Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS12145

Experiment: D-Xylose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose (C)
2,693,937	+		PFLU_RS30715	0.17	+0.0
2,693,937	+		PFLU_RS30715	0.17	-0.0
2,693,938	-		PFLU_RS30715	0.17	+0.6
2,693,940	+		PFLU_RS30715	0.18	-0.5
2,693,980	+		PFLU_RS30715	0.29	+0.6
2,693,981	-		PFLU_RS30715	0.29	-0.5
2,693,981	-		PFLU_RS30715	0.29	+0.4
2,693,981	-		PFLU_RS30715	0.29	+0.5
2,694,043	-		PFLU_RS30715	0.47	-0.9
2,694,058	+		PFLU_RS30715	0.51	+0.4
2,694,059	-		PFLU_RS30715	0.52	+1.4
2,694,118	+		PFLU_RS30715	0.68	+0.6
2,694,119	-		PFLU_RS30715	0.69	-1.1
2,694,124	+		PFLU_RS30715	0.70	-0.5
2,694,137	+		PFLU_RS30715	0.74	+0.4
2,694,137	+		PFLU_RS30715	0.74	+0.3
2,694,162	+		PFLU_RS30715	0.81	-0.5
2,694,233	-				-0.4
2,694,270	+				+0.4
2,694,271	-				+0.5
2,694,296	-				+0.3
2,694,296	-				-0.6
2,694,296	-				+0.2
2,694,296	-				+0.5
2,694,296	-				+0.5
2,694,296	-				-0.4
2,694,340	-				+1.0
2,694,340	-				-0.2
2,694,459	+		PFLU_RS12140	0.24	+0.3
2,694,459	+		PFLU_RS12140	0.24	-0.1
2,694,459	+		PFLU_RS12140	0.24	+0.4
2,694,459	+		PFLU_RS12140	0.24	+0.2
2,694,459	+		PFLU_RS12140	0.24	+0.7
2,694,459	+		PFLU_RS12140	0.24	-0.5
2,694,459	+		PFLU_RS12140	0.24	+0.3
2,694,459	+		PFLU_RS12140	0.24	+0.5
2,694,460	-		PFLU_RS12140	0.24	-2.5
2,694,460	-		PFLU_RS12140	0.24	-0.9
2,694,460	-		PFLU_RS12140	0.24	-0.9
2,694,460	-		PFLU_RS12140	0.24	+0.3
2,694,460	-		PFLU_RS12140	0.24	-0.3
2,694,460	-		PFLU_RS12140	0.24	+0.4
2,694,463	+		PFLU_RS12140	0.25	-2.9
2,694,463	+		PFLU_RS12140	0.25	+0.5
2,694,463	+		PFLU_RS12140	0.25	+1.6
2,694,463	+		PFLU_RS12140	0.25	+0.6
2,694,463	+		PFLU_RS12140	0.25	+0.8
2,694,464	-		PFLU_RS12140	0.25	+0.7
2,694,464	-		PFLU_RS12140	0.25	+0.6
2,694,533	-		PFLU_RS12140	0.45	-0.2
2,694,540	-		PFLU_RS12140	0.47	-0.3
2,694,540	-		PFLU_RS12140	0.47	+0.1
2,694,540	-		PFLU_RS12140	0.47	+0.2
2,694,540	-		PFLU_RS12140	0.47	+0.4
2,694,540	-		PFLU_RS12140	0.47	+0.4
2,694,546	+		PFLU_RS12140	0.49	+0.2
2,694,546	+		PFLU_RS12140	0.49	+0.6
2,694,546	+		PFLU_RS12140	0.49	+0.6
2,694,546	+		PFLU_RS12140	0.49	+0.6
2,694,546	+		PFLU_RS12140	0.49	-2.2
2,694,546	+		PFLU_RS12140	0.49	-0.2
2,694,547	-		PFLU_RS12140	0.49	-1.4
2,694,547	-		PFLU_RS12140	0.49	-0.6
2,694,547	-		PFLU_RS12140	0.49	-0.5
2,694,547	-		PFLU_RS12140	0.49	-0.9
2,694,547	-		PFLU_RS12140	0.49	+0.0
2,694,547	-		PFLU_RS12140	0.49	+1.3
2,694,547	-		PFLU_RS12140	0.49	+0.6
2,694,547	-		PFLU_RS12140	0.49	+0.4
2,694,715	+				+0.5
2,694,716	-				-0.6
2,694,741	+				+0.3
2,694,741	+				+1.4
2,694,742	-				+0.3
2,694,765	+				-0.6
2,694,765	+				+0.4
2,694,765	+				-1.1
2,694,766	-				+0.5
2,694,766	-				+0.3
2,694,767	+				+0.1
2,694,767	+				-0.0
2,694,767	+				+0.4
2,694,767	+				-0.6
2,694,767	+				-0.7
2,694,767	+				-1.5
2,694,767	+				+1.1
2,694,767	+				-0.3
2,694,768	-				-0.9
2,694,768	-				+0.7
2,694,768	-				-0.0
2,694,768	-				+1.7
2,694,768	-				+0.7
2,694,771	+				+0.1
2,694,771	+				+0.6
2,694,771	+				-0.5
2,694,771	+				-1.1
2,694,771	+				-0.0
2,694,772	-				-1.5
2,694,772	-				+0.6
2,694,772	-				-2.4
2,694,772	-				+1.0
2,694,772	-				+0.9
2,694,772	-				+0.3
2,694,772	-				-0.7
2,694,790	+				+0.3
2,694,803	+				-0.5
2,694,853	+				-0.5
2,694,853	+				+0.8
2,694,853	+				-0.1
2,694,854	-				-0.5
2,694,854	-				-0.7
2,694,854	-				+1.0
2,694,854	-				+0.5
2,694,854	-				+0.0
2,694,859	-				+1.0
2,694,867	+				+2.0
2,694,867	+				+0.1
2,694,867	+				+0.1
2,694,867	+				+0.7
2,694,867	+				-1.1
2,694,867	+				+0.5
2,694,868	-				+0.9
2,694,868	-				+0.5
2,694,868	-				-0.2
2,694,891	+				+0.4
2,694,891	+				+0.8
2,694,891	+				+1.6
2,694,892	-				-0.4
2,694,892	-				+0.9
2,694,892	-				-1.5
2,694,892	-				+1.2
2,694,892	-				-0.2
2,694,904	+				+0.8
2,694,904	+				+1.4
2,694,904	+				-0.1
2,694,904	+				+0.7
2,694,904	+				-1.4
2,694,905	-				+0.3
2,694,905	-				-1.5
2,694,905	-				+0.2
2,694,930	-				+0.1
2,694,993	+		PFLU_RS12145	0.30	-1.2
2,694,993	+		PFLU_RS12145	0.30	+1.5
2,694,994	-		PFLU_RS12145	0.30	-1.1
2,695,153	+				-0.4
2,695,153	+				-0.6
2,695,153	+				+0.9
2,695,153	+				-1.4
2,695,153	+				+0.8
2,695,153	+				-0.3
2,695,153	+				-0.5
2,695,153	+				+1.1
2,695,153	+				-0.5
2,695,153	+				+0.0
2,695,153	+				+0.4
2,695,153	+				+0.5
2,695,153	+				-1.4
2,695,153	+				-1.3
2,695,153	+				-0.2
2,695,153	+				+1.3
2,695,154	-				+0.1
2,695,154	-				+1.0
2,695,154	-				-0.0
2,695,154	-				-0.1
2,695,154	-				-0.0
2,695,154	-				-0.5
2,695,154	-				+0.0
2,695,154	-				+0.3
2,695,154	-				+0.2
2,695,154	-				+0.6
2,695,154	-				-0.2
2,695,154	-				+0.9
2,695,157	+				-1.0
2,695,157	+				+0.9
2,695,158	-				-1.3
2,695,250	+				-1.2
2,695,250	+				+0.8
2,695,250	+				+0.7
2,695,251	-				+0.3
2,695,251	-				+1.1
2,695,251	-				-1.2
2,695,265	+				+0.7
2,695,266	-				+1.0
2,695,266	-				+0.7
2,695,266	-				+0.3
2,695,305	+				+1.1
2,695,305	+				-0.7
2,695,305	+				+0.2
2,695,306	-				+0.5
2,695,306	-				+0.4
2,695,306	-				-2.3
2,695,309	+				+0.6
2,695,309	+				+0.7
2,695,310	-				+0.1
2,695,351	-				+0.7
2,695,355	+				+0.2
2,695,423	+				-2.0
2,695,443	+				+0.8
2,695,444	-				+0.5
2,695,482	-				-1.1
2,695,482	-				-0.6
2,695,490	+				+0.5
2,695,491	-				+0.8
2,695,620	-		PFLU_RS12150	0.14	+1.9
2,695,667	+		PFLU_RS12150	0.19	+0.7
2,695,668	-		PFLU_RS12150	0.19	-0.0
2,695,668	-		PFLU_RS12150	0.19	+0.8
2,695,686	+		PFLU_RS12150	0.21	-0.2
2,695,687	-		PFLU_RS12150	0.21	+0.7
2,695,687	-		PFLU_RS12150	0.21	+0.8
2,695,708	+		PFLU_RS12150	0.23	+0.5
2,695,709	-		PFLU_RS12150	0.23	-0.7
2,695,709	-		PFLU_RS12150	0.23	+0.4
2,695,709	-		PFLU_RS12150	0.23	-1.7
2,695,739	+		PFLU_RS12150	0.26	+1.1
2,695,739	+		PFLU_RS12150	0.26	+0.0
2,695,739	+		PFLU_RS12150	0.26	-1.6
2,695,740	-		PFLU_RS12150	0.26	+1.1
2,695,749	+		PFLU_RS12150	0.27	+1.3
2,695,750	-		PFLU_RS12150	0.28	-0.2
2,695,750	-		PFLU_RS12150	0.28	-0.2
2,695,750	-		PFLU_RS12150	0.28	-1.0
2,695,750	-		PFLU_RS12150	0.28	-0.3
2,695,750	-		PFLU_RS12150	0.28	-0.9
2,695,750	-		PFLU_RS12150	0.28	+0.4
2,695,763	+		PFLU_RS12150	0.29	-0.4
2,695,909	+		PFLU_RS12150	0.44	+0.8
2,695,910	-		PFLU_RS12150	0.44	+0.3
2,695,910	-		PFLU_RS12150	0.44	+1.0
2,695,921	+		PFLU_RS12150	0.46	+1.3
2,695,921	+		PFLU_RS12150	0.46	-0.4
2,695,938	+		PFLU_RS12150	0.47	-0.2
2,695,938	+		PFLU_RS12150	0.47	+0.6
2,695,939	-		PFLU_RS12150	0.47	+0.6
2,695,968	+		PFLU_RS12150	0.51	+0.1
2,695,993	+		PFLU_RS12150	0.53	+0.7
2,696,076	-		PFLU_RS12150	0.62	+1.4
2,696,156	-		PFLU_RS12150	0.70	-0.5
2,696,159	-		PFLU_RS12150	0.71	+0.2
2,696,159	-		PFLU_RS12150	0.71	-1.3
2,696,159	-		PFLU_RS12150	0.71	-0.6
2,696,159	-		PFLU_RS12150	0.71	+0.5