Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS15320

Experiment: D-Xylose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose (C)
3,432,261	-		PFLU_RS15315	0.40	-0.8
3,432,412	+		PFLU_RS15315	0.50	+0.2
3,432,413	-		PFLU_RS15315	0.51	+0.1
3,432,427	+		PFLU_RS15315	0.52	-0.7
3,432,427	+		PFLU_RS15315	0.52	+0.1
3,432,427	+		PFLU_RS15315	0.52	+0.4
3,432,428	-		PFLU_RS15315	0.52	-0.0
3,432,491	+		PFLU_RS15315	0.56	+0.0
3,432,541	+		PFLU_RS15315	0.60	+0.3
3,432,587	-		PFLU_RS15315	0.63	+0.6
3,432,587	-		PFLU_RS15315	0.63	+1.2
3,432,587	-		PFLU_RS15315	0.63	-1.6
3,432,730	+		PFLU_RS15315	0.73	+0.5
3,432,731	-		PFLU_RS15315	0.73	+0.7
3,432,731	-		PFLU_RS15315	0.73	-1.6
3,432,731	-		PFLU_RS15315	0.73	+0.6
3,432,763	+		PFLU_RS15315	0.75	-0.3
3,432,901	-		PFLU_RS15315	0.85	+0.1
3,433,024	+				-2.1
3,433,024	+				+0.2
3,433,024	+				+1.6
3,433,024	+				-0.4
3,433,024	+				+0.8
3,433,025	-				-0.9
3,433,025	-				+0.0
3,433,025	-				-0.4
3,433,030	+				+0.3
3,433,030	+				+0.6
3,433,030	+				-3.3
3,433,030	+				-1.2
3,433,030	+				+0.0
3,433,030	+				+1.7
3,433,030	+				+1.1
3,433,030	+				+0.2
3,433,031	-				+1.0
3,433,031	-				+0.1
3,433,031	-				+0.6
3,433,031	-				+1.1
3,433,092	-				+1.1
3,433,092	-				+0.4
3,433,101	+				-1.7
3,433,101	+				-1.0
3,433,101	+				+1.2
3,433,102	-				-0.7
3,433,102	-				-0.2
3,433,102	-				-0.1
3,433,102	-				+1.2
3,433,102	-				+0.2
3,433,102	-				-0.6
3,433,103	+				+0.3
3,433,103	+				+1.9
3,433,103	+				+0.9
3,433,104	-				-0.4
3,433,123	+				+0.8
3,433,123	+				-0.8
3,433,123	+				-1.6
3,433,123	+				-0.3
3,433,124	-				+0.1
3,433,124	-				+0.5
3,433,124	-				-0.0
3,433,124	-				-0.5
3,433,124	-				+0.3
3,433,124	-				+1.6
3,433,133	+				+0.8
3,433,205	-				+0.5
3,433,205	-				-1.4
3,433,205	-				+0.2
3,433,205	-				-1.3
3,433,207	+				+0.3
3,433,208	-				+0.3
3,433,208	-				+0.6
3,433,208	-				-0.5
3,433,235	-				+0.3
3,433,274	-				+0.2
3,433,274	-				+0.9
3,433,535	-		PFLU_RS15320	0.29	+0.1
3,433,535	-		PFLU_RS15320	0.29	+0.1
3,433,535	-		PFLU_RS15320	0.29	+0.1
3,433,588	+		PFLU_RS15320	0.33	+0.3
3,433,588	+		PFLU_RS15320	0.33	-0.3
3,433,588	+		PFLU_RS15320	0.33	-0.6
3,433,588	+		PFLU_RS15320	0.33	-0.3
3,433,588	+		PFLU_RS15320	0.33	+0.1
3,433,588	+		PFLU_RS15320	0.33	-0.1
3,433,589	-		PFLU_RS15320	0.33	-0.2
3,433,589	-		PFLU_RS15320	0.33	+0.3
3,433,589	-		PFLU_RS15320	0.33	+0.2
3,433,589	-		PFLU_RS15320	0.33	-1.7
3,433,589	-		PFLU_RS15320	0.33	-0.7
3,433,630	+		PFLU_RS15320	0.36	+1.0
3,433,631	-		PFLU_RS15320	0.36	+0.5
3,433,631	-		PFLU_RS15320	0.36	+1.4
3,433,647	+		PFLU_RS15320	0.38	+0.9
3,433,648	-		PFLU_RS15320	0.38	+0.8
3,433,648	-		PFLU_RS15320	0.38	-0.9
3,433,671	+		PFLU_RS15320	0.40	-0.5
3,433,671	+		PFLU_RS15320	0.40	-0.4
3,433,671	+		PFLU_RS15320	0.40	-0.8
3,433,671	+		PFLU_RS15320	0.40	+0.5
3,433,672	-		PFLU_RS15320	0.40	+0.6
3,433,679	-		PFLU_RS15320	0.40	+1.0
3,433,756	+		PFLU_RS15320	0.46	+0.6
3,433,756	+		PFLU_RS15320	0.46	+0.4
3,433,756	+		PFLU_RS15320	0.46	-0.2
3,433,756	+		PFLU_RS15320	0.46	-0.0
3,433,757	-		PFLU_RS15320	0.46	-0.1
3,433,757	-		PFLU_RS15320	0.46	+0.6
3,433,757	-		PFLU_RS15320	0.46	+0.0
3,433,757	-		PFLU_RS15320	0.46	+1.5
3,433,831	-		PFLU_RS15320	0.52	-0.8
3,433,831	-		PFLU_RS15320	0.52	+1.0
3,433,913	-		PFLU_RS15320	0.58	-2.8
3,434,056	+		PFLU_RS15320	0.68	+0.1
3,434,056	+		PFLU_RS15320	0.68	+0.0
3,434,056	+		PFLU_RS15320	0.68	+0.2
3,434,056	+		PFLU_RS15320	0.68	+0.6
3,434,057	-		PFLU_RS15320	0.69	+1.5
3,434,057	-		PFLU_RS15320	0.69	+0.4
3,434,057	-		PFLU_RS15320	0.69	-0.1
3,434,059	+		PFLU_RS15320	0.69	-1.2
3,434,059	+		PFLU_RS15320	0.69	-0.4
3,434,059	+		PFLU_RS15320	0.69	+0.8
3,434,059	+		PFLU_RS15320	0.69	+0.6
3,434,060	-		PFLU_RS15320	0.69	-0.3
3,434,060	-		PFLU_RS15320	0.69	+0.5
3,434,060	-		PFLU_RS15320	0.69	+0.2
3,434,060	-		PFLU_RS15320	0.69	+0.3
3,434,060	-		PFLU_RS15320	0.69	+0.9
3,434,060	-		PFLU_RS15320	0.69	+1.0
3,434,060	-		PFLU_RS15320	0.69	+0.4
3,434,060	-		PFLU_RS15320	0.69	+0.4
3,434,060	-		PFLU_RS15320	0.69	-0.6
3,434,152	+		PFLU_RS15320	0.76	+0.6
3,434,161	+		PFLU_RS15320	0.76	+0.3
3,434,200	+		PFLU_RS15320	0.79	+0.3
3,434,200	+		PFLU_RS15320	0.79	+0.1
3,434,201	-		PFLU_RS15320	0.79	+0.4
3,434,209	+		PFLU_RS15320	0.80	-0.3
3,434,209	+		PFLU_RS15320	0.80	-0.1
3,434,209	+		PFLU_RS15320	0.80	-1.1
3,434,209	+		PFLU_RS15320	0.80	-0.3
3,434,209	+		PFLU_RS15320	0.80	+0.5
3,434,209	+		PFLU_RS15320	0.80	+0.0
3,434,209	+		PFLU_RS15320	0.80	+1.1
3,434,210	-		PFLU_RS15320	0.80	+1.5
3,434,210	-		PFLU_RS15320	0.80	-0.1
3,434,227	+		PFLU_RS15320	0.81	-1.1
3,434,227	+		PFLU_RS15320	0.81	+0.1
3,434,227	+		PFLU_RS15320	0.81	+1.5
3,434,228	-		PFLU_RS15320	0.81	-1.3
3,434,228	-		PFLU_RS15320	0.81	+0.9
3,434,228	-		PFLU_RS15320	0.81	-0.0
3,434,231	+		PFLU_RS15320	0.82	+0.3
3,434,284	+		PFLU_RS15320	0.86	-0.3
3,434,284	+		PFLU_RS15320	0.86	+0.2
3,434,284	+		PFLU_RS15320	0.86	-0.3
3,434,284	+		PFLU_RS15320	0.86	+0.4
3,434,284	+		PFLU_RS15320	0.86	-0.3
3,434,284	+		PFLU_RS15320	0.86	-0.4
3,434,284	+		PFLU_RS15320	0.86	+1.0
3,434,284	+		PFLU_RS15320	0.86	+0.2
3,434,284	+		PFLU_RS15320	0.86	+0.6
3,434,284	+		PFLU_RS15320	0.86	+0.6
3,434,285	-		PFLU_RS15320	0.86	+0.7
3,434,285	-		PFLU_RS15320	0.86	-2.0
3,434,285	-		PFLU_RS15320	0.86	-0.7
3,434,290	+		PFLU_RS15320	0.86	-1.4
3,434,290	+		PFLU_RS15320	0.86	-1.8
3,434,290	+		PFLU_RS15320	0.86	-0.0
3,434,290	+		PFLU_RS15320	0.86	-0.0
3,434,290	+		PFLU_RS15320	0.86	-0.7
3,434,290	+		PFLU_RS15320	0.86	+0.1
3,434,291	-		PFLU_RS15320	0.86	-0.7
3,434,291	-		PFLU_RS15320	0.86	-0.4
3,434,384	+				-0.6
3,434,401	+				-0.2
3,434,401	+				+0.2
3,434,402	-				+0.5
3,434,402	-				-0.6
3,434,402	-				+0.2
3,434,529	+				-0.2
3,434,530	-				-0.6
3,434,530	-				+1.6
3,434,530	-				+0.2
3,434,646	+		PFLU_RS15325	0.13	+0.1
3,434,646	+		PFLU_RS15325	0.13	+1.0
3,434,646	+		PFLU_RS15325	0.13	-0.0
3,434,646	+		PFLU_RS15325	0.13	+0.6
3,434,646	+		PFLU_RS15325	0.13	+1.0
3,434,647	-		PFLU_RS15325	0.13	-2.0
3,434,647	-		PFLU_RS15325	0.13	+0.3
3,434,647	-		PFLU_RS15325	0.13	-2.3
3,434,647	-		PFLU_RS15325	0.13	-1.1
3,434,647	-		PFLU_RS15325	0.13	-0.1
3,434,649	+		PFLU_RS15325	0.13	+0.6
3,434,649	+		PFLU_RS15325	0.13	+0.4
3,435,171	+		PFLU_RS15325	0.53	-1.7
3,435,171	+		PFLU_RS15325	0.53	-0.4
3,435,171	+		PFLU_RS15325	0.53	+1.6
3,435,172	-		PFLU_RS15325	0.53	-0.2
3,435,172	-		PFLU_RS15325	0.53	+1.7
3,435,172	-		PFLU_RS15325	0.53	+0.4
3,435,172	-		PFLU_RS15325	0.53	-1.3
3,435,172	-		PFLU_RS15325	0.53	+0.3
3,435,172	-		PFLU_RS15325	0.53	+0.8