 + PFLU_RS22240 0.37 -1.5 5,000,699 - PFLU_RS22240 0.39 -0.1 5,000,720 - PFLU_RS22240 0.41 +0.0 5,000,720 - PFLU_RS22240 0.41 -1.1 5,000,720 - PFLU_RS22240 0.41 -0.6 5,001,103 + PFLU_RS22240 0.75 +0.9 5,001,103 + PFLU_RS22240 0.75 +0.3 5,001,103 + PFLU_RS22240 0.75 +0.9 5,001,104 - PFLU_RS22240 0.75 +0.3 5,001,104 - PFLU_RS22240 0.75 +0.5 5,001,154 + PFLU_RS22240 0.80 -0.5 5,001,154 + PFLU_RS22240 0.80 +0.7 5,001,154 + PFLU_RS22240 0.80 -0.3 5,001,155 - PFLU_RS22240 0.80 -0.1 5,001,155 - PFLU_RS22240 0.80 +1.4 5,001,155 - PFLU_RS22240 0.80 +0.6 5,001,155 - PFLU_RS22240 0.80 +0.7 5,001,155 - PFLU_RS22240 0.80 +0.0 5,001,164 - PFLU_RS22240 0.80 -0.3 5,001,396 + -0.7 5,001,396 + +0.4 5,001,397 - -1.0 5,001,481 + -0.4 5,001,595 + +0.9 5,001,595 + +0.1 5,001,595 + -0.8 5,001,595 + -0.7 5,001,595 + -0.0 5,001,595 + +0.4 5,001,596 - -0.8 5,001,596 - -2.4 5,001,596 - +0.8 5,001,596 - +0.3 5,001,667 + +0.5 5,001,667 + -0.8 5,001,668 - -2.0 5,001,668 - -0.9 5,001,685 + +0.8 5,001,718 - -0.3 5,001,718 - -1.0 5,001,757 + +0.6 5,001,806 + PFLU_RS22245 0.10 -0.4 5,001,806 + PFLU_RS22245 0.10 -0.4 5,001,806 + PFLU_RS22245 0.10 -0.1 5,001,806 + PFLU_RS22245 0.10 -0.6 5,001,807 - PFLU_RS22245 0.10 +2.0 5,001,807 - PFLU_RS22245 0.10 +0.5 5,001,807 - PFLU_RS22245 0.10 -1.0 5,001,807 - PFLU_RS22245 0.10 -1.0 5,002,088 + PFLU_RS22245 0.31 -0.5 5,002,089 - PFLU_RS22245 0.31 +0.5 5,002,120 + PFLU_RS22245 0.34 +0.1 5,002,120 + PFLU_RS22245 0.34 +0.3 5,002,181 + PFLU_RS22245 0.38 -0.7 5,002,181 + PFLU_RS22245 0.38 -3.7 5,002,181 + PFLU_RS22245 0.38 +0.4 5,002,182 - PFLU_RS22245 0.38 +0.3 5,002,190 - PFLU_RS22245 0.39 -0.5 5,002,217 + PFLU_RS22245 0.41 -0.3 5,002,217 + PFLU_RS22245 0.41 +0.8 5,002,218 - PFLU_RS22245 0.41 +0.6 5,002,218 - PFLU_RS22245 0.41 +0.3 5,002,218 - PFLU_RS22245 0.41 -0.2 5,002,218 - PFLU_RS22245 0.41 +0.9 5,002,226 + PFLU_RS22245 0.42 +0.8 5,002,227 - PFLU_RS22245 0.42 +0.3 5,002,227 - PFLU_RS22245 0.42 -0.5 5,002,227 - PFLU_RS22245 0.42 +0.6 5,002,346 + PFLU_RS22245 0.50 -1.3 5,002,346 + PFLU_RS22245 0.50 -1.0 5,002,346 + PFLU_RS22245 0.50 +0.4 5,002,346 + PFLU_RS22245 0.50 -0.4 5,002,346 + PFLU_RS22245 0.50 +0.3 5,002,346 + PFLU_RS22245 0.50 -0.3 5,002,346 + PFLU_RS22245 0.50 -0.1 5,002,346 + PFLU_RS22245 0.50 +0.3 5,002,346 + PFLU_RS22245 0.50 +0.2 5,002,346 + PFLU_RS22245 0.50 +0.1 5,002,346 + PFLU_RS22245 0.50 -1.9 5,002,346 + PFLU_RS22245 0.50 -0.4 5,002,346 + PFLU_RS22245 0.50 -0.0 5,002,346 + PFLU_RS22245 0.50 -1.8 5,002,346 + PFLU_RS22245 0.50 +1.8 5,002,347 - PFLU_RS22245 0.51 +0.4 5,002,347 - PFLU_RS22245 0.51 -1.6 5,002,347 - PFLU_RS22245 0.51 -0.9 5,002,347 - PFLU_RS22245 0.51 +0.1 5,002,347 - PFLU_RS22245 0.51 +0.6 5,002,347 - PFLU_RS22245 0.51 -1.8 5,002,347 - PFLU_RS22245 0.51 -0.2 5,002,347 - PFLU_RS22245 0.51 -1.9 5,002,347 - PFLU_RS22245 0.51 -1.0 5,002,347 - PFLU_RS22245 0.51 +1.5
Or see this region's nucleotide sequence