Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS22235

Experiment: D-Xylose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose (C)
4,997,178	+		PFLU_RS22225	0.67	-0.9
4,997,178	+		PFLU_RS22225	0.67	+0.8
4,997,179	-		PFLU_RS22225	0.67	-0.2
4,997,179	-		PFLU_RS22225	0.67	-0.1
4,997,179	-		PFLU_RS22225	0.67	-2.3
4,997,179	-		PFLU_RS22225	0.67	-1.7
4,997,274	+		PFLU_RS22225	0.79	-1.3
4,997,274	+		PFLU_RS22225	0.79	+0.5
4,997,275	-		PFLU_RS22225	0.79	+0.1
4,997,275	-		PFLU_RS22225	0.79	-1.3
4,997,301	+		PFLU_RS22225	0.82	+0.4
4,997,301	+		PFLU_RS22225	0.82	+0.7
4,997,302	-		PFLU_RS22225	0.83	+1.4
4,997,302	-		PFLU_RS22225	0.83	-0.2
4,997,302	-		PFLU_RS22225	0.83	-0.4
4,997,302	-		PFLU_RS22225	0.83	-1.7
4,997,302	-		PFLU_RS22225	0.83	+0.8
4,997,305	+		PFLU_RS22225	0.83	-1.1
4,997,305	+		PFLU_RS22225	0.83	-1.4
4,997,305	+		PFLU_RS22225	0.83	-0.5
4,997,305	+		PFLU_RS22225	0.83	-1.0
4,997,305	+		PFLU_RS22225	0.83	-1.2
4,997,305	+		PFLU_RS22225	0.83	-0.2
4,997,306	-		PFLU_RS22225	0.83	+1.3
4,997,306	-		PFLU_RS22225	0.83	-0.7
4,997,306	-		PFLU_RS22225	0.83	+1.1
4,997,306	-		PFLU_RS22225	0.83	-0.0
4,997,306	-		PFLU_RS22225	0.83	+0.1
4,997,306	-		PFLU_RS22225	0.83	+0.5
4,997,306	-		PFLU_RS22225	0.83	-0.2
4,997,407	+				+0.1
4,997,408	-				-0.7
4,997,530	+		PFLU_RS22230	0.15	-0.5
4,997,530	+		PFLU_RS22230	0.15	+0.3
4,997,530	+		PFLU_RS22230	0.15	+0.9
4,997,530	+		PFLU_RS22230	0.15	-0.8
4,997,530	+		PFLU_RS22230	0.15	-0.4
4,997,530	+		PFLU_RS22230	0.15	-1.2
4,997,530	+		PFLU_RS22230	0.15	-0.2
4,997,530	+		PFLU_RS22230	0.15	-0.3
4,997,531	-		PFLU_RS22230	0.15	-0.1
4,997,531	-		PFLU_RS22230	0.15	+0.8
4,997,531	-		PFLU_RS22230	0.15	-0.0
4,997,531	-		PFLU_RS22230	0.15	-0.2
4,997,531	-		PFLU_RS22230	0.15	-0.6
4,997,531	-		PFLU_RS22230	0.15	+0.4
4,997,531	-		PFLU_RS22230	0.15	+0.9
4,997,613	+		PFLU_RS22230	0.30	+0.7
4,997,613	+		PFLU_RS22230	0.30	+0.4
4,997,613	+		PFLU_RS22230	0.30	-1.5
4,997,613	+		PFLU_RS22230	0.30	-0.6
4,997,614	-		PFLU_RS22230	0.30	+1.0
4,997,614	-		PFLU_RS22230	0.30	-2.0
4,997,614	-		PFLU_RS22230	0.30	+1.3
4,997,614	-		PFLU_RS22230	0.30	-0.4
4,997,614	-		PFLU_RS22230	0.30	-0.4
4,997,614	-		PFLU_RS22230	0.30	-0.3
4,997,614	-		PFLU_RS22230	0.30	-0.5
4,997,631	+		PFLU_RS22230	0.33	+0.5
4,997,632	-		PFLU_RS22230	0.33	-0.5
4,997,632	-		PFLU_RS22230	0.33	+0.2
4,997,756	+		PFLU_RS22230	0.55	+1.0
4,997,756	+		PFLU_RS22230	0.55	+0.3
4,997,761	+		PFLU_RS22230	0.56	-0.5
4,997,761	+		PFLU_RS22230	0.56	+0.8
4,997,761	+		PFLU_RS22230	0.56	+0.9
4,997,761	+		PFLU_RS22230	0.56	-1.0
4,997,761	+		PFLU_RS22230	0.56	-0.3
4,997,761	+		PFLU_RS22230	0.56	+0.5
4,997,761	+		PFLU_RS22230	0.56	+0.1
4,997,761	+		PFLU_RS22230	0.56	-1.4
4,997,761	+		PFLU_RS22230	0.56	-1.2
4,997,761	+		PFLU_RS22230	0.56	+0.1
4,997,761	+		PFLU_RS22230	0.56	-0.1
4,997,761	+		PFLU_RS22230	0.56	-0.0
4,997,761	+		PFLU_RS22230	0.56	+1.0
4,997,762	-		PFLU_RS22230	0.56	+0.9
4,997,762	-		PFLU_RS22230	0.56	+0.6
4,997,762	-		PFLU_RS22230	0.56	+0.4
4,997,762	-		PFLU_RS22230	0.56	+0.1
4,997,762	-		PFLU_RS22230	0.56	-0.1
4,997,762	-		PFLU_RS22230	0.56	+0.4
4,997,762	-		PFLU_RS22230	0.56	+0.0
4,997,878	+		PFLU_RS22230	0.77	+0.1
4,997,879	-		PFLU_RS22230	0.77	+0.4
4,997,979	+				-0.0
4,997,979	+				-0.7
4,997,979	+				+0.4
4,997,979	+				+0.6
4,997,979	+				-0.3
4,997,979	+				-0.9
4,997,979	+				-1.3
4,997,979	+				-0.7
4,997,979	+				+0.6
4,997,980	-				+0.9
4,997,980	-				+0.5
4,997,980	-				+1.0
4,997,980	-				+0.6
4,997,980	-				-0.5
4,997,980	-				+1.0
4,997,980	-				+1.9
4,997,980	-				+0.2
4,997,980	-				-0.2
4,998,011	+				+0.3
4,998,011	+				-1.3
4,998,012	-				+0.2
4,998,018	+				+0.2
4,998,018	+				-0.1
4,998,019	-				+0.2
4,998,019	-				+0.3
4,998,019	-				+0.7
4,998,019	-				+0.1
4,998,089	+				+0.6
4,998,097	+				+0.0
4,998,097	+				-2.0
4,998,097	+				-2.5
4,998,098	-				+0.0
4,998,098	-				+0.9
4,998,175	+				-1.8
4,998,175	+				+0.2
4,998,175	+				-2.2
4,998,175	+				-1.0
4,998,176	-				-0.3
4,998,176	-				-0.7
4,998,176	-				+0.4
4,998,176	-				+0.5
4,998,176	-				+0.2
4,998,176	-				+0.1
4,998,184	+				-1.1
4,998,184	+				+0.3
4,998,184	+				+0.3
4,998,185	-				-1.1
4,998,268	+				-1.8
4,998,268	+				+0.7
4,998,269	-				+0.6
4,998,269	-				-0.2
4,998,463	+		PFLU_RS22235	0.20	-1.2
4,998,463	+		PFLU_RS22235	0.20	+2.2
4,998,463	+		PFLU_RS22235	0.20	+0.5
4,998,463	+		PFLU_RS22235	0.20	-0.1
4,998,463	+		PFLU_RS22235	0.20	+0.2
4,998,464	-		PFLU_RS22235	0.20	-0.8
4,998,464	-		PFLU_RS22235	0.20	+0.3
4,998,464	-		PFLU_RS22235	0.20	+0.3
4,998,464	-		PFLU_RS22235	0.20	+0.1
4,998,464	-		PFLU_RS22235	0.20	+0.4
4,998,464	-		PFLU_RS22235	0.20	-0.1
4,998,464	-		PFLU_RS22235	0.20	+0.0
4,998,464	-		PFLU_RS22235	0.20	-1.5
4,998,514	-		PFLU_RS22235	0.23	+1.0
4,998,514	-		PFLU_RS22235	0.23	+0.6
4,998,598	+		PFLU_RS22235	0.28	-0.7
4,998,676	+		PFLU_RS22235	0.32	+0.6
4,998,677	-		PFLU_RS22235	0.32	+0.3
4,998,694	+		PFLU_RS22235	0.33	-0.4
4,998,695	-		PFLU_RS22235	0.33	-0.3
4,998,695	-		PFLU_RS22235	0.33	-1.3
4,998,695	-		PFLU_RS22235	0.33	+0.5
4,998,763	-		PFLU_RS22235	0.37	+0.9
4,998,775	+		PFLU_RS22235	0.37	+0.8
4,998,810	+		PFLU_RS22235	0.39	-0.7
4,998,829	+		PFLU_RS22235	0.40	-1.2
4,998,829	+		PFLU_RS22235	0.40	-0.2
4,998,830	-		PFLU_RS22235	0.40	-1.1
4,998,830	-		PFLU_RS22235	0.40	-0.9
4,998,830	-		PFLU_RS22235	0.40	-0.2
4,999,324	+		PFLU_RS22235	0.67	-0.3
4,999,325	-		PFLU_RS22235	0.67	-1.5
4,999,325	-		PFLU_RS22235	0.67	-1.2
4,999,325	-		PFLU_RS22235	0.67	+0.6
4,999,325	-		PFLU_RS22235	0.67	+0.2
4,999,747	-				-0.4
4,999,747	-				+0.3
4,999,873	+				-0.1
4,999,874	-				+0.6
4,999,874	-				+1.3
4,999,937	+				-0.1
4,999,992	-				-0.0
4,999,992	-				-1.4
4,999,992	-				-0.5
4,999,992	-				-0.4
4,999,992	-				+0.8
4,999,992	-				+0.3
4,999,992	-				-0.3
4,999,992	-				+0.0
5,000,010	-				+0.0
5,000,148	+				+0.6
5,000,148	+				-0.1
5,000,148	+				-1.0
5,000,148	+				-0.3
5,000,149	-				+0.4
5,000,213	+				+0.5
5,000,213	+				+1.0
5,000,213	+				-0.5
5,000,213	+				-0.5
5,000,213	+				-0.1
5,000,213	+				-0.0
5,000,213	+				+0.0
5,000,213	+				-0.4
5,000,213	+				+0.9
5,000,213	+				-0.6
5,000,213	+				-1.1
5,000,213	+				-0.6
5,000,213	+				-1.3
5,000,213	+				+1.4
5,000,213	+				-0.9
5,000,213	+				+0.9
5,000,213	+				+0.3
5,000,213	+				+1.0
5,000,213	+				+1.8
5,000,213	+				+1.2
5,000,214	-				-1.8
5,000,214	-				-0.4
5,000,214	-				+1.2
5,000,214	-				+0.8
5,000,214	-				+1.1
5,000,214	-				-0.0
5,000,214	-				+0.1
5,000,214	-				-0.2
5,000,214	-				+0.9
5,000,214	-				+0.8
5,000,214	-				-0.6
5,000,214	-				+0.2
5,000,214	-				+0.9
5,000,214	-				-1.2
5,000,214	-				-0.1
5,000,214	-				+0.2
5,000,214	-				+0.0
5,000,214	-				+0.2
5,000,214	-				-1.0
5,000,246	+				+0.0
5,000,246	+				+0.4
5,000,246	+				+1.0
5,000,247	-				+1.6
5,000,247	-				+0.2
5,000,247	-				-0.0
5,000,248	+				+0.5
5,000,248	+				+1.3
5,000,248	+				+1.0
5,000,248	+				-0.7
5,000,248	+				-0.0
5,000,248	+				-0.5
5,000,248	+				+0.2
5,000,248	+				-1.4
5,000,248	+				+0.6
5,000,248	+				+0.3
5,000,248	+				-0.4
5,000,248	+				+0.7
5,000,248	+				+0.5
5,000,248	+				-0.6
5,000,248	+				+0.5
5,000,248	+				+1.4
5,000,248	+				-0.5
5,000,248	+				-0.2
5,000,248	+				-0.0
5,000,248	+				-0.3
5,000,249	-				-0.7
5,000,249	-				+0.0
5,000,249	-				+0.2
5,000,249	-				-2.2
5,000,249	-				+1.7
5,000,249	-				+0.5
5,000,249	-				+0.4
5,000,249	-				-2.1
5,000,249	-				-1.1
5,000,249	-				+0.9
5,000,249	-				+0.1
5,000,260	+				+0.5
5,000,260	+				+0.7
5,000,260	+				+0.4
5,000,261	-				-1.0
5,000,302	+				+0.3
5,000,302	+				+0.9
5,000,302	+				-0.4
5,000,374	+		PFLU_RS22240	0.10	+0.3
5,000,374	+		PFLU_RS22240	0.10	-2.3
5,000,473	+		PFLU_RS22240	0.19	-0.9
5,000,473	+		PFLU_RS22240	0.19	+0.7
5,000,474	-		PFLU_RS22240	0.19	+0.2
5,000,474	-		PFLU_RS22240	0.19	+0.2
5,000,488	+		PFLU_RS22240	0.20	-0.3
5,000,488	+		PFLU_RS22240	0.20	+0.7
5,000,548	+		PFLU_RS22240	0.26	+0.4
5,000,548	+		PFLU_RS22240	0.26	+0.1
5,000,548	+		PFLU_RS22240	0.26	+0.0
5,000,548	+		PFLU_RS22240	0.26	-0.3
5,000,549	-		PFLU_RS22240	0.26	+0.1
5,000,549	-		PFLU_RS22240	0.26	-0.5
5,000,549	-		PFLU_RS22240	0.26	+0.9
5,000,549	-		PFLU_RS22240	0.26	-0.2
5,000,549	-		PFLU_RS22240	0.26	+2.5
5,000,549	-		PFLU_RS22240	0.26	-0.2
5,000,674	+		PFLU_RS22240	0.37	+0.4
5,000,674	+		PFLU_RS22240	0.37	-1.5
5,000,699	-		PFLU_RS22240	0.39	-0.1
5,000,720	-		PFLU_RS22240	0.41	+0.0
5,000,720	-		PFLU_RS22240	0.41	-1.1
5,000,720	-		PFLU_RS22240	0.41	-0.6