Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS04355

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS04350 and PFLU_RS04355 are separated by 152 nucleotidesPFLU_RS04355 and PFLU_RS04360 overlap by 8 nucleotides PFLU_RS04350: PFLU_RS04350 - metalloprotease PmbA, at 983,970 to 985,316 _RS04350 PFLU_RS04355: PFLU_RS04355 - hypothetical protein, at 985,469 to 985,864 _RS04355 PFLU_RS04360: PFLU_RS04360 - class II fumarate hydratase, at 985,857 to 987,233 _RS04360 Position (kb) 985 986Strain fitness (log2 ratio) -2 -1 0 1 2at 984.477 kb on + strand, within PFLU_RS04350at 984.524 kb on + strand, within PFLU_RS04350at 984.525 kb on - strand, within PFLU_RS04350at 984.525 kb on - strand, within PFLU_RS04350at 984.582 kb on + strand, within PFLU_RS04350at 984.583 kb on - strand, within PFLU_RS04350at 984.730 kb on + strand, within PFLU_RS04350at 984.730 kb on + strand, within PFLU_RS04350at 984.730 kb on + strand, within PFLU_RS04350at 984.730 kb on + strand, within PFLU_RS04350at 984.731 kb on - strand, within PFLU_RS04350at 984.731 kb on - strand, within PFLU_RS04350at 984.731 kb on - strand, within PFLU_RS04350at 984.731 kb on - strand, within PFLU_RS04350at 984.731 kb on - strand, within PFLU_RS04350at 984.731 kb on - strand, within PFLU_RS04350at 984.731 kb on - strand, within PFLU_RS04350at 984.731 kb on - strand, within PFLU_RS04350at 984.863 kb on + strand, within PFLU_RS04350at 984.864 kb on - strand, within PFLU_RS04350at 984.903 kb on + strand, within PFLU_RS04350at 984.903 kb on + strand, within PFLU_RS04350at 984.904 kb on - strand, within PFLU_RS04350at 984.904 kb on - strand, within PFLU_RS04350at 984.904 kb on - strand, within PFLU_RS04350at 984.904 kb on - strand, within PFLU_RS04350at 984.904 kb on - strand, within PFLU_RS04350at 984.942 kb on + strand, within PFLU_RS04350at 984.942 kb on + strand, within PFLU_RS04350at 984.942 kb on + strand, within PFLU_RS04350at 984.942 kb on + strand, within PFLU_RS04350at 984.943 kb on - strand, within PFLU_RS04350at 984.943 kb on - strand, within PFLU_RS04350at 984.943 kb on - strand, within PFLU_RS04350at 984.943 kb on - strand, within PFLU_RS04350at 984.957 kb on + strand, within PFLU_RS04350at 984.957 kb on + strand, within PFLU_RS04350at 984.957 kb on + strand, within PFLU_RS04350at 984.957 kb on + strand, within PFLU_RS04350at 984.957 kb on + strand, within PFLU_RS04350at 984.958 kb on - strand, within PFLU_RS04350at 984.958 kb on - strand, within PFLU_RS04350at 984.958 kb on - strand, within PFLU_RS04350at 984.958 kb on - strand, within PFLU_RS04350at 984.958 kb on - strand, within PFLU_RS04350at 984.958 kb on - strand, within PFLU_RS04350at 984.958 kb on - strand, within PFLU_RS04350at 984.958 kb on - strand, within PFLU_RS04350at 985.010 kb on + strand, within PFLU_RS04350at 985.125 kb on + strand, within PFLU_RS04350at 985.125 kb on + strand, within PFLU_RS04350at 985.125 kb on + strand, within PFLU_RS04350at 985.125 kb on + strand, within PFLU_RS04350at 985.126 kb on - strand, within PFLU_RS04350at 985.126 kb on - strand, within PFLU_RS04350at 985.126 kb on - strand, within PFLU_RS04350at 985.214 kb on + strandat 985.214 kb on + strandat 985.214 kb on + strandat 985.214 kb on + strandat 985.215 kb on - strandat 985.215 kb on - strandat 985.215 kb on - strandat 985.215 kb on - strandat 985.215 kb on - strandat 985.215 kb on - strandat 985.215 kb on - strandat 985.434 kb on + strandat 985.435 kb on - strandat 985.435 kb on - strandat 985.440 kb on + strandat 985.444 kb on + strandat 985.444 kb on + strandat 985.445 kb on - strandat 985.496 kb on + strandat 985.496 kb on + strandat 985.496 kb on + strandat 985.497 kb on - strandat 985.497 kb on - strandat 985.497 kb on - strandat 985.574 kb on + strand, within PFLU_RS04355at 985.574 kb on + strand, within PFLU_RS04355at 985.574 kb on + strand, within PFLU_RS04355at 985.574 kb on + strand, within PFLU_RS04355at 985.574 kb on + strand, within PFLU_RS04355at 985.574 kb on + strand, within PFLU_RS04355at 985.574 kb on + strand, within PFLU_RS04355at 985.574 kb on + strand, within PFLU_RS04355at 985.574 kb on + strand, within PFLU_RS04355at 985.575 kb on - strand, within PFLU_RS04355at 985.575 kb on - strand, within PFLU_RS04355at 985.575 kb on - strand, within PFLU_RS04355at 985.575 kb on - strand, within PFLU_RS04355at 985.575 kb on - strand, within PFLU_RS04355at 985.592 kb on + strand, within PFLU_RS04355at 985.802 kb on - strand, within PFLU_RS04355at 985.822 kb on + strand, within PFLU_RS04355at 985.822 kb on + strand, within PFLU_RS04355at 985.822 kb on + strand, within PFLU_RS04355at 985.823 kb on - strand, within PFLU_RS04355at 985.823 kb on - strand, within PFLU_RS04355at 985.823 kb on - strand, within PFLU_RS04355at 985.823 kb on - strand, within PFLU_RS04355at 985.852 kb on + strandat 985.852 kb on + strandat 985.852 kb on + strandat 985.852 kb on + strandat 985.852 kb on + strandat 985.852 kb on + strandat 985.852 kb on + strandat 985.853 kb on - strandat 985.853 kb on - strandat 985.853 kb on - strandat 985.853 kb on - strandat 985.862 kb on + strandat 985.862 kb on + strandat 985.863 kb on - strandat 985.863 kb on - strandat 985.920 kb on + strandat 985.920 kb on + strandat 985.920 kb on + strandat 985.920 kb on + strandat 985.920 kb on + strandat 985.920 kb on + strandat 985.920 kb on + strandat 985.921 kb on - strandat 985.921 kb on - strandat 985.921 kb on - strandat 985.921 kb on - strandat 985.921 kb on - strandat 985.921 kb on - strandat 985.921 kb on - strandat 985.921 kb on - strandat 985.921 kb on - strandat 986.132 kb on + strand, within PFLU_RS04360at 986.133 kb on - strand, within PFLU_RS04360at 986.133 kb on - strand, within PFLU_RS04360at 986.165 kb on + strand, within PFLU_RS04360at 986.165 kb on + strand, within PFLU_RS04360at 986.165 kb on + strand, within PFLU_RS04360at 986.165 kb on + strand, within PFLU_RS04360at 986.165 kb on + strand, within PFLU_RS04360at 986.165 kb on + strand, within PFLU_RS04360at 986.166 kb on - strand, within PFLU_RS04360

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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984,477 + PFLU_RS04350 0.38 +0.6
984,524 + PFLU_RS04350 0.41 +0.5
984,525 - PFLU_RS04350 0.41 +1.6
984,525 - PFLU_RS04350 0.41 +0.6
984,582 + PFLU_RS04350 0.45 -0.3
984,583 - PFLU_RS04350 0.46 -0.3
984,730 + PFLU_RS04350 0.56 +0.3
984,730 + PFLU_RS04350 0.56 -0.2
984,730 + PFLU_RS04350 0.56 +0.3
984,730 + PFLU_RS04350 0.56 -0.3
984,731 - PFLU_RS04350 0.56 -0.8
984,731 - PFLU_RS04350 0.56 +0.5
984,731 - PFLU_RS04350 0.56 +1.2
984,731 - PFLU_RS04350 0.56 -0.6
984,731 - PFLU_RS04350 0.56 -0.4
984,731 - PFLU_RS04350 0.56 +0.1
984,731 - PFLU_RS04350 0.56 +0.6
984,731 - PFLU_RS04350 0.56 -0.4
984,863 + PFLU_RS04350 0.66 +1.2
984,864 - PFLU_RS04350 0.66 -1.2
984,903 + PFLU_RS04350 0.69 -1.3
984,903 + PFLU_RS04350 0.69 +0.0
984,904 - PFLU_RS04350 0.69 +0.0
984,904 - PFLU_RS04350 0.69 +0.8
984,904 - PFLU_RS04350 0.69 +0.3
984,904 - PFLU_RS04350 0.69 -0.7
984,904 - PFLU_RS04350 0.69 +1.0
984,942 + PFLU_RS04350 0.72 +0.4
984,942 + PFLU_RS04350 0.72 +0.4
984,942 + PFLU_RS04350 0.72 -0.5
984,942 + PFLU_RS04350 0.72 +0.4
984,943 - PFLU_RS04350 0.72 -1.8
984,943 - PFLU_RS04350 0.72 +0.2
984,943 - PFLU_RS04350 0.72 -0.3
984,943 - PFLU_RS04350 0.72 +0.9
984,957 + PFLU_RS04350 0.73 +1.1
984,957 + PFLU_RS04350 0.73 -0.4
984,957 + PFLU_RS04350 0.73 -0.8
984,957 + PFLU_RS04350 0.73 -0.8
984,957 + PFLU_RS04350 0.73 -0.2
984,958 - PFLU_RS04350 0.73 -0.6
984,958 - PFLU_RS04350 0.73 +0.8
984,958 - PFLU_RS04350 0.73 +0.4
984,958 - PFLU_RS04350 0.73 +1.1
984,958 - PFLU_RS04350 0.73 +0.1
984,958 - PFLU_RS04350 0.73 -0.0
984,958 - PFLU_RS04350 0.73 +0.6
984,958 - PFLU_RS04350 0.73 +1.1
985,010 + PFLU_RS04350 0.77 +0.6
985,125 + PFLU_RS04350 0.86 -0.2
985,125 + PFLU_RS04350 0.86 +1.5
985,125 + PFLU_RS04350 0.86 -0.4
985,125 + PFLU_RS04350 0.86 -0.4
985,126 - PFLU_RS04350 0.86 +0.1
985,126 - PFLU_RS04350 0.86 -1.1
985,126 - PFLU_RS04350 0.86 +0.2
985,214 + +0.3
985,214 + +0.6
985,214 + -1.2
985,214 + -0.3
985,215 - -2.3
985,215 - +0.0
985,215 - +1.8
985,215 - +0.4
985,215 - -0.5
985,215 - +0.1
985,215 - -0.4
985,434 + -0.4
985,435 - +0.4
985,435 - +1.0
985,440 + +2.1
985,444 + +0.7
985,444 + -0.3
985,445 - +0.2
985,496 + +0.3
985,496 + +0.9
985,496 + +0.1
985,497 - +0.8
985,497 - -0.2
985,497 - -1.0
985,574 + PFLU_RS04355 0.27 -1.0
985,574 + PFLU_RS04355 0.27 +1.4
985,574 + PFLU_RS04355 0.27 -0.0
985,574 + PFLU_RS04355 0.27 -0.0
985,574 + PFLU_RS04355 0.27 +0.2
985,574 + PFLU_RS04355 0.27 +0.5
985,574 + PFLU_RS04355 0.27 -0.1
985,574 + PFLU_RS04355 0.27 +0.1
985,574 + PFLU_RS04355 0.27 +1.5
985,575 - PFLU_RS04355 0.27 -1.8
985,575 - PFLU_RS04355 0.27 +0.1
985,575 - PFLU_RS04355 0.27 +0.4
985,575 - PFLU_RS04355 0.27 +0.0
985,575 - PFLU_RS04355 0.27 -0.1
985,592 + PFLU_RS04355 0.31 -0.7
985,802 - PFLU_RS04355 0.84 -0.1
985,822 + PFLU_RS04355 0.89 +0.0
985,822 + PFLU_RS04355 0.89 +0.6
985,822 + PFLU_RS04355 0.89 +0.1
985,823 - PFLU_RS04355 0.89 -2.3
985,823 - PFLU_RS04355 0.89 +0.3
985,823 - PFLU_RS04355 0.89 -0.3
985,823 - PFLU_RS04355 0.89 -1.4
985,852 + -1.2
985,852 + +0.7
985,852 + +0.3
985,852 + -0.7
985,852 + -1.8
985,852 + +0.7
985,852 + +0.7
985,853 - +0.5
985,853 - +0.8
985,853 - -0.4
985,853 - -0.5
985,862 + +0.8
985,862 + +0.7
985,863 - -1.7
985,863 - -0.2
985,920 + -0.3
985,920 + -0.8
985,920 + +0.0
985,920 + +1.2
985,920 + +0.5
985,920 + +0.3
985,920 + -0.5
985,921 - +0.5
985,921 - -1.1
985,921 - +0.3
985,921 - +0.7
985,921 - +0.3
985,921 - -0.0
985,921 - +0.6
985,921 - +0.6
985,921 - +0.2
986,132 + PFLU_RS04360 0.20 +0.0
986,133 - PFLU_RS04360 0.20 +0.4
986,133 - PFLU_RS04360 0.20 +0.8
986,165 + PFLU_RS04360 0.22 -0.6
986,165 + PFLU_RS04360 0.22 +0.5
986,165 + PFLU_RS04360 0.22 +0.7
986,165 + PFLU_RS04360 0.22 -0.1
986,165 + PFLU_RS04360 0.22 +0.1
986,165 + PFLU_RS04360 0.22 +1.0
986,166 - PFLU_RS04360 0.22 -0.7

Or see this region's nucleotide sequence