Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03825 and PFLU_RS03830 overlap by 47 nucleotides PFLU_RS03830 and PFLU_RS03835 are separated by 193 nucleotides PFLU_RS03835 and PFLU_RS03840 overlap by 4 nucleotides
PFLU_RS03825: PFLU_RS03825 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 874,131 to 875,078
_RS03825
PFLU_RS03830: PFLU_RS03830 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 875,032 to 875,613
_RS03830
PFLU_RS03835: PFLU_RS03835 - type IV pilus modification protein PilV, at 875,807 to 876,292
_RS03835
PFLU_RS03840: PFLU_RS03840 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 876,289 to 876,996
_RS03840
Position (kb) 875
876 Strain fitness (log2 ratio) -1
0
1 at 874.045 kb on + strand at 875.468 kb on - strand, within PFLU_RS03830 at 875.498 kb on + strand, within PFLU_RS03830 at 875.498 kb on + strand, within PFLU_RS03830 at 875.498 kb on + strand, within PFLU_RS03830 at 875.499 kb on - strand, within PFLU_RS03830 at 875.646 kb on + strand at 875.646 kb on + strand at 875.646 kb on + strand at 875.647 kb on - strand at 875.650 kb on + strand at 875.650 kb on + strand at 875.650 kb on + strand at 875.650 kb on + strand at 875.651 kb on - strand at 875.651 kb on - strand at 875.651 kb on - strand at 875.651 kb on - strand at 875.651 kb on - strand at 875.651 kb on - strand at 875.652 kb on + strand at 875.652 kb on + strand at 875.653 kb on - strand at 875.653 kb on - strand at 875.686 kb on + strand at 875.686 kb on + strand at 875.686 kb on + strand at 875.686 kb on + strand at 875.687 kb on - strand at 875.687 kb on - strand at 875.697 kb on + strand at 875.698 kb on - strand at 875.698 kb on - strand at 875.698 kb on - strand at 875.741 kb on + strand at 875.805 kb on + strand at 875.893 kb on - strand, within PFLU_RS03835 at 875.951 kb on + strand, within PFLU_RS03835 at 875.951 kb on + strand, within PFLU_RS03835 at 875.951 kb on + strand, within PFLU_RS03835 at 875.951 kb on + strand, within PFLU_RS03835 at 875.952 kb on - strand, within PFLU_RS03835 at 875.952 kb on - strand, within PFLU_RS03835 at 875.952 kb on - strand, within PFLU_RS03835 at 875.952 kb on - strand, within PFLU_RS03835 at 875.997 kb on - strand, within PFLU_RS03835 at 876.038 kb on + strand, within PFLU_RS03835 at 876.038 kb on + strand, within PFLU_RS03835 at 876.038 kb on + strand, within PFLU_RS03835 at 876.039 kb on - strand, within PFLU_RS03835 at 876.039 kb on - strand, within PFLU_RS03835 at 876.039 kb on - strand, within PFLU_RS03835 at 876.039 kb on - strand, within PFLU_RS03835 at 876.125 kb on - strand, within PFLU_RS03835 at 876.125 kb on - strand, within PFLU_RS03835 at 876.125 kb on - strand, within PFLU_RS03835 at 876.264 kb on + strand at 876.265 kb on - strand at 876.456 kb on + strand, within PFLU_RS03840 at 876.457 kb on - strand, within PFLU_RS03840 at 876.513 kb on + strand, within PFLU_RS03840
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 874,045 + +0.5 875,468 - PFLU_RS03830 0.75 +0.9 875,498 + PFLU_RS03830 0.80 +0.0 875,498 + PFLU_RS03830 0.80 +1.0 875,498 + PFLU_RS03830 0.80 +1.7 875,499 - PFLU_RS03830 0.80 +0.4 875,646 + +0.7 875,646 + +0.5 875,646 + -0.1 875,647 - +0.3 875,650 + +0.0 875,650 + -0.4 875,650 + +0.9 875,650 + +0.2 875,651 - +0.4 875,651 - -0.4 875,651 - -0.4 875,651 - +0.4 875,651 - +1.0 875,651 - +0.8 875,652 + -0.3 875,652 + -0.6 875,653 - -0.7 875,653 - +0.1 875,686 + -1.2 875,686 + +0.9 875,686 + -1.2 875,686 + -0.2 875,687 - -0.1 875,687 - -0.0 875,697 + -0.2 875,698 - +0.4 875,698 - -0.6 875,698 - +0.8 875,741 + -0.0 875,805 + -0.1 875,893 - PFLU_RS03835 0.18 +0.2 875,951 + PFLU_RS03835 0.30 -0.3 875,951 + PFLU_RS03835 0.30 +1.0 875,951 + PFLU_RS03835 0.30 +0.6 875,951 + PFLU_RS03835 0.30 +0.5 875,952 - PFLU_RS03835 0.30 -0.1 875,952 - PFLU_RS03835 0.30 -0.2 875,952 - PFLU_RS03835 0.30 +0.1 875,952 - PFLU_RS03835 0.30 +0.7 875,997 - PFLU_RS03835 0.39 -0.1 876,038 + PFLU_RS03835 0.48 -0.5 876,038 + PFLU_RS03835 0.48 +1.3 876,038 + PFLU_RS03835 0.48 +0.6 876,039 - PFLU_RS03835 0.48 -0.7 876,039 - PFLU_RS03835 0.48 -0.3 876,039 - PFLU_RS03835 0.48 +1.4 876,039 - PFLU_RS03835 0.48 -0.0 876,125 - PFLU_RS03835 0.65 +0.3 876,125 - PFLU_RS03835 0.65 -0.5 876,125 - PFLU_RS03835 0.65 +0.1 876,264 + +0.6 876,265 - +0.3 876,456 + PFLU_RS03840 0.24 +0.1 876,457 - PFLU_RS03840 0.24 -0.3 876,513 + PFLU_RS03840 0.32 -0.2
Or see this region's nucleotide sequence