Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01690 and PFLU_RS01695 are separated by 295 nucleotides PFLU_RS01695 and PFLU_RS01700 are separated by 77 nucleotides PFLU_RS01700 and PFLU_RS01705 are separated by 448 nucleotides PFLU_RS01705 and PFLU_RS01710 are separated by 76 nucleotides
PFLU_RS01690: PFLU_RS01690 - nitrogen regulation protein NR(II), at 375,642 to 376,727
_RS01690
PFLU_RS01695: PFLU_RS01695 - cupin domain-containing protein, at 377,023 to 377,448
_RS01695
PFLU_RS01700: PFLU_RS01700 - chorismate mutase, at 377,526 to 378,062
_RS01700
PFLU_RS01705: PFLU_RS01705 - hypothetical protein, at 378,511 to 378,747
_RS01705
PFLU_RS01710: PFLU_RS01710 - type I glutamate--ammonia ligase, at 378,824 to 380,230
_RS01710
Position (kb) 377
378
379 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.639 kb on + strand at 376.640 kb on - strand at 376.640 kb on - strand at 376.640 kb on - strand at 376.640 kb on - strand at 376.640 kb on - strand at 376.640 kb on - strand at 376.640 kb on - strand at 376.640 kb on - strand at 376.640 kb on - strand at 376.696 kb on - strand at 376.696 kb on - strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.773 kb on + strand at 376.774 kb on - strand at 376.774 kb on - strand at 376.774 kb on - strand at 376.774 kb on - strand at 376.774 kb on - strand at 376.774 kb on - strand at 376.774 kb on - strand at 376.774 kb on - strand at 376.774 kb on - strand at 376.774 kb on - strand at 376.774 kb on - strand at 376.774 kb on - strand at 376.842 kb on - strand at 376.935 kb on + strand at 376.935 kb on + strand at 376.937 kb on + strand at 376.937 kb on + strand at 376.937 kb on + strand at 376.938 kb on - strand at 376.938 kb on - strand at 376.938 kb on - strand at 377.064 kb on - strand at 377.119 kb on + strand, within PFLU_RS01695 at 377.119 kb on + strand, within PFLU_RS01695 at 377.120 kb on - strand, within PFLU_RS01695 at 377.207 kb on + strand, within PFLU_RS01695 at 377.207 kb on + strand, within PFLU_RS01695 at 377.207 kb on + strand, within PFLU_RS01695 at 377.207 kb on + strand, within PFLU_RS01695 at 377.208 kb on - strand, within PFLU_RS01695 at 377.272 kb on + strand, within PFLU_RS01695 at 377.272 kb on + strand, within PFLU_RS01695 at 377.272 kb on + strand, within PFLU_RS01695 at 377.272 kb on + strand, within PFLU_RS01695 at 377.273 kb on - strand, within PFLU_RS01695 at 377.273 kb on - strand, within PFLU_RS01695 at 377.303 kb on + strand, within PFLU_RS01695 at 377.312 kb on + strand, within PFLU_RS01695 at 377.312 kb on + strand, within PFLU_RS01695 at 377.312 kb on + strand, within PFLU_RS01695 at 377.312 kb on + strand, within PFLU_RS01695 at 377.312 kb on + strand, within PFLU_RS01695 at 377.312 kb on + strand, within PFLU_RS01695 at 377.312 kb on + strand, within PFLU_RS01695 at 377.312 kb on + strand, within PFLU_RS01695 at 377.312 kb on + strand, within PFLU_RS01695 at 377.313 kb on - strand, within PFLU_RS01695 at 377.313 kb on - strand, within PFLU_RS01695 at 377.313 kb on - strand, within PFLU_RS01695 at 377.313 kb on - strand, within PFLU_RS01695 at 377.313 kb on - strand, within PFLU_RS01695 at 377.313 kb on - strand, within PFLU_RS01695 at 377.368 kb on + strand, within PFLU_RS01695 at 377.368 kb on + strand, within PFLU_RS01695 at 377.369 kb on - strand, within PFLU_RS01695 at 377.369 kb on - strand, within PFLU_RS01695 at 377.369 kb on - strand, within PFLU_RS01695 at 377.484 kb on - strand at 377.531 kb on + strand at 377.531 kb on + strand at 377.531 kb on + strand at 377.532 kb on - strand at 377.532 kb on - strand at 377.532 kb on - strand at 377.709 kb on + strand, within PFLU_RS01700 at 377.709 kb on + strand, within PFLU_RS01700 at 377.709 kb on + strand, within PFLU_RS01700 at 377.710 kb on - strand, within PFLU_RS01700 at 377.710 kb on - strand, within PFLU_RS01700 at 377.710 kb on - strand, within PFLU_RS01700 at 377.710 kb on - strand, within PFLU_RS01700 at 377.782 kb on + strand, within PFLU_RS01700 at 377.782 kb on + strand, within PFLU_RS01700 at 377.782 kb on + strand, within PFLU_RS01700 at 377.782 kb on + strand, within PFLU_RS01700 at 377.783 kb on - strand, within PFLU_RS01700 at 377.783 kb on - strand, within PFLU_RS01700 at 377.783 kb on - strand, within PFLU_RS01700 at 377.783 kb on - strand, within PFLU_RS01700 at 377.903 kb on + strand, within PFLU_RS01700 at 377.904 kb on - strand, within PFLU_RS01700 at 377.904 kb on - strand, within PFLU_RS01700 at 377.910 kb on + strand, within PFLU_RS01700 at 377.910 kb on + strand, within PFLU_RS01700 at 377.911 kb on - strand, within PFLU_RS01700 at 378.105 kb on + strand at 378.105 kb on + strand at 378.105 kb on + strand at 378.105 kb on + strand at 378.106 kb on - strand at 378.119 kb on + strand at 378.119 kb on + strand at 378.119 kb on + strand at 378.119 kb on + strand at 378.119 kb on + strand at 378.119 kb on + strand at 378.120 kb on - strand at 378.120 kb on - strand at 378.120 kb on - strand at 378.120 kb on - strand at 378.165 kb on + strand at 378.165 kb on + strand at 378.165 kb on + strand at 378.165 kb on + strand at 378.165 kb on + strand at 378.207 kb on - strand at 378.207 kb on - strand at 378.207 kb on - strand at 378.211 kb on + strand at 378.212 kb on - strand at 378.212 kb on - strand at 378.256 kb on + strand at 378.257 kb on - strand at 378.257 kb on - strand at 378.276 kb on + strand at 378.276 kb on + strand at 378.276 kb on + strand at 378.277 kb on - strand at 378.313 kb on + strand at 378.314 kb on - strand at 378.317 kb on - strand at 378.317 kb on - strand at 378.334 kb on + strand at 378.334 kb on + strand at 378.334 kb on + strand at 378.334 kb on + strand at 378.335 kb on - strand at 378.335 kb on - strand at 378.335 kb on - strand at 378.335 kb on - strand at 378.422 kb on + strand at 378.422 kb on + strand at 378.422 kb on + strand at 378.422 kb on + strand at 378.422 kb on + strand at 378.422 kb on + strand at 378.422 kb on + strand at 378.422 kb on + strand at 378.423 kb on - strand at 378.423 kb on - strand at 378.423 kb on - strand at 378.423 kb on - strand at 378.436 kb on + strand at 378.436 kb on + strand at 378.436 kb on + strand at 378.436 kb on + strand at 378.436 kb on + strand at 378.437 kb on - strand at 378.437 kb on - strand at 378.437 kb on - strand at 378.437 kb on - strand at 378.439 kb on + strand at 378.439 kb on + strand at 378.439 kb on + strand at 378.439 kb on + strand at 378.469 kb on + strand at 378.470 kb on - strand at 378.472 kb on + strand at 378.473 kb on - strand at 378.505 kb on + strand at 378.505 kb on + strand at 378.506 kb on - strand at 378.804 kb on + strand at 378.805 kb on - strand at 378.826 kb on - strand at 378.826 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 376,639 + +0.3 376,639 + +0.7 376,639 + -0.8 376,639 + -0.7 376,639 + -0.1 376,639 + +0.7 376,639 + +0.3 376,639 + -2.0 376,639 + +1.2 376,639 + +0.9 376,640 - +0.3 376,640 - +0.6 376,640 - +0.1 376,640 - +0.3 376,640 - +0.6 376,640 - +0.3 376,640 - +1.0 376,640 - +0.5 376,640 - -0.0 376,696 - +0.2 376,696 - +1.1 376,773 + +0.4 376,773 + -0.2 376,773 + +0.1 376,773 + +0.3 376,773 + +0.2 376,773 + +0.7 376,773 + -0.7 376,773 + +0.3 376,774 - -0.6 376,774 - -1.4 376,774 - +0.9 376,774 - -2.3 376,774 - -3.0 376,774 - -0.5 376,774 - +0.3 376,774 - -1.0 376,774 - +2.0 376,774 - +0.2 376,774 - -2.0 376,774 - +0.4 376,842 - -0.4 376,935 + -1.7 376,935 + -0.2 376,937 + -0.4 376,937 + +0.7 376,937 + -0.3 376,938 - -0.7 376,938 - +0.3 376,938 - +0.2 377,064 - -1.4 377,119 + PFLU_RS01695 0.23 +0.7 377,119 + PFLU_RS01695 0.23 +0.6 377,120 - PFLU_RS01695 0.23 +0.8 377,207 + PFLU_RS01695 0.43 -1.1 377,207 + PFLU_RS01695 0.43 -1.8 377,207 + PFLU_RS01695 0.43 +0.9 377,207 + PFLU_RS01695 0.43 -1.4 377,208 - PFLU_RS01695 0.43 +0.7 377,272 + PFLU_RS01695 0.58 -0.1 377,272 + PFLU_RS01695 0.58 +0.2 377,272 + PFLU_RS01695 0.58 +0.8 377,272 + PFLU_RS01695 0.58 -0.2 377,273 - PFLU_RS01695 0.59 +0.1 377,273 - PFLU_RS01695 0.59 -0.3 377,303 + PFLU_RS01695 0.66 +1.4 377,312 + PFLU_RS01695 0.68 -0.8 377,312 + PFLU_RS01695 0.68 -0.5 377,312 + PFLU_RS01695 0.68 -0.8 377,312 + PFLU_RS01695 0.68 +0.3 377,312 + PFLU_RS01695 0.68 +0.6 377,312 + PFLU_RS01695 0.68 +0.6 377,312 + PFLU_RS01695 0.68 -3.1 377,312 + PFLU_RS01695 0.68 -1.0 377,312 + PFLU_RS01695 0.68 +0.3 377,313 - PFLU_RS01695 0.68 +0.3 377,313 - PFLU_RS01695 0.68 +0.7 377,313 - PFLU_RS01695 0.68 -0.1 377,313 - PFLU_RS01695 0.68 +1.3 377,313 - PFLU_RS01695 0.68 -0.2 377,313 - PFLU_RS01695 0.68 -1.3 377,368 + PFLU_RS01695 0.81 +0.1 377,368 + PFLU_RS01695 0.81 +1.4 377,369 - PFLU_RS01695 0.81 +0.7 377,369 - PFLU_RS01695 0.81 -1.0 377,369 - PFLU_RS01695 0.81 +1.5 377,484 - +0.1 377,531 + -0.8 377,531 + -1.9 377,531 + -2.6 377,532 - +0.5 377,532 - +0.5 377,532 - +0.2 377,709 + PFLU_RS01700 0.34 -0.4 377,709 + PFLU_RS01700 0.34 -1.0 377,709 + PFLU_RS01700 0.34 -0.3 377,710 - PFLU_RS01700 0.34 +0.2 377,710 - PFLU_RS01700 0.34 -0.1 377,710 - PFLU_RS01700 0.34 +0.3 377,710 - PFLU_RS01700 0.34 -0.6 377,782 + PFLU_RS01700 0.48 -1.3 377,782 + PFLU_RS01700 0.48 +0.4 377,782 + PFLU_RS01700 0.48 +0.2 377,782 + PFLU_RS01700 0.48 +0.9 377,783 - PFLU_RS01700 0.48 -0.4 377,783 - PFLU_RS01700 0.48 -0.1 377,783 - PFLU_RS01700 0.48 -0.2 377,783 - PFLU_RS01700 0.48 +0.5 377,903 + PFLU_RS01700 0.70 -1.0 377,904 - PFLU_RS01700 0.70 +0.3 377,904 - PFLU_RS01700 0.70 -0.8 377,910 + PFLU_RS01700 0.72 +0.8 377,910 + PFLU_RS01700 0.72 +1.5 377,911 - PFLU_RS01700 0.72 +0.7 378,105 + +0.6 378,105 + -0.1 378,105 + -0.4 378,105 + -0.7 378,106 - +0.2 378,119 + -0.2 378,119 + -0.1 378,119 + +0.5 378,119 + +0.7 378,119 + -2.2 378,119 + +0.3 378,120 - -0.7 378,120 - +0.8 378,120 - +0.9 378,120 - -0.8 378,165 + -2.0 378,165 + +1.2 378,165 + -0.0 378,165 + +0.9 378,165 + -0.1 378,207 - +0.2 378,207 - +1.5 378,207 - +0.3 378,211 + +0.2 378,212 - +0.2 378,212 - +0.1 378,256 + +0.1 378,257 - -0.1 378,257 - +0.8 378,276 + -1.2 378,276 + +0.9 378,276 + -0.2 378,277 - +1.5 378,313 + -0.3 378,314 - -2.5 378,317 - -0.7 378,317 - -0.2 378,334 + +0.5 378,334 + -1.6 378,334 + +0.9 378,334 + +0.4 378,335 - +1.0 378,335 - +0.3 378,335 - +0.6 378,335 - -0.0 378,422 + +0.2 378,422 + -2.8 378,422 + +1.1 378,422 + -0.7 378,422 + +0.8 378,422 + +0.3 378,422 + -0.2 378,422 + +1.9 378,423 - +0.6 378,423 - +0.0 378,423 - +1.2 378,423 - -0.2 378,436 + +0.3 378,436 + -0.9 378,436 + +0.4 378,436 + +0.3 378,436 + -0.8 378,437 - +0.6 378,437 - +1.0 378,437 - +1.2 378,437 - +0.3 378,439 + -0.2 378,439 + -0.3 378,439 + +0.5 378,439 + -1.2 378,469 + +1.1 378,470 - -0.5 378,472 + +0.3 378,473 - +0.7 378,505 + -0.5 378,505 + +0.0 378,506 - +0.2 378,804 + +0.9 378,805 - +1.7 378,826 - -0.2 378,826 - +0.6
Or see this region's nucleotide sequence