Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS07880

Experiment: D-Xylose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose (C)
1,753,725	+				-0.5
1,753,725	+				+0.6
1,753,924	+		PFLU_RS07875	0.58	-1.1
1,753,924	+		PFLU_RS07875	0.58	+0.1
1,753,924	+		PFLU_RS07875	0.58	-0.4
1,753,925	-		PFLU_RS07875	0.58	+0.1
1,753,925	-		PFLU_RS07875	0.58	+0.2
1,753,975	+		PFLU_RS07875	0.81	-0.6
1,753,975	+		PFLU_RS07875	0.81	+0.6
1,753,975	+		PFLU_RS07875	0.81	+1.3
1,753,975	+		PFLU_RS07875	0.81	-3.2
1,753,975	+		PFLU_RS07875	0.81	+0.7
1,753,976	-		PFLU_RS07875	0.81	+0.4
1,753,976	-		PFLU_RS07875	0.81	-0.7
1,753,976	-		PFLU_RS07875	0.81	+0.4
1,753,976	-		PFLU_RS07875	0.81	-1.6
1,753,976	-		PFLU_RS07875	0.81	+0.1
1,753,976	-		PFLU_RS07875	0.81	+0.3
1,753,976	-		PFLU_RS07875	0.81	-0.9
1,753,979	+		PFLU_RS07875	0.82	+1.0
1,753,979	+		PFLU_RS07875	0.82	+0.0
1,753,979	+		PFLU_RS07875	0.82	-1.4
1,753,979	+		PFLU_RS07875	0.82	+1.1
1,753,979	+		PFLU_RS07875	0.82	-1.3
1,753,979	+		PFLU_RS07875	0.82	+0.3
1,753,979	+		PFLU_RS07875	0.82	+0.7
1,753,979	+		PFLU_RS07875	0.82	+1.7
1,753,979	+		PFLU_RS07875	0.82	+0.4
1,753,979	+		PFLU_RS07875	0.82	-0.5
1,753,980	-		PFLU_RS07875	0.83	+0.2
1,753,980	-		PFLU_RS07875	0.83	+0.2
1,753,980	-		PFLU_RS07875	0.83	+0.7
1,753,980	-		PFLU_RS07875	0.83	-0.1
1,753,980	-		PFLU_RS07875	0.83	-0.9
1,753,988	+		PFLU_RS07875	0.86	-0.6
1,753,988	+		PFLU_RS07875	0.86	+1.0
1,753,988	+		PFLU_RS07875	0.86	-1.7
1,753,988	+		PFLU_RS07875	0.86	-0.0
1,753,988	+		PFLU_RS07875	0.86	+0.5
1,753,988	+		PFLU_RS07875	0.86	+0.7
1,753,988	+		PFLU_RS07875	0.86	+1.7
1,753,989	-		PFLU_RS07875	0.87	-0.1
1,753,989	-		PFLU_RS07875	0.87	-0.3
1,754,002	-				-0.8
1,754,033	-				-0.4
1,754,082	-				-0.5
1,754,279	+				-0.2
1,754,375	+				-0.1
1,754,376	-				-1.2
1,754,376	-				-0.3
1,754,443	-				+0.1
1,754,532	+		PFLU_RS07880	0.21	+0.2
1,754,547	+		PFLU_RS07880	0.24	+0.1
1,754,575	-		PFLU_RS07880	0.28	+0.8
1,754,583	+		PFLU_RS07880	0.29	-0.5
1,754,583	+		PFLU_RS07880	0.29	-0.2
1,754,593	-		PFLU_RS07880	0.31	+1.5
1,754,664	+		PFLU_RS07880	0.41	+0.2
1,754,664	+		PFLU_RS07880	0.41	+0.5
1,754,665	-		PFLU_RS07880	0.42	+0.1
1,754,666	+		PFLU_RS07880	0.42	+1.3
1,754,666	+		PFLU_RS07880	0.42	-0.5
1,754,666	+		PFLU_RS07880	0.42	-0.1
1,754,666	+		PFLU_RS07880	0.42	+0.3
1,754,666	+		PFLU_RS07880	0.42	-1.5
1,754,666	+		PFLU_RS07880	0.42	+0.5
1,754,666	+		PFLU_RS07880	0.42	-0.2
1,754,666	+		PFLU_RS07880	0.42	-0.9
1,754,666	+		PFLU_RS07880	0.42	-0.2
1,754,666	+		PFLU_RS07880	0.42	-0.0
1,754,666	+		PFLU_RS07880	0.42	+0.4
1,754,667	-		PFLU_RS07880	0.42	+0.3
1,754,667	-		PFLU_RS07880	0.42	+0.5
1,754,667	-		PFLU_RS07880	0.42	+0.3
1,754,667	-		PFLU_RS07880	0.42	+0.1
1,754,667	-		PFLU_RS07880	0.42	+0.6
1,754,667	-		PFLU_RS07880	0.42	-2.4
1,754,667	-		PFLU_RS07880	0.42	+0.2
1,754,667	-		PFLU_RS07880	0.42	+0.2
1,754,667	-		PFLU_RS07880	0.42	+0.6
1,754,672	-		PFLU_RS07880	0.43	+0.2
1,754,672	-		PFLU_RS07880	0.43	-0.2
1,754,758	-		PFLU_RS07880	0.56	+0.6
1,754,767	+		PFLU_RS07880	0.57	+1.2
1,754,768	-		PFLU_RS07880	0.57	-1.8
1,754,768	-		PFLU_RS07880	0.57	+4.1
1,754,841	+		PFLU_RS07880	0.68	-2.1
1,754,842	-		PFLU_RS07880	0.68	+1.1
1,754,843	+		PFLU_RS07880	0.69	+1.5
1,754,844	-		PFLU_RS07880	0.69	+0.3
1,754,844	-		PFLU_RS07880	0.69	-1.0
1,754,844	-		PFLU_RS07880	0.69	+0.8
1,754,845	+		PFLU_RS07880	0.69	-2.4
1,754,845	+		PFLU_RS07880	0.69	+1.0
1,754,845	+		PFLU_RS07880	0.69	+0.7
1,754,845	+		PFLU_RS07880	0.69	+0.8
1,754,845	+		PFLU_RS07880	0.69	-0.4
1,754,845	+		PFLU_RS07880	0.69	+1.8
1,754,845	+		PFLU_RS07880	0.69	-0.4
1,754,846	-		PFLU_RS07880	0.69	-2.3
1,754,846	-		PFLU_RS07880	0.69	+0.1
1,754,846	-		PFLU_RS07880	0.69	-1.5
1,754,846	-		PFLU_RS07880	0.69	+0.5
1,754,846	-		PFLU_RS07880	0.69	+0.8
1,754,846	-		PFLU_RS07880	0.69	+0.7
1,754,866	-		PFLU_RS07880	0.72	+0.5
1,754,873	+		PFLU_RS07880	0.73	-0.2
1,754,873	+		PFLU_RS07880	0.73	+1.6
1,754,873	+		PFLU_RS07880	0.73	+0.5
1,754,874	-		PFLU_RS07880	0.73	+0.9
1,754,874	-		PFLU_RS07880	0.73	-0.0
1,754,874	-		PFLU_RS07880	0.73	-0.8
1,754,874	-		PFLU_RS07880	0.73	+2.1
1,754,953	-		PFLU_RS07880	0.85	-0.6
1,754,968	-		PFLU_RS07880	0.88	-0.0
1,755,061	+				+0.5
1,755,062	-				-0.5
1,755,062	-				+0.7
1,755,106	+				+1.7
1,755,107	-				-1.1
1,755,112	+				+0.8
1,755,112	+				+0.3
1,755,143	+				-0.0
1,755,143	+				+1.2
1,755,143	+				+0.7
1,755,143	+				+0.7
1,755,143	+				-0.6
1,755,143	+				-0.1
1,755,144	-				+0.6
1,755,144	-				-1.2
1,755,144	-				-0.9
1,755,145	+				+0.9
1,755,145	+				+0.7
1,755,165	+				+0.1
1,755,165	+				+0.0
1,755,166	-				-0.3
1,755,166	-				-1.0
1,755,166	-				-0.0
1,755,166	-				-1.2
1,755,190	+				-0.1
1,755,191	-				-0.4
1,755,201	+				-0.1
1,755,201	+				+0.6
1,755,201	+				+0.3
1,755,201	+				+1.0
1,755,202	-				-0.5
1,755,202	-				-0.7
1,755,202	-				-0.1
1,755,202	-				+1.7
1,755,202	-				-0.1
1,755,213	+				+0.6
1,755,231	-				-1.6
1,755,231	-				-2.8
1,755,238	+				-1.8
1,755,238	+				+1.5
1,755,238	+				-1.1
1,755,239	-				-0.0
1,755,276	+				+1.0
1,755,277	-				-1.3
1,755,313	+				+0.2
1,755,313	+				+0.3
1,755,313	+				-1.6
1,755,316	-				-1.1
1,755,316	-				+0.5
1,755,316	-				-2.5
1,755,316	-				+0.4
1,755,444	+		PFLU_RS07885	0.17	+0.2
1,755,512	+		PFLU_RS07885	0.23	-0.1
1,755,513	-		PFLU_RS07885	0.23	+1.1
1,755,513	-		PFLU_RS07885	0.23	+0.7
1,755,576	-		PFLU_RS07885	0.28	+0.7
1,755,690	-		PFLU_RS07885	0.38	+0.8
1,755,723	+		PFLU_RS07885	0.40	-0.3
1,755,723	+		PFLU_RS07885	0.40	+1.2
1,755,724	-		PFLU_RS07885	0.41	+0.1
1,755,724	-		PFLU_RS07885	0.41	+0.1
1,755,724	-		PFLU_RS07885	0.41	-1.7
1,755,724	-		PFLU_RS07885	0.41	-0.2
1,755,724	-		PFLU_RS07885	0.41	-1.1